BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G71960.1 Length=2267 Score E Sequences producing significant alignments: (Bits) Value Ahg476326 jgi|Araly1|476326|fgenesh2_kg.2__1456__AT1G71960.1 3210 0.0 > Ahg476326 jgi|Araly1|476326|fgenesh2_kg.2__1456__AT1G71960.1 Length=2208 Score = 3210 bits (1738), Expect = 0.0 Identities = 1972/2085 (95%), Gaps = 15/2085 (1%) Strand=Plus/Plus Query 1 AGCTTTCTCCATTTTCACctctctctctctGTGttttttttAACTCCGTTTAAATTTTCC 60 |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 AGCTTTCTTCATTTTCACATCTCTCTCTCTGTTTTTTTTTTAACTCCGTTTAAATTTTCC 60 Query 61 GTCTGAATTTTACAAAGGAACACTAATGTCAGCTTTTGACGGCGTTGAAAATCAAATGAA 120 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 61 GTCTGAATTTTACAAAGGAAGACCAATGTCAGGTTTTGACGGCGTTGAAAATCAAATGAA 120 Query 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGCCTCGCTCATTATTATC 180 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 121 CGGTCCAGATTCATCTCCTCGTCTCTCTCAAGATCCTCGTGAGACTCGCTC---ATTATC 177 Query 181 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTTGATGTGTGTTACCGAGTCAAGATCCA 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 178 ATCTTCTTGTTTCCCAATCACCCTCAAGTTCGTCGATGTGTGTTACCGAGTCAAGATCAA 237 Query 241 TGGCATGAGTAACGATTCTTGTAATATCAAGAAACTATTAGGATTAAAACAAAAACCGTC 300 ||||||||||| ||||||||||||| |||||||| | |||||| ||||||| ||||||| Sbjct 238 TGGCATGAGTAGCGATTCTTGTAATTTCAAGAAATTTTTAGGACTAAAACATCAACCGTC 297 Query 301 CGATGAGACAAGATCGACGGAGGAGAGGACGATACTAAGCGGAGTCACCGGAATGATATC 360 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 298 CGATGAGACAAGATCAACGGAGGAGAGGACGATACTAAGCGGTGTCACCGGAATGATATC 357 Query 361 ACCCGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGCAAATCTACGCTACTAAA 420 || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct 358 TCCGGGCGAGTTTATGGCCGTTCTTGGACCATCGGGAAGTGGTAAATCAACTCTACTTAA 417 Query 421 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTCACCGGAAAAATACTTATAAACGACGG 480 ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 418 CGCAGTCGCAGGGAGACTCCATGGATCAAACCTTACCGGGAAAATACTCATAAACGACGG 477 Query 481 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TAAAATAACGAAACAAACATTAAAACGCACCGGATTTGTAGCACAAGACGATCTTCTTTA 537 Query 541 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTGGCTTTGCTTCGTCTTCCTCGGAG 600 |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| Sbjct 538 CCCTCACTTAACCGTACGTGAAACCTTAGTTTTCGTCGCCTTGCTTCGTCTTCCTCAGAG 597 Query 601 TCTAACAAGAGACGTTAA-ACTCAGAGCCGCTGAATCGGTTATATCGGAGCTAGGTTTAA 659 |||||| ||||||| ||| | ||||||||||||||||||||||||||||||| ||||||| Sbjct 598 TCTAACCAGAGACGATAAGA-TCAGAGCCGCTGAATCGGTTATATCGGAGCTTGGTTTAA 656 Query 660 CGAAATGTGAGAACACAGTCGTTGGGAACACTTTCATTAGAGGTATCTCTGGTGGAGAAA 719 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 657 CGAAATGTGAGAACACAGTCGTTGGAAACACTTTCATTAGAGGGATCTCTGGTGGAGAAA 716 Query 720 GGAAACGAGTTAGTATAGCTCATGAATTGCTTATAAACCCGAGTCTT-TTGGTTCTTGAT 778 |||||||||| ||||| |||||||||||||| ||||||||||||||| ||| |||||||| Sbjct 717 GGAAACGAGTGAGTATTGCTCATGAATTGCTAATAAACCCGAGTCTTCTTG-TTCTTGAT 775 Query 779 GAGCCTACTTCGGGTCTTGATGCTACGGCGGCGCTCCGGTTGGTTCAGACTCTTGCCGGG 838 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 776 GAGCCTACTTCGGGTCTTGATGCTACCGCGGCGCTCCGGTTGGTTCAGACTCTTGCGGGG 835 Query 839 TTGGCTCATGGGAAAGGAAAAACGGTGGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 898 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 836 TTGGCTCATGGGAAAGGAAAGACGGTTGTTACGTCGATTCATCAGCCGTCGAGTCGTGTG 895 Query 899 TTTCAGATGTTTGATACGGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGAAAA 958 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 896 TTTCAGATGTTTGATACTGTGCTTCTTTTGAGTGAAGGAAAGTGTTTGTTCGTCGGGAAA 955 Query 959 GGAAGAGACGCCATGGCTTACTTTGAATCCGTCGGATTTTCGCCGGCTTTTCCTATGAAT 1018 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 956 GGAAGAGACGCCATGGCTTACTTTGAGTCCGTCGGATTCTCGCCGGCGTTTCCTATGAAT 1015 Query 1019 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACGGAA 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1016 CCGGCTGATTTTCTTCTTGATCTTGCTAACGGAGTTTGTCAGACTGACGGTGTAACCGAA 1075 Query 1079 CGGGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1138 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 CGCGAAAAGCCAAACGTGAGACAAACGCTGGTCACGGCTTATGATACATTGCTAGCCCCA 1135 Query 1139 CAAGTCAAAACTTGTATCGAAGTGTCACATTTTCCTCAAGACAACGCGCGTTTCGTGAAA 1198 |||||||||||||| ||||||| |||||| ||||||||||| ||||||||||| |||||| Sbjct 1136 CAAGTCAAAACTTGCATCGAAGCGTCACAGTTTCCTCAAGAGAACGCGCGTTTTGTGAAA 1195 Query 1199 ACGCGAGTAAACGGCGGTGGAATAACAACATGTATTGCAACATGGTTTAGCCAACTCTGC 1258 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1196 ACGCGAGTAAGCGGCGGTGGAATAACAACATGTATTACAACATGGTTTAGCCAACTCTGC 1255 Query 1259 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCACGAATCCTTT-GACTTACTTCGCA- 1316 ||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| | Sbjct 1256 ATTCTCCTCCACAGACTTTTAAAAGAACGGCGTCATGAATC-TTTCGACGCACTTCG-AG 1313 Query 1317 TTTTCCAAGTCGTCGCGGCTTCGATCCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1376 ||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct 1314 TTTTCCAAGTCATCGCGGCGTCGTTGCTTTGTGGTCTCATGTGGTGGCACTCTGATTATC 1373 Query 1377 GAGACGTACATGACCGACTAGGCCTACTCTTCTTCATATCCATCTTTTGGGGAGTACTTC 1436 ||||| |||||||||||||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 1374 GAGACATACATGACCGACTAGGCCTACTATTCTTCATATCCATCTTCTGGGGGGTGCTTC 1433 Query 1437 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCAATTTTCACTAGAGAGCGTG 1496 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1434 CATCATTTAACGCGGTCTTCACGTTTCCGCAAGAACGTGCGATTTTCACTCGAGAGCGTG 1493 Query 1497 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTACTCGGATCGCTCTCCA 1556 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1494 CGTCCGGTATGTACACACTCTCTTCTTACTTCATGGCCCATGTCCTCGGATCGCTCTCCA 1553 Query 1557 TGGAGCTCGTTCTTCCGGCAT-CATTCTTGACGTTCACTTATTGGATGGTCTATCTACGC 1615 ||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||| Sbjct 1554 TGGAGCTCGTTCTTCCGGC-TGCATTCTTGACGTTAACTTATTGGATGGTCGATCTACGC 1612 Query 1616 CCCGGGATAGTCCCATTCCTCCTCACCCTCTCCGTGCTTTTACTATACGTTTTAGCGTCA 1675 ||||| | | ||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1613 CCCGGTCTTGCCCCATTCCTCCTCACCCTCTCCGTGCTCTTACTATATGTTTTAGCGTCA 1672 Query 1676 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1673 CAAGGACTTGGACTTGCCCTTGGTGCAGCGATCATGGACGCTAAAAAAGCGTCTACAATC 1732 Query 1736 GTGACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTACGTCAACAAAGTGCCA 1795 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1733 GTAACCGTGACAATGCTAGCGTTTGTCTTAACCGGTGGTTACTATGTCAACAAAGTGCCA 1792 Query 1796 TCCGGAATGGTGTGGATGAAATACGTTTCCACGACGTTTTATTGTTACCGTCTTTTAGTG 1855 ||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||| Sbjct 1793 TCCGGAATGGTGTGGTTGAAATACGTCTCCACAACATTTTATTGTTACCGTCTTTTAGTG 1852 Query 1856 GC-GATCCAATACGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCAAAGGG 1914 || | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1853 GCTG-TCCAATATGGGAGTGGGGAAGAGATATTGCGAATGCTTGGATGTGATTCGAAGGG 1911 Query 1915 TAAGCAAGGAGCGAGTGCGGCGACATCGGCTGGATGTCGATTTGTGGAGGAGGAAGTGAT 1974 ||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| Sbjct 1912 TAAGCAAGGAGCGGGTGCGGCGACATCGGCTGGATGCCGGTTTGTGGAAGAGGAAGTGAT 1971 Query 1975 CGGAGATGTTGGGATGTGGACGAGCGTTGGTGttttgtttttgatgttttttGGGTATAG 2034 ||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1972 CGGAGATATTGGTCTATGGACGAGCGTTGGTGTTTTGTTTTTGATGTTTGTTGGGTATAG 2031 Query 2035 AGTATTGGCATATCTAGCTTTGAGACGTATCAAACATTAAATAAA 2079 |||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 2032 AGTATTGGCATATCTAGCTTTGAGGCGTATTAAACATTAAATAAA 2076 Score = 215 bits (116), Expect = 1e-54 Identities = 134/142 (94%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 2101 TTAAATAAAAATGAGTGGGT-AAATTTAATTTTTAGGG-TTCTAGTTCGGAATATTAAAA 2158 |||||||||||||||||||| ||||||| ||||||||| || || ||||||||||||| | Sbjct 2068 TTAAATAAAAATGAGTGGGTAAAATTTAGTTTTTAGGGCTT-TAATTCGGAATATTAAGA 2126 Query 2159 CGTCGCTAATTGTAATTTTGCGATTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2218 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2127 CGTCGCTAATTGTAATTTTGCGGTTTAGCGACGGGTTCAGTTTTTAACATGTGAAAATGA 2186 Query 2219 AAATGACAAGTATTTTTAATTG 2240 |||||||||||||||||| ||| Sbjct 2187 AAATGACAAGTATTTTTAGTTG 2208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85360239045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5