BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72110.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476341 jgi|Araly1|476341|fgenesh2_kg.2__1471__AT1G72110.1 1406 0.0
> Ahg476341 jgi|Araly1|476341|fgenesh2_kg.2__1471__AT1G72110.1
Length=1302
Score = 1406 bits (761), Expect = 0.0
Identities = 937/1017 (92%), Gaps = 32/1017 (3%)
Strand=Plus/Plus
Query 57 ATGGCAATAGAAAGGCAAG---TGACGGAAGCAGAGGAGCCAGTAAGTCCATTTGCACGC 113
||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAATAGAAAGGCAAGTATTGTCGGAAGGAGAGGAGCCAGTAAGTCCATTTGCACGG 60
Query 114 TTGTTTAGCTTGCCGGGTCTCGATGTCTTCAACATTGTAACCATTGGATGCAAAACCGAA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTTTAGCTTGCCGGGTCTCGATGTCTTCAACATTGTAACCATTGGATGCAAAACCGAA 120
Query 174 GGCAATGCCTCAACCATCGTCGAAGGCATAAAGAACACATTGATCAACCATCCACGCTTC 233
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCAATGCATCAACCATCGTTGAAGGCATAAAGAACACATTGATCAACCATCCACGCTTC 180
Query 234 TCTAGCATACTGGTGACTGGTCATGGTGAGCACAAAGGAAAAGCTAGATGGATTCCAACG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTAGCATACTGGTGACTGGTCATGGTGAGCACAAAGGAAAAGCTAGATGGATTCCAACG 240
Query 294 AAAATAAACGTAGAAGAGCATGTCATTGTTCCGGATATAGATCCCAACATTGAGAATCCT 353
|| |||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct 241 GAAGTAAAAGTAGAAGAACATGTAATTGTTCCGGATATAGATCCCAGTATTGAGAATCCT 300
Query 354 GATGAGTTTCTTGAAGATTATACATCAAACATGGCTCTTTCTCCAATGGATATGTCCAAA 413
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGAATTTCTTGAGGATTATACATCAAACATGGCTCTTTCTCCAATGGATATGTCCAAA 360
Query 414 CCTTTATGGGAGTTTCATTTATTGAAACTTAAAACATCACATGCGGAAGCTGTGACCGTG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTTTATGGGAGTTTCATTTATTGAAACTTAAAACATCACATGCGGAAGCTGTGACCGTG 420
Query 474 GCTAGGTTCCATCATTCTTTGGGCGACGGAATGTCTCTTATGTCTCTTTTACTCGCTTGT 533
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GCTAGGTTCCATCATTCTTTGGGCGACGGGATGTCTCTTATGTCTCTTTTACTCGCTTGT 480
Query 534 ACTCGGAAAACATGTGATCCCGAGGCATTCCCCACTTTTGTGGCTCCGAAGAAAAACAAA 593
|||||||||||||||||| |||||||||| || |||||||||||||||||||||| ||||
Sbjct 481 ACTCGGAAAACATGTGATGCCGAGGCATTGCCTACTTTTGTGGCTCCGAAGAAAAGCAAA 540
Query 594 GCGAAGAACGTTTGTTTTTCTTTGGTAGCTTGGTTATGGTTCATAGTAAGACTTATGTTC 653
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 541 GCGAAGAACGTTTGCTTTTCTTTGGTTGCTTGGTTATGGTTCATAGTAAGACTTGTGTTC 600
Query 654 CACACTTGTGTTGAAGTCATCAAGTCTATAGTTTTTATATGTCGTGCGAGTGACACCTCA 713
||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||
Sbjct 601 CACACTTGTGTTGAAGTTATCAAGTCTAT--TTTTG-TATGTCGTGCGAGGGACACCTCA 657
Query 714 GCTCATATAATGGGAAAACCAGGAGCTACACTTAGCGCTAATAAGTTCATTCATCGAATC 773
|||||||||||||| |||||||||||||||||| || |||||||||| ||||||| ||||
Sbjct 658 GCTCATATAATGGGTAAACCAGGAGCTACACTTGGCACTAATAAGTTTATTCATCAAATC 717
Query 774 ATTAGTTTAGATGATGTCAAAATGGTGAAGAACGCCATGAAT---ATGACTGTAAATGAT 830
|||||||| ||||||||||||||||||||||||||||||||| |||| | | | || |
Sbjct 718 ATTAGTTTGGATGATGTCAAAATGGTGAAGAACGCCATGAATGTGATGATTTTTA-TGTT 776
Query 831 GTT-CT-T-TTTGGGATGGTACAAGCTGGTCTTTCTCGATATTTGAACCAAAGATATGAT 887
|| || | ||| || || | |||||||||||||||||||||||||||||||||||
Sbjct 777 TTTTCTCTCTTTTCTAT--TAGACTCTGGTCTTTCTCGATATTTGAACCAAAGATATGAT 834
Query 888 CTTGAAACATCTTCAAAGTCAAGAAAAAATCTACACAATATCGGTCTTCATGGTGTTGTT 947
||||||||||| |||||| ||||||||||||| | | |||||||||||
Sbjct 835 CTTGAAACATCCTCAAAGACAAGAAAAAATCT------T--C-------ATGGTGTTGTT 879
Query 948 TTCTTTAATCTAAGGCCAAATAGAAATATTGAGGATTTGGCTAAA-ATGATGGCAAAAGG 1006
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 880 TTTTTTAATCTAAGGCCAAATAGAAATATTGAGGATTTGGC-AAATATGATGGCAAAAGG 938
Query 1007 TTCAAAGTGTAGATGGGGAAACTCAATAGGTTATGTTCTGATTCCTTTGGGGATGAA 1063
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 939 TTCAAAGTGTAGATGGGGAAACTCAATAGGTTATGTTCTGATTCCCCTGGAGATGAA 995
Score = 484 bits (262), Expect = 7e-136
Identities = 293/308 (95%), Gaps = 2/308 (1%)
Strand=Plus/Plus
Query 1214 AATATTT-GGTAGCACAACAATGATATTCTCAAATGTGGTTGGTCCAGACGAAGAAATTA 1272
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 996 AAT-TTTCGGTAGCACAACAATGATATTCTCAAATGTGGTTGGTCCAGCCGAAGAAATTA 1054
Query 1273 GCTTTTTTGGCCATCGAATAGCTTACATTGCTGCAAGTACCTTTGGTGTCCCACAGGCAC 1332
||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1055 GCTTTTTTGGCCATCAAATATCTTACATTGCTGCAAGTACCTTTGGTATCCCACAGGCAC 1114
Query 1333 TCAATATCTGTATTCAAAGCTATGTGGACAAACTTATAATCAACATTGGGGTTGATGTAG 1392
||| |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1115 TCATTATCGGTATTCAAAGCTATGTGGATAAACTTATAATCAACATTGGAGTTGATGTAG 1174
Query 1393 ACGTGATTCCAGACCCTCATCACCTTTGTGATCTCATCATTGAAGCTCTCCGCATGATGA 1452
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1175 ACGTGATTCCAGACCCTCATCACCTTTGTGATCTCATCATCGAAGCTCTCCGCATGATGA 1234
Query 1453 ATTCTGCTGCTCCAAAAAAGGTTTTTCATGCTTCAAAGGTTTAAACGAAATGTTTGGCGT 1512
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1235 ATTCTGCTGCTCCAAAAAAGATTTTTCATGCTTCAAAGGTTTAAACGAAACGTTTGGCGT 1294
Query 1513 ACAAAAGA 1520
||||||
Sbjct 1295 GGAAAAGA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5