BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71750.2
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339394 jgi|Araly1|339394|fgenesh1_pg.C_scaffold_2001493 612 1e-174
> Ahg339394 jgi|Araly1|339394|fgenesh1_pg.C_scaffold_2001493
Length=564
Score = 612 bits (331), Expect = 1e-174
Identities = 426/471 (90%), Gaps = 9/471 (2%)
Strand=Plus/Plus
Query 56 ATGGCGTTAGAGAAGCACATAGAGAAGGTACTCTTCAGCGATGAAGTAATTGC-GCACCG 114
|||||| ||||||||||||||||||||| || ||||||||||||||||| || | | ||
Sbjct 1 ATGGCGCAAGAGAAGCACATAGAGAAGGTGCTTTTCAGCGATGAAGTAATCGCTG-AGCG 59
Query 115 -GGTGAATCAGCTTGGAATC-GATATTACTTCTGATTTCTCCGGTGACTCGGAGGAAACT 172
| || ||| ||||| ||| || |||||||||||||||||||||||||| |||| |
Sbjct 60 TGTTG-GTCAACTTGG-ATCTGAGATTACTTCTGATTTCTCCGGTGACTC---GGAATCG 114
Query 173 CCTATTTTTGTCGGCGTAGCCACTGGTGCTTGCCTCTTCTTGGCCGATCTCGTTAGGCGA 232
||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 115 CCTGTTTTCGTCGGCGTAGCCACCGGTGCTTGCCTTTTCTTGGCCGATCTCGTTAGGCGA 174
Query 233 ATTGACTTGCCAATAGCTATAGATTTCATTAGAGCTGAGTCTTACGGCTCTGGTACTGTA 292
||||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 175 ATTGACTTGCCCATCGCTATTGATTACATCAGAGCTGAGTCTTACGGCTCTGGTACTGTA 234
Query 293 TCCAGTGGAGTTCCCAGAGTATCATTTGACTTAAAGCTTGACATCACGAACAAGCACGTT 352
|||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 TCCAATGGACTTCCCAGAATATCGTTTGACTTAAAGCTTGACATCACGAACAAGCACGTT 294
Query 353 GTCTTGGTCGAGGACATTGTGGATACTGGCAATACACTTAGCTGCCTGATTGAGCACATG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 295 GTCTTGGTCGAGGACATTGTGGATACTGGCAATACACTTAGCTGCCTGATTGAGCACCTA 354
Query 413 AAAGCAAAAAAGGCGTCATCTGTTTCGGTTTGCACTCTCCTCGACAAGCCATCGAGAAGA 472
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 355 AAATTGAAAAAGGCATCATCTGTTTCGGTTTGTACTCTCCTCGACAAGCCATCGAGAAGA 414
Query 473 AAGGTTCATTATAAGCTGGTTGGAAAGGGGAAATTCTACAGTGGTTTTGAA 523
|||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 415 AAGGTTCATTTTAAGCTGTTTGGGAATGGGAAATTCTACAGTGGTTTTGAA 465
Score = 163 bits (88), Expect = 2e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 554 TGTCCAGATGAATTTGTCGTGGGCTATGGCATGGATTTTGCAGAACAATACCGCAACCTA 613
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 466 TGTCCAGATGAATTTGTTGTGGGCTATGGCATGGACTTTGCAGAGCAATACCGCAACCTA 525
Query 614 TCTTACATTGGCGTATTGAAGCCTGAATATTACATGT 650
|||||||||||||||||||||||||||||||||||||
Sbjct 526 TCTTACATTGGCGTATTGAAGCCTGAATATTACATGT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5