BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72180.1 Length=3593 Score E Sequences producing significant alignments: (Bits) Value Ahg476351 jgi|Araly1|476351|fgenesh2_kg.2__1481__AT1G72180.1 5238 0.0 > Ahg476351 jgi|Araly1|476351|fgenesh2_kg.2__1481__AT1G72180.1 Length=3539 Score = 5238 bits (2836), Expect = 0.0 Identities = 3319/3552 (93%), Gaps = 33/3552 (1%) Strand=Plus/Plus Query 21 tctcctctcttctcaaatctctctctctTTCGTATTTCTTGGAGACATCTTTCTCTGGAA 80 ||| || ||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 10 TCT-CTTTCTTCTCTCCTCTCTCTCTCTTTCGTATTTCTTGGAGACATCTTTCTCTGTAA 68 Query 81 CTGTTCTTCATCGAATTCTATCTTTTGAGAGAAACTAAATTAAGTTGATAATCGAAGAAC 140 ||||||||||||||||||||||||||||||||||||||| | || |||||||||||| || Sbjct 69 CTGTTCTTCATCGAATTCTATCTTTTGAGAGAAACTAAA-TCAGCTGATAATCGAAGCAC 127 Query 141 TTCCTCGAAATTAGGACTTCTTC-TGCTTTTTGTTGTTTCCTAGAGATTTTCCTAGAACG 199 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 128 TTCCTCGAAATTAGGACTTCTTCTTGCTTTTTGTTGTTACCTAGAGATTTTCCTAGAAAG 187 Query 200 TGGTCCAAGAAAATCACACAAAAAGGTTCATTCCTTTTTTCTTACCAGAAACCACAAATC 259 | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 188 TTGTCCAAGAAAATCACACAAAAAGGTTCATT-TTTTTTTCTTACCAGAAACCACAAATC 246 Query 260 AAAATCATCTCCCCTGTCTTTGTTTGAAATCTCTCAAATTTAAGAAGGATCATCCATTCA 319 ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||| Sbjct 247 AAAATCATCTCCCCTGTTTTTATCTGAAATCTCTCAAATTTAAGAAGGATCATTCATTCA 306 Query 320 CTAACCTGAGATTTTGGATAGGTT-TCATCTATTTCAGGTGGGAATTCCAGTGCATCGAC 378 | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 307 CCAACCTGAGATTTTGGAT-TGTTATCATCTATTTCAGGTGGGAATTCCAGTGCATCGAC 365 Query 379 CATGATCAACACCTAAACTACAAATTGACCGTTTTGCCCTTGGGAATCACTATAAATGTC 438 ||||||||| |||||| || | |||||||||||||||||||| ||||||| ||||||||| Sbjct 366 CATGATCAAGACCTAACCTGCGAATTGACCGTTTTGCCCTTGAGAATCACCATAAATGTC 425 Query 439 GAGAAGACCAGACCTCCTACGTGGCAGCGTGGTCGCCACCGTGGCTGCCACGTTTCTCCT 498 |||||||||||||||||||||||||| || |||| ||||||||||||||| |||| | Sbjct 426 GAGAAGACCAGACCTCCTACGTGGCAAAATGCTCGCTACCGTGGCTGCCACGATTCTGTT 485 Query 499 CTTC-ATTTTCCCGCCGAATGTTGAATCGACCGTTGAGAAACAAGCTCTGTTTCGCTTCA 557 | || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 C-TCAATGTTCCCGCCAAATGTTGAATCGACCGTTGAGAAACAAGCTCTGTTTCGCTTCA 544 Query 558 AAAACCGCCTCGACGACTCTCACAACATTCTACAATCTTGGAAGCCTTCCGATTCACCAT 617 |||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||| || | Sbjct 545 AAAACCACCTCGACGACCCTCACAACATTCTACAATCTTGGAAACCTTCGGATTCGCCGT 604 Query 618 GCGTGTTTCGCGGCATCACATGCGACCCGTTATCCGGCGAAGTCATCGGTATTTCTCTAG 677 |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||| Sbjct 605 GCGTGTTTCGCGGCATAACATGCGATCCGTTATCCGGCGAAGTTATAGGTATTTCTCTAG 664 Query 678 GAAACGTAAATCTCTCCGGCACCATTTCTCCATCAATCTCAGCTCTCACAAAGCTCTCTA 737 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 GAAACGCAAATCTCTCCGGCACCATTTCTCCATCAATCTCAGCTCTCACAAAGCTCTCTA 724 Query 738 CGCTATCGCTTCCATCTAACTTCATCTCCGGAAGAATCCCGCCAGAGATAGTCAACTGCA 797 | | || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 725 CATTGTCACTTCCATCTAACTTCATCTCCGGAAGAATCCCGCCAGAGATAGTCAACTGTA 784 Query 798 AAAACCTTAAAGTTCTCAATCTCACCTCCAACAGACTCTCCGGAACAATCCCAAACCTTT 857 ||||||| ||||| |||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 785 AAAACCTGAAAGTCCTCAATCTCACCTCCAACCGAGTCTCCGGGACGATCCCAAACCTTT 844 Query 858 CTCCTCTAAAGTCCCTAGAAATTCTCGACATCTCCGGGAATTTTCTTAACGGAGAGTTTC 917 | ||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 845 CCCCTCTAAAGAACTTAGAAATTCTCGACATCTCTGGGAACTTTCTTACCGGAGAGTTTC 904 Query 918 AAAGCTGGATTGGGAATATGAATCAGTTGGTTTCTCTCGGTCTTGGCAACAATCACTACG 977 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 905 AAAGTTGGATTGGGAATATGACTCAGTTGGTTTCTCTCGGTCTTGGCAACAATCACTACG 964 Query 978 AAGAAGGTATAATTCCTGAGAGTATTGGAGGTTTAAAGAAACTTACTTGGCTGTTCTTAG 1037 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 965 AAGAAGGTATGATTCCTGAGAGTATTGGAGGTTTAAAGAAACTGACTTGGCTGTTCTTAG 1024 Query 1038 CTCGCTCCAACTTGACCGGGAAGATTCCAAACTCGATCTTTGATCTGAATGCTCTCGACA 1097 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1025 CTCGCTCCAACTTGACCGGGAAGATTCCAAACTCTATCTTTGATCTGAATGCTCTCGACA 1084 Query 1098 CTTTCGACATCGCGAACAACGCAATCTCCGATGATTTCCCAATCTTAATCTCAAGATTGG 1157 ||||||||||||| ||||||||||| || | |||||||||| |||| ||| ||||||||| Sbjct 1085 CTTTCGACATCGCAAACAACGCAATTTCTGGTGATTTCCCAGTCTTGATCACAAGATTGG 1144 Query 1158 TAAATCTCACCAAGATTGAGTTGTTCAACAACAGCTTAACAGGTAAAATCCCTCCGGAGA 1217 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 1145 TAAATCTCACCAAGATTGAGTTGTTCAACAACAGATTAACCGGTAAAATCCCTCCCGAGA 1204 Query 1218 TAAAGAACTTGACTCGTTTACGCGAATTCGACATCTCTTCGAATCAGTTGAGCGGGGTTT 1277 |||||||||||||||||||||||||| |||| | |||||||||||||||||||| | || Sbjct 1205 TAAAGAACTTGACTCGTTTACGCGAAATCGATGTTTCTTCGAATCAGTTGAGCGGTGCTT 1264 Query 1278 TACCTGAAGAACTCGGAGTTTTGAAGGAGCTCAGAGTTTTCCACTGTCATGAAAACAACT 1337 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1265 TACCTGAAGAACTCGGAGTTTTGAAGGAGCTCAGAGTTTTCCACTGCCATGAAAACAACT 1324 Query 1338 TCACCGGCGAATTTCCTTCTGGTTTCGGCGATCTA-AGTCACCTCACTTCTCTTTCGATT 1396 | ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1325 TTACCGGCGAATTCCCTTCTGGTTTCGGCGATCTACA-TCACCTCACTTCTCTTTCGATT 1383 Query 1397 TATAGAAACAACTTCTCCGGTGAATTTCCGGTTAACATCGGCCGGTTCTCGCCGCTCGAC 1456 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| Sbjct 1384 TATAGAAACAACTTCTCCGGTGAATTTCCGGTTAACATCGGTCGGTTCTCGCTGCTTGAC 1443 Query 1457 ACGGTTGATATATCTGAAAACGAGTTTACTGGTCCATTTCCAAGATTCTTATGCCAAAAC 1516 |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1444 ACGGTTGACATATCTGAGAACGAGTTTACTGGTCCGTTTCCAAGATTCTTATGCCAAAAC 1503 Query 1517 AAGAAACTACAATTCTTGCTCGCCT-TGCAGAACGAGTTTTCCGGCGAGATTCCGAGATC 1575 ||||||||||| |||||||||| || |||||||||| |||||||| |||||||||||||| Sbjct 1504 AAGAAACTACAGTTCTTGCTCG-CTCTGCAGAACGATTTTTCCGGTGAGATTCCGAGATC 1562 Query 1576 TTACGGC-GAGTGCAAATCTCTATTGAGACTAAGGATTAACAACAACCGTCTAAGTGGTC 1634 ||| || || || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1563 CTAC-GCTGATTGTAAATCTCTATTGAGACTAAGGATTAACAAAAACCGTCTAAGTGGTC 1621 Query 1635 AAGTTGTTGAAGGATTCTGGTCTCTACCGCTTGCTAAGATGATTGATCTCAGCGATAACG 1694 | |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 1622 ATGTTGCTGAAGGATTCTGGTCTCTACCACTTGCTAAGATGCTTGATCTCAGCGATAACG 1681 Query 1695 AACTCACCGGAGAGGTTTCTCCTCAGATTGGACTTTCAACAGAACTGAGTCAGCTCATTT 1754 |||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||| Sbjct 1682 AACTCACCGGAGAGATTTCTCCTCAGATCGGACTTTCAACGGAATTGAGTCAGCTCATTT 1741 Query 1755 TACAGAACAACAGATTTTCCGGCAAGATTCCTCGTGAGCTCGGAAGATTGACTAATATAG 1814 | |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1742 TGCAGAACAATAGATTTTCCGGCAAGATTCCTCGTGAACTCGGAAGATTGACGAATATAG 1801 Query 1815 AGAGGATTTATCTGAGCAACAACAATCTTTCCGGCGAAATTCCGATGGAAGTTGGAGATT 1874 ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 1802 AGAGGATTTATCTGAGCAACAACAAAATTTCCGGCGAAATTCCGACGGAAGTTGGAGATT 1861 Query 1875 TGAAAGAGTTATCATCTCTGCATCTTGAAAACAATTCATTAACAGGATTTATCCCTAAGG 1934 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1862 TGAAAGAGTTATCGTCTCTGCATCTTGAAAACAATTCATTAACAGGATTTATTCCTGTCG 1921 Query 1935 AATTGAAGAATTGTGTCAAACTTGTTGATCTGAATCTCGCTAAGAACTTCTTGACCGGAG 1994 |||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 1922 AATTGACGAATTGTGTCAAACTTGTTGATCTAAATCTCGCCAAGAACTTCTTGACAGGAG 1981 Query 1995 AAATCCCTAACAGTTTATCTCAGATTGCTTCTTTAAACTCGTTGGATTTCTCAGGGAATA 2054 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1982 AAATCCCCAATAGTTTATCTCAGATTGCTTCTTTAAACTCGTTGGACTTCTCAGGGAACA 2041 Query 2055 GGCTAACAGGTGAAATCCCGGCGAGTCTTGTGAAGTTGAAGCTGAGTTTCATTGACTTGT 2114 |||||| ||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 2042 AGCTAACGGGTGAAATCCCGGCGAGTCTTGTGAAGTTGAAGCTGAGTTTTATCGATTTGT 2101 Query 2115 CTGGAAATCAACTTTCAGGAAGAATACCACCGGATCTTTTAGCGGTGGGAGGATCCACCG 2174 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2102 CTGGAAATCAACTTTCAGGGAGAATACCACCGGATCTTTTAGCGGTGGGAGGATCCACCG 2161 Query 2175 CGTTCTCACGTAACGAGAAGCTCTGTGTTGATAAAGAGAACGCTAAAACAAATCAGAACT 2234 ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 2162 CGTTCTCACGTAACGAGAAGCTCTGTGTTGATAAACAGAACGCTAAAACAAGCCAGAACT 2221 Query 2235 TGGGGTTGAGTATTTGCAGTGGCTACCAAAACGTGAAGAGGAATAGTTCACTCGATGGAA 2294 |||||||||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||| Sbjct 2222 TGGGGTTGAGCATTTGCAGTGGCGACCAACACGTGCAGAGGAATGGTTCACTCGATGGAA 2281 Query 2295 CACTCTTGTTCTTGGCTCTTGCAATTGTTGTGGTAGTACTAG-TGAGTGGTTTGTTCGCG 2353 |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| Sbjct 2282 CACTCTTGTTCTTGGCTCTTGCAATTGTTGTGGTAGTACTCGTTG-CTGGTTTGTTCGCG 2340 Query 2354 TTGCGTTACAGAGTTGTGAAGATACGTGAGCTTGATTCGGAAAACAGAGATATCAACAAG 2413 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||| Sbjct 2341 TTGCGTTACAGAGTTGTGAAGATGCGCGAGCTTGATTCGGAAAACAGAGATATTAATAAG 2400 Query 2414 GCGGATGCGAAGTGGAAAATCGCGTCTTTTCATCAAATGGAGTTGGACGTTGATGAGATT 2473 ||||||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||| Sbjct 2401 GCGGATGCGAAATGGAAAATCGCGTCTTTTCATCAAATGGAGCTGGACGCTGACGAGATT 2460 Query 2474 TGTAGATTGGATGAAGATCATGTGATTGGATCTGGAAGTGCAGGAAAAGTGTACCGTGTT 2533 |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| Sbjct 2461 TGTAGATTGGATGAAGATCATGTGATCGGAGCTGGAAGTGCGGGAAAAGTGTACCGTGTT 2520 Query 2534 GATTTGAAAAAAGGTGGCGGGACAGTGGCGGTTAAGTGGTTGAAGAGAGGAGGAGGAGAA 2593 ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||||||| Sbjct 2521 GATTTGAAAAAGGGTGGCGGGACAGTGGCGGTTAAGTGGTTAAAGCGAGCAGGAGGAGAA 2580 Query 2594 GAAGGTGATGGAACAGAGGTCTCTGTTGCGGAGATGGAGATTCTTGGAAAGATTAGACAC 2653 |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2581 GAAGTTGACGGAACAGAGGTCTCTGTTGCGGAGATGGAGATTCTTGGAAAGATCAGACAC 2640 Query 2654 AGAAACGTGTTGAAACTCTACGCTTGTTTGGTTGGAAGAGGTTCTAGATATTTGGTGTTT 2713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2641 AGAAACGTGTTGAAACTCTACGCTTGTTTGGTTGGAAGAGGTTCTAGATATTTGGTGTTT 2700 Query 2714 GAGTTCATGGAGAATGGGAACTTGTATCAAGCTCTTGGCAACAATATTAAAGGCGGTCTA 2773 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 2701 GAGTTCATGGAGAATGGGAACTTGTATCAGGCTCTTCGCAACAATATTAAAGGCGGTCTA 2760 Query 2774 CCAGAACTGGATTGGCTCAAAAGATATAAAATTGCGGTGGGAGCGGCAAAAGGAATCGCA 2833 |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 2761 CCAGAATTGGATTGGCTCAAAAGATATAAAATCGCGGTGGGAGCGGCTAAAGGAATCGCA 2820 Query 2834 TATTTGCATCATGATTGTTGTCCACCCATCATTCACAGAGATATAAAGTCAAGCAACATT 2893 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 2821 TATTTGCATCATGATTGTTGTCCTCCAATCATTCACAGAGATATAAAGTCGAGCAACATT 2880 Query 2894 TTACTTGACGGAGATTATGAGTCGAAAATCGCAGATTTTGGAGTTGCAAAAGTTGCAGAC 2953 || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2881 TTGCTTGATGGAGATTATGAGTCGAAAATTGCAGATTTTGGAGTTGCAAAAGTTGCAGAC 2940 Query 2954 AAAGGATATGAATGGAGCTGCGTTGCTGGAACTCATGGCTATATGGCTCCTGAGCTGGCT 3013 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 2941 AAAGGATATGAATGGAGCTGTGTTGCTGGAACTCATGGCTATATGGCTCCTGAACTGGCT 3000 Query 3014 TACTCCTTCAAGGCAACGGAAAAGAGTGATGTGTACAGCTTCGGTGTGGTTCTTCTAGAG 3073 |||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct 3001 TACTCCTTCAAGGCGACGGAGAAGAGTGACGTGTACAGCTTTGGTGTGGTTCTTCTAGAG 3060 Query 3074 CTAGTTACCGGTCTTCGGCCTATGGAAGACGAGTTTGGAGAGGGGAAAGACATTGTTGAC 3133 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 3061 CTAGTTACCGGTCTTCGGCCTATGGAAGATGAGTTCGGAGAGGGGAAAGACATTGTTGAC 3120 Query 3134 TATGTCTACTCTCAGATTCAACAAGATCCGA-GGAACCTTCAAAATGTTTTGGACAAGCA 3192 |||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||| Sbjct 3121 TATGTCTACTCTCAGATTCAGCAAGATC-GAAGGAACCTTCGAAATGTTTTGGACAAGCA 3179 Query 3193 AGTTTTGTCCACTTATATAGAAGAAAGCATGATTAGAGTTCTGAAGATGGGTCTTCTCTG 3252 ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct 3180 AGTTTTGTCTTCTTATGTAGAAGAAAGCATGATTAGGGTTCTGAAGATGGGTCTTCTTTG 3239 Query 3253 CACTACGAAGCTCCCGAATCTCAGACCGAGTATGAGAGAGGTCGTGAGAAAGCTTGACGA 3312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3240 CACTACGAAGCTCCCGAATCTCAGACCGAGTATGAGAGAGGTCGTGAGAAAGCTTGACGA 3299 Query 3313 CGCTGATCCCTGTGTCTCCAATTCTCAAGACACAACTGGAAAGATTACAGTATAGATTGA 3372 ||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct 3300 TGCTGATCCCTGCGTCTCCAATTCTCTAGACAGAACCGGAAAGATTACAGTATAGATTGA 3359 Query 3373 TGA-TTCACCTACCACGTTTTAGTTATGGTTAAGACTAGTCACTGGTCAAAGAAGTATCA 3431 | | |||| || | | || ||||||||||||||||||||||| ||||||||| Sbjct 3360 T-ACTTCA---AC----T---A-TT-TGGTTAAGACTAGTCACTGGTCACAGAAGTATCG 3406 Query 3432 GTTTGTTCGAGACTTGAGTAAAAGTACGAGAGATTGGTTTTTGCTTATTTACTAATCCGT 3491 |||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 3407 GTTTGTTCGAAACTCGAGTAAAAGTACGAGAGATTAGTTTTTGTTTATTTACTAATCCGT 3466 Query 3492 TGTACTAAAAAGTTTGCAGTGAAAGGTCGGAGTTATCAGAAAGAGAC-TTGGATTAATTT 3550 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 3467 TGTACTAAAAAGTTTGCAGTGAAAGGTCGGAGTTATTAGAAAGAGACATTGGATTAATTT 3526 Query 3551 ATATTAACTACT 3562 |||||||||||| Sbjct 3527 ATATTAACTACT 3538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 135713305318 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5