BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72020.1 Length=628 Score E Sequences producing significant alignments: (Bits) Value Ahg339423 jgi|Araly1|339423|fgenesh1_pg.C_scaffold_2001522 333 9e-91 > Ahg339423 jgi|Araly1|339423|fgenesh1_pg.C_scaffold_2001522 Length=384 Score = 333 bits (180), Expect = 9e-91 Identities = 200/209 (96%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177 GTGACTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACATGGTGGT 236 |||| |||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 166 GTGAGTAGAAGCTTCCACTCGACTGGAGTTAAGAAGATGAGCGGAGGAGGACA---TGAT 222 Query 237 TACGATGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA 296 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 TACGACGAATACTACCTCCACGCAAAACACATGTACAATTTGGACCGCATGAAGTACCAA 282 Query 297 GCTCTCAAGATGTCTCTCGGTGTATTCACCGCTTTCAGCATCGGTGTTGGGGTTCCTATC 356 ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 283 GCTCTCAAGATGTCTCTCGGTGTCTTTACCGCTTTCAGCATCGGTGTCGGGGTTCCTATC 342 Query 357 TTCGCAGTCGTTTTCCAGCAGAGGAAGAC 385 ||||||||||||||||||||||||||||| Sbjct 343 TTCGCAGTCGTTTTCCAGCAGAGGAAGAC 371 Score = 119 bits (64), Expect = 3e-26 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 105 ATGGCGTTGAGCACCAGCATCAGATCTGTATCTAAGATCATTGCTTCTTCCGAAGCATCA 164 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1 ATGGCGTTGAGCACCAGCATCAGATCTGTCTCTAAGATCATTGCTTCATCCGAAGCATCA 60 Query 165 GTCTCCAGATCTG 177 || |||||||||| Sbjct 61 GTTTCCAGATCTG 73 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22988118951 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5