BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71810.1
Length=2479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476302 jgi|Araly1|476302|fgenesh2_kg.2__1432__AT1G71810.1 3631 0.0
> Ahg476302 jgi|Araly1|476302|fgenesh2_kg.2__1432__AT1G71810.1
Length=2392
Score = 3631 bits (1966), Expect = 0.0
Identities = 2139/2223 (96%), Gaps = 10/2223 (0%)
Strand=Plus/Plus
Query 193 CTCTGTA-GATTTTGAAAGAGATGCTTCGGCTTCCTTCTTCTATGCCAATCGTTTCTTTT 251
||||| | ||| ||| |||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 131 CTCTGCATGATATTGGAAGAGATGATTCTGCTTCCTTCTTCTATGCCAATCTTTTCTTTT 190
Query 252 CCCGCCAATCCCAATCTGCTGATTAATCCACAACCATCTTGGCCGTCGCGAAGAGGAAAC 311
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 191 CCCGCCAATCCCAATCTGCTGATTAATCCACCACCGTCTTGGCCGTCGCGAAGAGGAACC 250
Query 312 TCCGCCGTTGTTGTCTCCGCTGCGTCTAGAGATGTAGATAGTTTCACTAGTAAATCCGGT 371
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 251 TCCGCCGTTGTTGTCTCCGCTGCGTCTAGAGATGTAGATAGCTTCACGAGTAAATCCGGT 310
Query 372 TATTTGTTCAGTCTCAGTGCCGATGAGGCTGATTCTTTGTCGGAGTACAATTTTCCCAGG 431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TATTTGTTCCGTCTCAGTGCCGATGAGGCTGATTCTTTGTCGGAGTACAATTTTCCCAGG 370
Query 432 ATTGATGGGATGTATAAGAAGAAACCTCTGATTCTGCTTCGTAGATTAGCTCAGATCGGA 491
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 371 ATTGATGGGATGTATAAGAAGAAGCCTCTGATTCTGCTTCGTAGATTGGCTCAGATCGGA 430
Query 492 ACTACGTTTAGTTATTGGTTTGGGCTTCGCTTAGCTGATGAGGCTTTGGAACGCTCTGAT 551
||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 431 ACTACGTTTGGTTACTGGTTTGGGCTTCGCTTAGCCGATGAGGCTTTGGAACGGTCTGAG 490
Query 552 CAAATGTTCAAGGTACGAGCAGCGGAGCTTAGGAAATTGCTTGTGGAGCTAGGTCCGGCG 611
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 491 CAGATGTTCAAGGTACGAGCAGCTGAGCTTAGGAAATTGCTGGTGGAACTAGGTCCGGCG 550
Query 612 TACGTCAAAATCGCTCAAGCTGTTTCATCTCGTCCTGATTTGATACCTCCTATATACTTG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TACGTCAAAATCGCTCAAGCTGTTTCATCTCGTCCTGATTTGATACCTCCTATATACTTG 610
Query 672 GATGAACTCTCCCTGCTACAAGATCAAATAACTCCGTTTTCAACCGAAGTTGCTTTCAAT 731
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 611 GATGAACTCTCCTTGCTACAAGATCAAATAACTCCGTTTTCAAGCGAAGTTGCTTTCAAT 670
Query 732 ATGATTGAGGATGAACTTGGTCTTCCTATAGATGAGCTTTTCTCTGAGATTTCTCCTGAG 791
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATGATAGAGGATGAACTTGGCCTTCCTATAGATGAGCTTTTCTCTGAGATTTCTCCTGAG 730
Query 792 CCTGTTGCTGCAGCGTCCCTTGGACAGGTATATCAAGCTAGGCTCCGTAGAAGTGGAAAG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CCTGTTGCTGCAGCGTCCCTTGGACAGGTATATCAAGCTAGGCTCCGTAGAAGTGGAAAG 790
Query 852 GTTGTTGCTGTCAAAGTGCAGCGCCCTGGTGTACGAGCTGCAATTGCTTTGGACACATTA 911
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 791 GTTGTTGCTGTCAAAGTTCAGCGGCCTGGTGTACGAGCTGCTATTGCTTTGGACACATTA 850
Query 912 ATTCTTCGGTATATAGCGGGTTTGATTAAAAAGGCTGGAAGATTCAACTCTGATCTCGAG 971
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATTCTGCGATATATAGCGGGTTTGATTAAAAAGGCTGGAAGATTCAACTCTGATCTCGAG 910
Query 972 GCAGTTGTTGATGAATGGGCAACAAGTCTGTTTAAGGAGATGGATTACTTGAATGAAGCT 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GCAGTTGTTGATGAATGGGCAACAAGTCTGTTTAAGGAGATGGATTACTTGAATGAAGCC 970
Query 1032 CAAAACGGAATAAAATTTAGGAAGTTGTATGGTGGCATCAAAGATGTCTTGGTTCCAAAG 1091
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAAAATGGAATAAAATTTAGGAAGTTGTATGGTGGCATCAAAGATGTCTTGGTTCCAAAG 1030
Query 1092 ATGTACACAGAGTACAGTACCAGCAAAGTTCTTGTAATGGAATGGGTGGAGGGTCAGAAG 1151
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1031 ATGTACACAGAGTACAGTACCAGCAAAGTTCTTGTAATGGAGTGGGTGGAGGGTCAGAAG 1090
Query 1152 CTTAATGAAGTTAATGACCTTTATTTAGTTGAGGTTGGCGTTTACTGTTCGTTTAATCAA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CTTAATGAAGTTAATGACCTTTATTTAGTTGAGGTTGGCGTTTACTGTTCGTTTAATCAA 1150
Query 1212 CTTCTGGAGTATGGATTTTACCATGCCGATCCCCACCCTGGGAATTTTCTTCGCACGTAT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTTCTGGAGTATGGATTTTACCATGCCGATCCCCACCCTGGGAATTTTCTTCGCACGTAT 1210
Query 1272 GATGGGCAACTTGCATACTTAGATTTTGGTATGATGGGGGACTTTAGGCCAGAATTACGT 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GATGGGCAACTTGCATACTTAGATTTTGGTATGATGGGGGACTTTAGGCCAGAATTACGT 1270
Query 1332 GATGGATTCATGGAAGCATGTCTTCATCTTGTAAATCGTGACTTCAAAGCGCTGGCTAAA 1391
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1271 GATGGATTCCTGGAAGCATGTCTTCATCTCGTAAATCGTGACTTCAAAGCGCTGGCTAAA 1330
Query 1392 GACTTTGTAACTCTGGGGCTTCTTCCACCAACAGCAGAAAAGAGCGCTGTGACAAAGGCT 1451
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1331 GACTTTGTAACTCTGGGGCTTCTTCCGCCAACAGCAGAAAAGAGCGCTGTGACAAAGGCT 1390
Query 1452 TTAACCGATGTTTTTCAAGATGCAATTTCTAGAGGAGTTCGCAATATAAGCTTCGGTGAC 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TTAACCGATGTTTTTCAAGATGCAATTTCTAGAGGAGTTCGCAATATAAGCTTCGGTGAC 1450
Query 1512 CTGCTTGGCGACTTGGGAAAAACAATGTACCGATTCAAATTCAGAATACC-CCCTTATTT 1570
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 1451 CTGCTTGGCGACTTGGGAAAAACAATGTACCGATTCAAATTTAGAATACCACCCT-ATTT 1509
Query 1571 TTCTCTAGTTATCCGCAGTCTTGCTGTTTTGGAGGGCATTGCCATCGGTATAAGCCCAAA 1630
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1510 TTCTCTAGTTATCCGCAGCCTAGCTGTTTTGGAGGGCATTGCCATCGGTATAAGCCCAAA 1569
Query 1631 CTACAAGGTTCTAGGCAGTACATACCCTTGGATTGCTAGAAAGATTCTAACCGACAGCTC 1690
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1570 CTACAAGGTTTTAGGCAGTACATACCCTTGGATTGCTAGAAAGATTCTAACTGACAGCTC 1629
Query 1691 TCCACAACTGAAAAGCTCTCTGCAAAATCTTTTATATGAGGAAGGTGTTTTCCGAATTGA 1750
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1630 TCCACAGCTGAAAAGCTCTCTGCAAAATCTTTTATATGAGGAAGGTGTTTTCCGAATCGA 1689
Query 1751 CCGTCTTGAGTCTTTGCTTTCTGAGTCTCTTAGGACAGAGACAGCATTAGTTCAGAAACC 1810
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1690 CCGTCTTGAGTCTTTGCTTTCTGAGTCTCTTAGGACAGAGACGGCATTAATTCAAAAACC 1749
Query 1811 AGTGGTGGGGACAGAATCTAATATTGCCATGAAGCAAATGCTTGCTTTTACTTTCACGGA 1870
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1750 ACTGGTGGGGACAGATTCTAATATTGCCATGAAGCAAATGCTAGCTTTTACTTTCACAGA 1809
Query 1871 ACAGGGTTCTTTTGTAAGAGAAATCCTTCTTCGAGAATTCGCTAAGGGTCTTGATGCATA 1930
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1810 ACAGGGTTCTTTTGTCAGAGAAATCCTTCTTCGTGAATTAGCTAAGGGTCTTGATGCATT 1869
Query 1931 TGGATTGGCAACTTTGGACTCTTTTACATTTTCTGGTTCA-GGACCATCGAGTTCCTTGA 1989
|||||||||||||||||||||||| ||||||||||||||| || ||||| | ||||||||
Sbjct 1870 TGGATTGGCAACTTTGGACTCTTTCACATTTTCTGGTTCAAGG-CCATCCACTTCCTTGA 1928
Query 1990 CAGAAGAAGACATGACAAACCTTAGAACTTTCTATCGCCTCATCTCATTGTTCTCAGGGA 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 CAGAAGAAGACATGACAAACCTTAGAACTTTCTATCGCCTCATCTCATTGTTCTCAGGGA 1988
Query 2050 TGCAAAAGGCTAAAAGCCAAGTAAAAGCGGTGAGTAAATATGGTGAGGCGCTCACGCCTC 2109
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1989 TGCAAAAGGCTGAAAGCCAAGTAAAAGCGGTGAGTAAATATGGTGAGGCACTCACGCCTC 2048
Query 2110 TAGACGAAGCATCACTGGTCATGTATCAGCTTCCATCAGCACAAGAGATGCTTCCGATTC 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TAGACGAAGCATCACTGGTCATGTATCAGCTTCCATCAGCACAAGAGATGCTTCCGATTC 2108
Query 2170 TCTCCATATTACCTGAGCTTCCACAGGAATCACAACAGAGGTTGCTTCAGTTGCCAGGTG 2229
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2109 TCTCCATCTTACCTGAGCTTCCACAGGAATCGCAACAGAGGTTGCTTCAGTTGCCAGGTG 2168
Query 2230 ACTTGGTTGGAAGATTGGTGACTCGGGCTTTTGCTAGAACCATTCGCAGGATTTTTCTTT 2289
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 2169 ACTTGGTTGGAAGATTGGTGTCTCGGGCTTTTGCTAGAACCATTCGTAGGATGTTTCTTT 2228
Query 2290 GATGTCCGATTACAAATAAAAAC--TTGCAGATTTTAGACAAGACTACTGTGATTTGAGT 2347
|||||||||||||||| |||||| ||||||| ||||||||||||| ||| |||||||||
Sbjct 2229 GATGTCCGATTACAAAAAAAAACACTTGCAGAGTTTAGACAAGACTCCTGCGATTTGAGT 2288
Query 2348 T-ATTTATAATTTTTACATAAA--CTTGAAGAGAATCAGAGGAATGGCTGTTTTGATCCC 2404
| |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||
Sbjct 2289 TTATTTATAATTTTTACAGAAAAGCTTAAAGAGAATCAGAGGAATGGATGTTTTGATCCG 2348
Query 2405 ACA 2407
|||
Sbjct 2349 ACA 2351
Score = 187 bits (101), Expect = 3e-46
Identities = 131/145 (90%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 1 GGTGCCATTTGTGTGACACAGAAAATCCCAGCAAATGTCg-agaga-gagagaAAGTATA 58
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1 GGTGCCATTTGTGTGACACAGAAAATCCCAGCAAATGTCGAAGGGACGAGAGAAAGTATA 60
Query 59 AAGAATGTGACCGGCAAAAAAGAGATAAAACAGTAGAGAACCAT-ATTATTTGCCATTTC 117
|||||||||||| |||||||||||||||||||||||||| | || ||| |||||||
Sbjct 61 AAGAATGTGACCAGCAAAAAAGAGATAAAACAGTAGAGAGTTTTCAT-ATTAGCCATTTT 119
Query 118 TTAGAAGAATCCACTGCATGATATT 142
|| ||||||||| ||||||||||||
Sbjct 120 TTTGAAGAATCCTCTGCATGATATT 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93435370985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5