BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72100.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476340 jgi|Araly1|476340|fgenesh2_kg.2__1470__AT1G72100.1 1247 0.0
> Ahg476340 jgi|Araly1|476340|fgenesh2_kg.2__1470__AT1G72100.1
Length=1520
Score = 1247 bits (675), Expect = 0.0
Identities = 767/812 (94%), Gaps = 3/812 (0%)
Strand=Plus/Plus
Query 672 GCCCATGATGCGAAAGAGAGTGTGGCTGATAAAGCCCATGATGCGAAAGAGAGTGTGGCT 731
|||||||||| |||||||||||| || |||||||||||||||| ||||||||||| ||
Sbjct 636 GCCCATGATGTGAAAGAGAGTGTAGCCCATAAAGCCCATGATGCTAAAGAGAGTGTAGCC 695
Query 732 CAGAAAGCCCATGATGCTAAAGAGAAGGTAAGAGAGAAAGCTCATGATGTGAAGGAGACG 791
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 696 CATAAAGCCCATGATGCTAAAGAGAAGGTAAGAGAGAAAGCTCATGACGTCAAGGAGACG 755
Query 792 GTAGCCCAAAAAGCCCATGAATCGAAAGAGAGGGCAAAAGATAGAGTGAGGGAGAAGGCA 851
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATAGCCCAAAAAGCCCATGAATCGAAAGAGAGGGCAAAAGATAGAGTGAGGGAGAAGGCA 815
Query 852 CAAGAATTGAAGGAAACGGCTACTCATAAGTCTAAGAACGCGTGGGAGAGAGTTAAGAAT 911
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 816 CAAGAATTGAAGGAAACGGCTGCTCATAAGTCTAAGAACGTGTGGGAGAGAGTTAAGAAT 875
Query 912 GGGGCGCGTGAGTTCGGGTCAGCCACAGCAGCGACGTTGAGTCCGACTAAGGTAGCGAGC 971
| | |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 876 GCGACGCGTGAGTTTGGGTCAGCGACAGCAGCGACGTTGAGTCCGACTAAGGTAGCAAGC 935
Query 972 ATTGTGGGGTTGACGGGGATAGCGGCAGCATTTGGGACTTCCGTGTGGGTGACGTTTGTG 1031
|| ||||||||||| | ||| ||||| || |||||||||||||||||||| |||||||||
Sbjct 936 ATGGTGGGGTTGACCGCGATTGCGGCTGCGTTTGGGACTTCCGTGTGGGTTACGTTTGTG 995
Query 1032 TCAAGCTACGTTTTAGCCTCAGTGTTGGGGAGGCAACAGTTTGGTGTTGTGCAGAGTAAG 1091
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 996 TCAAGCTACGTTTTAGCCTCGGTGTTGGGGAGGCAACAGTTTGGGGTTGTGCAGAGTAAG 1055
Query 1092 CTGTATCCTGTTTACTTCAAGGCGACCTCTGTGGGAATCCTTGTGGGTTTGTTTGGTCAC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CTGTATCCTGTTTACTTCAAGGCGACCTCTGTGGGAATCCTTGTGGGTTTGTTTGGTCAC 1115
Query 1152 GTGCTTAGCAGGCGGAGGAAACTCCTTACCGATGCAACGGAGATGTGGCAAGGGGTTAAC 1211
||||||||| || |||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1116 GTGCTTAGCCGGAGGAGGAAACTACTTACCGACGCGACGGAGATGTGGCAAGGGGTTAAC 1175
Query 1212 CTCTTGTCCTCTTTCTTTATGATCGAGGCTAATAAGTCATTTGTTGAGCCACGTGCCACG 1271
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1176 CTCTTGTCCTCTTTCTTTATGATCGAGGCTAATAAGTCATTTGTCGAGCCACGTGCCACC 1235
Query 1272 AAGGCGATGTTTgagagaatgaaggccgaaaaggaagaaggaagaggaggagagaggacg 1331
||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| | |||
Sbjct 1236 AAGGCGATGTTTGAGCGAATGAAGGCAGAAAAAGAAGAAGGAAGAGGAG-AGAG-G-ACG 1292
Query 1332 agtgagcaggagctaaggCGGAAATTGGAGCAGCTGAGTGAGAGGCTGAGCAAGCTCAAC 1391
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1293 AGTGAGCAGGAGCTAAGGCGGAAATTGGAGCAGCTGAGCGAGAGGCTGAGCAAGCTCAAC 1352
Query 1392 ACGTACTCCTCTTGGTTGAATATATTGACGCTTATGTCTCTAACCTGGCACTTTGTTTAT 1451
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1353 ACGTACTCCTCTTGGTTGAATATATTGACGCTTATGTCTCTCACCTGGCACTTTGTTTAT 1412
Query 1452 CTCGGTCAGAGACTCGGCGCCGCTTGTTGATC 1483
|| || |||||||||||| |||||||||||||
Sbjct 1413 CTTGGCCAGAGACTCGGCACCGCTTGTTGATC 1444
Score = 1033 bits (559), Expect = 0.0
Identities = 671/725 (93%), Gaps = 7/725 (1%)
Strand=Plus/Plus
Query 1 ATATGAAGAGAGGAGGAAACAACACCGATAAGTAAGTAATGACGAATCTTTTGGCCTTGT 60
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATATGAAGAGAGGAGGAAACATCACCGATAAGTAAGTAATGACGAATCTTCTGGCCTTGT 60
Query 61 GTCTTGTCTTGAGCACTTTACTAGCGGCGGAGGTATGGTCTCCGAGTCCAGCCATGACCA 120
||||| |||||| |||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 61 GTCTTTTCTTGACCACTTTACTAGCGGCGGAGGTATGGTCTCCCAGCCCAGCCACGACCA 120
Query 121 CCCACA-ACACGGCGGTGGCGTCAGAGGGAGAAGTCATCGTCAAAGACGGACACCACGTT 179
|||||| | || || | |||| |||||||| |||||||||||||| || |||| ||
Sbjct 121 CCCACATA-AC-GC--CGCCGTCGGAGGGAGACGTCATCGTCAAAGATGGCCACCGTGTA 176
Query 180 GTGGTGGTTGAGTACGATCGCGACGGGAAAACCAATACCAGAGTCTCGATCTCGCCACCA 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 GTGGTGGTTGAGTACGATCGCGACGGGAAAACTAATACCAGAGTCTCGATCTCGCCACCA 236
Query 240 TCGGCAGATCAAGGAGAAGAAAAAGAGAATGAAGTAGAGATGGGAACTTCTATGTTTAGA 299
|||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 237 TCGGCAGATCAAGGAGAAGAAAAAGAGAATGAAGAAGAGAAGGGAACTTCTTTGATTAGA 296
Query 300 AATGTTAAAGAGAAAGCTAAAGAAACGGCGTCGTATCTTCCACACGTCGGCCAAGGAATC 359
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 AATGTTAAAGAGAAAGCAAAAGAAACGGCGTCGTATCTTCCACATGTCGGCCAAGGAATC 356
Query 360 TCCCAGCCGGTGATGACAGACGAGGCGCGTGATCACCACGCGACGGCTGGGGAAGTCATA 419
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 357 TCGCAGCCGGTGATGACAGAGGAGGCGCGTGATCACCACGCGACGGCTGGGGAAGTTATA 416
Query 420 TGCGATGCGTTCGGCAAGTGCAGGCAGAAGATCGCGAGTGTGGTAGGTCGGGCTAAAGAC 479
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 TGCGACGCGTTCGGTAAGTGCAGGCAGAAGATCGCGAGTGTGGTCGGTCGGGCTAAAGAC 476
Query 480 CGCACCGTTGATTCCGTCGGCGAGACAGCTTCTGATGTCA-GAGAAGCCGCCGCTCATAA 538
|| || | ||||||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 477 CGAACGGCCGATTCCGTCGGCGAGACTGCTTCTGATGT-AGGAGAAGCCGCGGCTCAGAA 535
Query 539 GGCTCACGATGTGAAGGAAACGGTTACACATGCGGCACGTGACGTGGAAGACACGGTGGC 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGCTCACGATGTGAAGGAGACGGTTACACATGCGGCACGTGACGTGGAAGACACGGTGGC 595
Query 599 TGATCAAGCCCAGTATGCTAAGGGTAGGGTAACAGAAAAGGCCCATGATCCGAAAGAGGG 658
|||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| |
Sbjct 596 TGATCAAGCCCAGTATGCTAAGGGTAAGGTAACAGAGAAGGCCCATGATGTGAAAGAGAG 655
Query 659 TGTAGCCCATAAAGCCCATGATGCGAAAGAGAGTGTGGCTGATAAAGCCCATGATGCGAA 718
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 656 TGTAGCCCATAAAGCCCATGATGCTAAAGAGAGTGTAGCCCATAAAGCCCATGATGCTAA 715
Query 719 AGAGA 723
|||||
Sbjct 716 AGAGA 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5