BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G71880.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926547 jgi|Araly1|926547|scaffold_202108.1 2543 0.0
Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1 1500 0.0
Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1 1495 0.0
Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472 449 3e-125
> Ahg926547 jgi|Araly1|926547|scaffold_202108.1
Length=1586
Score = 2543 bits (1377), Expect = 0.0
Identities = 1520/1589 (96%), Gaps = 9/1589 (1%)
Strand=Plus/Plus
Query 130 gtgtttttttttttACTTCCTGATAATGGGAGCCTATGAAACAGAAAAACCAACTAAAGA 189
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GTGTGTTTTTTTTT-CTTCCTGATAATGGGAGCCTTTGAAACAGAAAAACCAACTAAAGA 59
Query 190 TGCGGCGGCTCTAGAGACACAGTCGCCGGAAGATTTCGATCAACCATCTCCGCTTCGTAA 249
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TGCGGCGGCTCTAGAGACACAGTCGCCGGAAGATTTCGATCAACCATCGCCGCTTCGTAA 119
Query 250 AATCATCTCCGTCGCTTCCATCGCCGCCGGTGTACAGTTCGGGTGGGCCTTACAGCTCTC 309
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 AATCATCTCCGTCGCTTCCATCGCCGCTGGTGTACAGTTCGGGTGGGCCTTACAGCTCTC 179
Query 310 TCTTCTTACTCCGTACGTTCAACTCCTCGGAATCCCTCACAAATGGTCATCTCTCATTTG 369
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 180 TCTTCTGACTCCGTACGTTCAACTCCTTGGAATCCCACACAAATGGTCATCTCTCATTTG 239
Query 370 GCTCTGTGGTCCAGTCTCCGGCATGATTGTTCAACCAATCGTCGGTTTCCACAGTGACCG 429
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GCTCTGTGGTCCAGTCTCCGGCATGATTGTTCAGCCAATCGTCGGTTTCCACAGTGACCG 299
Query 430 ATGTAGGTCCAAATTTGGTCGCCGTCGTCCTTTCATCGCCA-CCGGAGCCGCACTCGTCG 488
||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 300 ATGCAGGTCCAGATTCGGTCGCCGTCGTCCTTTCATCG-CATCCGGAGCCGCACTCGTCG 358
Query 489 CCGTCGCTGTTTTCCTCATCGGTTACGCTGCGGATTTCGGTTATAAAATGGGAGATAAAC 548
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTGTCGCCGTTTTCCTCATCGGTTACGCTGCGGATTTCGGTTATAAAATGGGAGATAAAC 418
Query 549 TCGAGGAGAAGGTTAAAGTTCGAGCTATAGGGATCTTTGCTCTCGGGTTCTGGATCCTCG 608
| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 TTGAGGACAAGGTAAAAGTTCGAGCTATAGGGATCTTCGCTCTCGGGTTCTGGATCCTCG 478
Query 609 ACGTAGCCAACAACACCTTACAAGGACCTTGCCGTGCTTTCTTAGCCGACTTAGCCGCCG 668
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 ACGTTGCCAACAACACCTTACAAGGACCTTGCCGTGCTTTCTTAGCGGATTTAGCCGCCG 538
Query 669 GTGACGCTAAGAGAACGCGAGTCGCAAACGCGTTTTTCTCtttttttATGGCGGTTGGAA 728
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 GTGACGCTAAGAGAACGCGAGTCGCAAATGCGTTTTTCTCTTTTTTTATGGCGGTTGGAA 598
Query 729 ACGTTTTGGGTTATGCGGCTGGTTCGTACACTAACCTCCACAAGATGTTTCCGTTCACAA 788
|||||||||| || |||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 599 ACGTTTTGGGATACGCGGCTGGATCGTACACTCACCTTCACAAGATGTTTCCGTTCACAA 658
Query 789 TGACAAAAGCTTGCGATATCTATTGCGCCAATCTCAAGACTTGTTTCTTCTTATCCATCA 848
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TGACAAAAGCTTGCGATATCTATTGCGCGAATCTCAAGACTTGTTTCTTCTTATCCATCA 718
Query 849 CTCTCCTCCTCATCGTCACCGTCACGTCTCTTTGGTACGTTAATGACAAACAATGGTCTC 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 CTCTCCTCCTCATCGTCACCGTCACGTCTCTTTGGTACGTTAAAGACAAACAATGGTCTC 778
Query 909 CGCCGCCGC-GAAATGCCGACGACGACGAGAAGACCTCAAGCGTTCCTTTGTTCGGTGAA 967
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGCCGCCGCGGAACT-CCGACGACGACGAGAAGACCTCAAGCGTTCCTTTGTTCGGTGAA 837
Query 968 ATCTTTGGAGCATTCAAAGTCATGAAACGTCCCATGTGGATGCTTCTAATCGTCACGGCC 1027
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCTTTGGAGCTTTCAGAGTCATGAAACGTCCCATGTGGATGCTTCTAATCGTCACGGCC 897
Query 1028 TTAAACTGGATCGCTTGGTTCCCATTTCTTTTGTTCGATACTGATTGGATGGGTCGTGAA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTAAACTGGATCGCTTGGTTCCCATTTCTTTTGTTCGATACTGATTGGATGGGTCGTGAA 957
Query 1088 GTGTTCGGTGGAGATTCAGATGGAAATGAACGATCGAAGAAACTATACAGTCTTGGAGTC 1147
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 GTGTACGGTGGAGATTCAGATGGAAATGAACGATCGAAGAAACTATACAGCCTTGGAGTC 1017
Query 1148 CAATCTGGTGCAATGGGATTGATGTTTAACTCTATAGTTCTTGGTTTCATGTCACTTGGT 1207
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 CAATCTGGTGCCATGGGATTGATGTTTAATTCTATAGTTCTTGGTTTCATGTCACTTGGT 1077
Query 1208 GTTGAATGGATTGGTCGGAAATTAGGAGGAGCTAAACGGCTTTGGGGTATTGTCAATTTC 1267
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1078 GTTGAATGGATTGGTCGGAAACTAGGAGGAGCTAAACGGCTTTGGGGAATTGTGAATTTC 1137
Query 1268 ATCCTAGCCGCTGGTTTGGCCATGACGGTTCTCGTTACGAAATTCGCCGAGGATCACCGG 1327
||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1138 ATCCTCGCCGCTGGTTTGGCCATGACGGTTCTCGTTTCGAAATTAGCCGAGGATCACCGG 1197
Query 1328 AAAACCGCCGGTGATTTAGCCGGACCGAGC-GCTAGTGTTAAAGCTGGAGCTTTAAGTCT 1386
||||||||||||| |||||||||||||||| | | || ||||||| ||||||||||||||
Sbjct 1198 AAAACCGCCGGTGCTTTAGCCGGACCGAGCAG-TGGTATTAAAGCAGGAGCTTTAAGTCT 1256
Query 1387 CTTTGCTGTTCTTGGTATCCCATTAGCTATTACTTTCAGTACTCCTTTTGCTCTAGCATC 1446
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1257 CTTTGCTGTTCTTGGTATCCCATTAGCTATTACTTTTAGTACTCCGTTTGCTCTAGCGTC 1316
Query 1447 CATATTCTCAAGCTGCTCCGGTGCAGGCCAAGGACTTTCATTAGGAGTTTTAAATTTGGC 1506
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1317 CATATTCTCAAGCTGCTCCGGTGCAGGCCAAGGGCTTTCTTTAGGAGTTTTAAATTTGGC 1376
Query 1507 GATTGTGATACCACAAATGATAGTCTCACTAGGAGGTGGACCTTTCGACGCCTTGTTCGG 1566
|||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 1377 GATTGTGATACCACAAATGATAGTATCACTTGGAGGTGGACCTTTTGACGCCCTGTTCGG 1436
Query 1567 CGGTGGAAACTTACCGGCGTTTATCGTTGCAGCAATTGCAGCGGCGATTAGTGGAGTATT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CGGTGGAAACTTACCGGCGTTTATCGTTGCAGCAATTGCAGCGGCGATTAGTGGAGTATT 1496
Query 1627 AGCGTTAACCGTTTTACCTTCACCACCACCGGACGCACCC-AAGGCAACGACCATGGGAG 1685
||| ||||||||||| |||||||| |||||||| || ||| ||||||||| |||||||||
Sbjct 1497 AGCCTTAACCGTTTTGCCTTCACCGCCACCGGATGC-CCCTAAGGCAACGGCCATGGGAG 1555
Query 1686 GATTCCACTAGTTTACTAttttttttttt 1714
||||||||||||||||||| |||||||||
Sbjct 1556 GATTCCACTAGTTTACTATGTTTTTTTTT 1584
> Ahg476315 jgi|Araly1|476315|fgenesh2_kg.2__1445__AT1G71890.1
Length=1634
Score = 1500 bits (812), Expect = 0.0
Identities = 1306/1539 (85%), Gaps = 56/1539 (4%)
Strand=Plus/Plus
Query 152 ATAATGGGAGCCTAT-GAAACAGAAA-AACCAACTAAAGATGCGGCGGC-TCTAGAGACA 208
||||||||||||| | ||| |||||| | || | || ||||||||||| | ||||||||
Sbjct 29 ATAATGGGAGCCT-TGGAAGCAGAAAGAGCC-GCCAACGATGCGGCGGCGT-TAGAGACA 85
Query 209 CAGTC-GC--CGGAAGATTTCGATCAACCATCTCCGCTTCGTAAAATCATCTCCGTCGCT 265
||||| | |||||||| ||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 86 CAGTCTTCATCGGAAGATCTCGGTCAACCATCTCCGCTGCGTAAAATCATCTCCGTGGCT 145
Query 266 TCCATCGCCGCCGGTGTACAGTTCGGGTGGGCCTTACAGCTCTCTCTTCTTACTCCGTAC 325
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 146 TCAATCGCCGCCGGTGTACAGTTTGGGTGGGCCTTACAGCTCTCTCTTCTGACTCCTTAC 205
Query 326 GTTCAACTCCTCGGAATCCCTCACAAATGGTCATCTCT-CATTTGGCTCTGTGGTCC-AG 383
|| ||||| ||||||||||||||||||||||| ||| | ||| |||||||||||||| |
Sbjct 206 GTACAACTTCTCGGAATCCCTCACAAATGGTCGTCT-TACATGTGGCTCTGTGGTCCTA- 263
Query 384 TCTCCGGCATGATTGTTCAACCAATCGTCGGTTTCCACAGTGACCGATGTAG-GTCCAAA 442
||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||| |
Sbjct 264 TCTCCGGCATGCTTGTTCAACCAATCGTCGGTTACCACAGTGACCGATG-CGAGTCCAGA 322
Query 443 TTTGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGCACTCGTCGCCGTCGCTGTTTTC 502
|| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||
Sbjct 323 TTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGTACTCGTAGCCGTCTCGGTTTTC 382
Query 503 CTCATCGG-TTACGCTGCGGATTTCGGTTATAAAATGGGAGATAAACTCGAGGAGAAGGT 561
|| ||||| || ||| |||||| | || ||| | ||||||||||||||| | ||||
Sbjct 383 CTTATCGGATT-CGCGGCGGATATGGGACATAGTTTTGGAGATAAACTCGAGAACAAGG- 440
Query 562 TAAAG-TTCGAGCTA-TAGGGATCTTTGC-T-CTCGGGTTCTGGATCCTCGACGTAGCCA 617
||| | |||||| | || ||| || | | | |||||| ||| |||| ||||| || |
Sbjct 441 TAAGGACTCGAGCCATTA-TAATC-TTCCTTAC-CGGGTTTTGGGTCCTTGACGTGGCTA 497
Query 618 ACAACACCTTACAAGGACCTTGCCGTGCTTTCTTAGCCGACTTAGCCGCCGGTGACGCTA 677
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 498 ACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGATTTAGCCGCCGGAGACGCTA 557
Query 678 AGAGAACGCGAGTCGCAAACGCGTTTTTCTCtttttttATGGCGGTTGGAAACGTTTTGG 737
| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 558 AAAAAACGCGAGTCGCAAACGCATGTTTCTCTTTTTTTATGGCGGTTGGAAACGTTTTGG 617
Query 738 GTTATGCGGCTGGTTCGTACACTAACCTCCACAAGATGTTTCCGTTCACAATGACAAAAG 797
|||| || ||||| || ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 618 GTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTTCCTTTCACAATGACAAAAG 677
Query 798 CTTGCGATATCTATTGCGCCAATCTCAAGACTTGTTTCTTCTTATCCATCACTCTCCTCC 857
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 678 CTTGCGATGTCTATTGCGCGAATCTCAAGACTTGTTTCTTCCTATCCATCACTCTCCTCC 737
Query 858 TCATCGTCACCGTCACGTCTCTTTGGTACGTTAATGACAAACAATGGTCTCCGCCGCCGC 917
| ||| ||||| || ||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 738 TTATCCTCACCTTCTCGTCTCTATGGTACGTTAAAGACAAACAATGGTCTCCGCCAC--- 794
Query 918 GAAATGCCGACGACGACGAGAAGACCTCAAGCGTTCCTTTGTTCGGTGAAATCTTTGGAG 977
| || || || | ||||| || ||||| ||| ||| || || |||||||||||||
Sbjct 795 -A--TGGAGA-GAA-A-GAGAAAACATCAAGTGTTTTTTTCTTTGGAGAAATCTTTGGAG 848
Query 978 CAT-TCAAAGTCATGAAACGTCCCATGTGGATGCTTCTAATCGTCACGGCC-TTAAACTG 1035
| | ||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 849 C-TGTCAGAGTCATGAAACGTCCCATGTGGATGCTTCTAATGGTCACGGTTATTAAT-TG 906
Query 1036 GATCGCTTGGTTCCCATTTCTTTTGTTCGATACTGATTGGATGGGTCGTGAAGTGTTCGG 1095
|||||||||||| || |||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 907 GATCGCTTGGTTTCCGTTTCTTTTGTACGATACCGATTGGATGGGTCGTGAAGTGTACGG 966
Query 1096 TGGAGATTCAGATGGAAATGAACGATCGAAGAAACTATACAGTCTT-GGAGTCCAATCTG 1154
|||| |||||||||||||||| | | | |||||||| ||| | | ||||| || |||
Sbjct 967 TGGAAATTCAGATGGAAATGAGCAAGCCAAGAAACTTTAC-GACCAAGGAGTTCAGGCTG 1025
Query 1155 GTGCAATGGGATTGATGTTTAACTCTATAGTTCTTGGTTTCATGTCACTTGGTGTTGAAT 1214
||||| |||||||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 1026 GTGCATTGGGATTGATGTTTAATTCAATACTTCTTGGTTTCGTGTCACTTGGTGTTGAAT 1085
Query 1215 GGATTGGTCGGAAATTAGGAGGAGCTAAACGGCTTTGGGGTAT-TGTCAATTTCATCCTA 1273
||||||||||||| | |||||||||||||| |||||||| || ||| |||||||| ||
Sbjct 1086 CGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGG-ATGTGTGAATTTCATACTC 1144
Query 1274 GCCGCT-GGTTTGGCCATGACGGTTCTCGTTACGAAATTCGCCGAGGATCACCGGAAAAC 1332
||| | |||||||||||||||||||| |||||| ||| ||| || | |||||||||||
Sbjct 1145 GCCA-TAGGTTTGGCCATGACGGTTCTTGTTACGCAATCCGCTGATAACCACCGGAAAAC 1203
Query 1333 CGCCGGTGATTTAG-CCGGACCGAGC-GCTAGTGTTAAAGCTGGAGC-TTTAAGTCTCTT 1389
|||||||| ||| | ||||||||||| | | || ||||||| |||| |||| |||||||
Sbjct 1204 CGCCGGTGCTTT-GTCCGGACCGAGCAG-TGGTATTAAAGCCGGAGTATTTA-GTCTCTT 1260
Query 1390 TGCTGTTCTTGGTATCCCATTAGCTATTACTTTCAGTACTCCTTTTGCTCTAGCATCCAT 1449
| | ||||||||||||||||| || ||||||| |||| ||| ||||| ||||| |||||
Sbjct 1261 TACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTGTTCCATTTGCACTAGCGTCCAT 1320
Query 1450 ATTCTCAAGCTGCTCCGGTGCAGGCCAAGGACTTTCAT-TAGGAGTTTTAAATTTGGCGA 1508
||||||| | |||||||| |||||||||||||| | |||| ||||||||| | ||||
Sbjct 1321 TTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTC-TCTAGGCGTTTTAAATATAGCGA 1379
Query 1509 TT-GTGATACCACAAATGATAGTCTCACTAGGAGGTGGACCTTTCGACGC-CTTGTTCGG 1566
|| || ||||||||||||||||| ||| | | ||||||| || ||||| | |||||
Sbjct 1380 TTTGT-ATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAC-TTCGG 1437
Query 1567 CGGTGGAAACTTACCGGCGTTTATCGTTGCAGCAATTGCAGCGGCGATTAGTGGAGTATT 1626
|||||||||| |||| | ||| | || | ||| ||||| || |||||||||||||| ||
Sbjct 1438 CGGTGGAAACCTACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGAGTGTT 1497
Query 1627 AGCGTTAACCGTTTTACCTTCACCACCACCGGACGCACC 1665
||||||||||||| |||||||||| || ||||||||||
Sbjct 1498 AGCGTTAACCGTTCTACCTTCACCGCCTGCGGACGCACC 1536
> Ahg497263 jgi|Araly1|497263|fgenesh2_kg.106__1__AT1G71890.1
Length=1634
Score = 1495 bits (809), Expect = 0.0
Identities = 1306/1540 (85%), Gaps = 58/1540 (4%)
Strand=Plus/Plus
Query 152 ATAATGGGAGCCTAT-GAAACAGAAA-AACCAACTAAAGATGCGGCGGC-TCTAGAGACA 208
||||||||||||| | ||| |||||| | || | || ||||||||||| | ||||||||
Sbjct 29 ATAATGGGAGCCT-TGGAAGCAGAAAGAGCC-GCCAACGATGCGGCGGCGT-TAGAGACA 85
Query 209 CAGTC-GC--CGGAAGATTTCGATCAACCATCTCCGCTTCGTAAAATCATCTCCGTCGCT 265
||||| | |||||||| ||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 86 CAGTCTTCATCGGAAGATCTCGGTCAACCATCTCCGCTGCGTAAAATCATCTCCGTGGCT 145
Query 266 TCCATCGCCGCCGGTGTACAGTTCGGGTGGGCCTTACAGCTCTCTCTTCTTACTCCGTAC 325
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 146 TCAATCGCCGCCGGTGTACAGTTTGGGTGGGCCTTACAGCTCTCTCTTCTGACTCCTTAC 205
Query 326 GTTCAACTCCTCGGAATCCCTCACAAATGGTCATCTCT-CATTTGGCTCTGTGGTCC-AG 383
|| ||||| ||||||||||||||||||||||| ||| | ||| |||||||||||||| |
Sbjct 206 GTACAACTTCTCGGAATCCCTCACAAATGGTCGTCT-TACATGTGGCTCTGTGGTCCTA- 263
Query 384 TCTCCGGCATGATTGTTCAACCAATCGTCGGTTTCCACAGTGACCGATGTAG-GTCCAAA 442
||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||| |
Sbjct 264 TCTCCGGCATGCTTGTTCAACCAATCGTCGGTTACCACAGTGACCGATG-CGAGTCCAGA 322
Query 443 TTTGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGCACTCGTCGCCGTCGCTGTTTTC 502
|| |||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||
Sbjct 323 TTCGGTCGCCGTCGTCCTTTCATCGCCACCGGAGCCGTACTCGTAGCCGTCTCGGTTTTC 382
Query 503 CTCATCGG-TTACGCTGCGGATTTCGGTTATAAAATGGGAGATAAACTCGAGGAGAAGGT 561
|| ||||| || ||| |||||| | || ||| | ||||||||||||||| | ||||
Sbjct 383 CTTATCGGATT-CGCGGCGGATATGGGACATAGTTTTGGAGATAAACTCGAGAACAAGG- 440
Query 562 TAAAG-TTCGAGCTA-TAGGGATCTTTGC-T-CTCGGGTTCTGGATCCTCGACGTAGCCA 617
||| | |||||| | || ||| || | | | |||||| ||| |||| ||||| || |
Sbjct 441 TAAGGACTCGAGCCATTA-TAATC-TTCCTTAC-CGGGTTTTGGGTCCTTGACGTGGCTA 497
Query 618 ACAACACCTTACAAGGACCTTGCCGTGCTTTCTTAGCCGACTTAGCCGCCGGTGACGCTA 677
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 498 ACAACACCTTACAAGGACCATGCCGTGCTTTCTTAGCCGATTTAGCCGCCGGAGACGCTA 557
Query 678 AGAGAACGCGAGTCGCAAACGCGTTTTTCTCtttttttATGGCGGTTGGAAACGTTTTGG 737
| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 558 AAAAAACGCGAGTCGCAAACGCATGTTTCTCTTTTTTTATGGCGGTTGGAAACGTTTTGG 617
Query 738 GTTATGCGGCTGGTTCGTACACTAACCTCCACAAGATGTTTCCGTTCACAATGACAAAAG 797
|||| || ||||| || ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 618 GTTACGCTGCTGGATCTTACACTAACCTTCACAAAATGTTTCCTTTCACAATGACAAAAG 677
Query 798 CTTGCGATATCTATTGCGCCAATCTCAAGACTTGTTTCTTCTTATCCATCACTCTCCTCC 857
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 678 CTTGCGATGTCTATTGCGCGAATCTCAAGACTTGTTTCTTCCTATCCATCACTCTCCTCC 737
Query 858 TCATCGTCACCGTCACGTCTCTTTGGTACGTTAATGACAAACAATGGTCTCCGCCGCCGC 917
| ||| ||||| || ||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 738 TTATCCTCACCTTCTCGTCTCTATGGTACGTTAAAGACAAACAATGGTCTCCGCCAC--- 794
Query 918 GAAATGCCGACGACGACGAGAAGACCTCAAG-CGTTCCTTTGTTCGGTGAAATCTTTGGA 976
| || || || | ||||| || ||||| | || ||| || || ||||||||||||
Sbjct 795 -A--TGGAGA-GAA-A-GAGAAAACATCAAGTCTTTT-TTTCTTTGGAGAAATCTTTGGA 847
Query 977 GCAT-TCAAAGTCATGAAACGTCCCATGTGGATGCTTCTAATCGTCACGGCC-TTAAACT 1034
|| | ||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct 848 GC-TGTCAGAGTCATGAAACGTCCCATGTGGATGCTTCTAATGGTCACGGTTATTAAT-T 905
Query 1035 GGATCGCTTGGTTCCCATTTCTTTTGTTCGATACTGATTGGATGGGTCGTGAAGTGTTCG 1094
||||||||||||| || |||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 906 GGATCGCTTGGTTTCCGTTTCTTTTGTACGATACCGATTGGATGGGTCGTGAAGTGTACG 965
Query 1095 GTGGAGATTCAGATGGAAATGAACGATCGAAGAAACTATACAGTCTT-GGAGTCCAATCT 1153
||||| |||||||||||||||| | | | |||||||| ||| | | ||||| || ||
Sbjct 966 GTGGAAATTCAGATGGAAATGAGCAAGCCAAGAAACTTTAC-GACCAAGGAGTTCAGGCT 1024
Query 1154 GGTGCAATGGGATTGATGTTTAACTCTATAGTTCTTGGTTTCATGTCACTTGGTGTTGAA 1213
|||||| |||||||||||||||| || ||| ||||||||||| |||||||||||||||||
Sbjct 1025 GGTGCATTGGGATTGATGTTTAATTCAATACTTCTTGGTTTCGTGTCACTTGGTGTTGAA 1084
Query 1214 TGGATTGGTCGGAAATTAGGAGGAGCTAAACGGCTTTGGGGTAT-TGTCAATTTCATCCT 1272
| ||||||||||||| | |||||||||||||| |||||||| || ||| |||||||| ||
Sbjct 1085 TCGATTGGTCGGAAAATGGGAGGAGCTAAACGACTTTGGGG-ATGTGTGAATTTCATACT 1143
Query 1273 AGCCGCT-GGTTTGGCCATGACGGTTCTCGTTACGAAATTCGCCGAGGATCACCGGAAAA 1331
||| | |||||||||||||||||||| |||||| ||| ||| || | ||||||||||
Sbjct 1144 CGCCA-TAGGTTTGGCCATGACGGTTCTTGTTACGCAATCCGCTGATAACCACCGGAAAA 1202
Query 1332 CCGCCGGTGATTTAG-CCGGACCGAGC-GCTAGTGTTAAAGCTGGAGC-TTTAAGTCTCT 1388
||||||||| ||| | ||||||||||| | | || ||||||| |||| |||| ||||||
Sbjct 1203 CCGCCGGTGCTTT-GTCCGGACCGAGCAG-TGGTATTAAAGCCGGAGTATTTA-GTCTCT 1259
Query 1389 TTGCTGTTCTTGGTATCCCATTAGCTATTACTTTCAGTACTCCTTTTGCTCTAGCATCCA 1448
|| | ||||||||||||||||| || ||||||| |||| ||| ||||| ||||| ||||
Sbjct 1260 TTACCGTTCTTGGTATCCCATTGGCCATTACTTACAGTGTTCCATTTGCACTAGCGTCCA 1319
Query 1449 TATTCTCAAGCTGCTCCGGTGCAGGCCAAGGACTTTCAT-TAGGAGTTTTAAATTTGGCG 1507
| ||||||| | |||||||| |||||||||||||| | |||| ||||||||| | |||
Sbjct 1320 TTTTCTCAACCAATTCCGGTGCCGGCCAAGGACTTTC-TCTAGGCGTTTTAAATATAGCG 1378
Query 1508 ATT-GTGATACCACAAATGATAGTCTCACTAGGAGGTGGACCTTTCGACGC-CTTGTTCG 1565
||| || ||||||||||||||||| ||| | | ||||||| || ||||| | ||||
Sbjct 1379 ATTTGT-ATACCACAAATGATAGTATCATTCTCAAGTGGACCATTGGACGCTCAC-TTCG 1436
Query 1566 GCGGTGGAAACTTACCGGCGTTTATCGTTGCAGCAATTGCAGCGGCGATTAGTGGAGTAT 1625
||||||||||| |||| | ||| | || | ||| ||||| || |||||||||||||| |
Sbjct 1437 GCGGTGGAAACCTACCTTCATTTGTGGTCGGAGCTATTGCGGCTGCGATTAGTGGAGTGT 1496
Query 1626 TAGCGTTAACCGTTTTACCTTCACCACCACCGGACGCACC 1665
|||||||||||||| |||||||||| || ||||||||||
Sbjct 1497 TAGCGTTAACCGTTCTACCTTCACCGCCTGCGGACGCACC 1536
> Ahg319456 jgi|Araly1|319456|fgenesh1_pm.C_scaffold_3002472
Length=1230
Score = 449 bits (243), Expect = 3e-125
Identities = 437/525 (83%), Gaps = 35/525 (7%)
Strand=Plus/Plus
Query 581 ATCTTTGCTCTCGGGTTCTGGATCCTCGACGTAGCCAACAACAC-CTTACAAGGACCTTG 639
||||| ||| |||| ||||||||||| ||||| || |||||||| | | |||||||||||
Sbjct 310 ATCTTCGCTTTCGGTTTCTGGATCCTTGACGTGGCTAACAACACAC-TCCAAGGACCTTG 368
Query 640 CCGTGCTTT-CTTAGCCGACTTAGCCGCCGGTGACGCTAAGAGAACGCGAGTC-GCAAAC 697
||| ||||| ||| | || |||||||| || |||||||||| ||||||| | ||||||
Sbjct 369 CCGCGCTTTCCTT-GGTGATTTAGCCGCTGGAGACGCTAAGAAAACGCGA-ACAGCAAAC 426
Query 698 GCGTTTTTCTCtttttttATGGCGGTTGGAAACGTTTTGGGTTATGCGGCTGGTTCGTAC 757
||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||||
Sbjct 427 GCGTTTTTCTCTTTTTTCATGGCCGTTGGAAACGTTTTGGGATACGCGGCCGGATCGTAC 486
Query 758 ACTAACCTCCACAAGATGTTTCCGTTCACAATGACAAAAGCTTGCGATATCTATTGCGCC 817
||||||||||||||||| || || ||||||||||| ||||| ||||| || ||||||||
Sbjct 487 ACTAACCTCCACAAGATCTTCCCTTTCACAATGACTAAAGCATGCGACATTTATTGCGCA 546
Query 818 AATCTCAAGACTTGTTTCTTC-TTATCCATCACTCTCCTCCTCA-TCGTCACCGTCA-CG 874
|||||||||| |||||||||| || ||||||||||| ||||| | |||||||| ||| |
Sbjct 547 AATCTCAAGAGTTGTTTCTTCATT-TCCATCACTCTTCTCCT-AGTCGTCACCATCATAG 604
Query 875 TCTCTTTGGTACGT-TAATGACAAACAATGGTCTCCGCCGCCGCGA-AATGCCGACGACG 932
||||| ||||||| || ||||| |||||||| || | || | | | ||||| |
Sbjct 605 -CTCTTCGGTACGTGGAA-GACAAGCAATGGTCGCCTAAG--GC-AGACT-CCGAC-A-- 655
Query 933 ACGAGAAGACCTCAAGCGTTCCTTTGTTCGGTGAAATCTTTGGAGCATTCAAAGTCATGA 992
||||||| | ||| |||| | |||||||| ||||||||||| ||||| || ||||
Sbjct 656 ACGAGAA-AACTC---CGTT-C----TTCGGTGAGATCTTTGGAGCTTTCAAGGTGATGA 706
Query 993 AACGTCCCATGTGGATGCTT-CTAATCGTCACGGCCTTAAACTGGATCGCTTGGTTCCCA 1051
||||||| ||||||||| || |||||| |||||||||| ||||||||||| ||||||||
Sbjct 707 AACGTCCAATGTGGATG-TTACTAATCCTCACGGCCTTGAACTGGATCGCATGGTTCCCT 765
Query 1052 TTTCTTTTGT-TCGATACTGATTGGATGGGTCGTGAAGTGTTCGG 1095
|||||||| | | |||||||||||||||||||||||||||| |||
Sbjct 766 TTTCTTTTATAT-GATACTGATTGGATGGGTCGTGAAGTGTACGG 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5