BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72290.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926592 jgi|Araly1|926592|scaffold_202153.1 612 2e-174
Ahg926593 jgi|Araly1|926593|scaffold_202154.1 279 2e-74
> Ahg926592 jgi|Araly1|926592|scaffold_202153.1
Length=719
Score = 612 bits (331), Expect = 2e-174
Identities = 604/732 (83%), Gaps = 34/732 (5%)
Strand=Plus/Plus
Query 45 ACACACATAACAATCACAAATGAAGAATCCTTCAGTGATCTCTTTTCTCATCATTCTCCT 104
||||||| ||||||||| |||||||| |||||||| ||||||||||||||| ||||||
Sbjct 3 ACACACAAAACAATCAC-TATGAAGAAACCTTCAGTTCTCTCTTTTCTCATCACTCTCCT 61
Query 105 GTTTGCTGCAACTATTTGCACCCACGGAAATGAACCGGTGAAGGATACA-GCCGGAAATC 163
||| |||||| || | |||| ||||||| ||||||||||| || | | | ||| ||||
Sbjct 62 GTTGGCTGCAGCTGTCTGCATCCACGGAGGCGAACCGGTGAATGACA-AGGACGGGAATC 120
Query 164 CACTTAACAC-CCGCGAACAATACTTCATCCAGCCGGTTAAGACCGAGAGTAAAAACGGA 222
|| |||| || | | ||||||||||||||||||||||| ||| || ||| ||| |||||
Sbjct 121 CAGTTAA-ACTCGGTGAACAATACTTCATCCAGCCGGTGAAGTCCAAGACTAACAACGGC 179
Query 223 GGTGGTCTTGTCCCAGCCGCCATTA-CAGTACTT---CCCTTTTGTCCACTTGGCATCAC 278
||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 180 GGTGGTCTTGTCCCAGCCGCCATTAGTA-TACTTCCACCCTTTTGTCCACTTGGAATCAC 238
Query 279 CCAAACACTTCTTCCCTACCAACCCGGCCTACCGGTTAGCTTCGTATTAGC--AC-TTGG 335
||||||||| ||||| |||||||| |||||||||||||||||| |||| | || | |
Sbjct 239 CCAAACACTCCTTCCGTACCAACCGGGCCTACCGGTTAGCTTCACATTACCAGACGCTCG 298
Query 336 CGTAGG-ATCAACCGT-TATGACATCTTCGGCTGTAAACATCGAGTTCAAGTCCAACATC 393
| ||| | | ||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 299 AG-AGGAAACCTTCGTCCA-GACATCTTTAGCAGTAAACATCGAGTTCAAGTCCAACATC 356
Query 394 TGGCCGTTTTGCAAGGAGTTTTCCAAGTTTTGGGAAGTTGATGATTCCTCATCAGCTCCC 453
||| | | ||||| ||||||||||||||||||||||| |||| ||||||||| ||| |
Sbjct 357 TGG--G-TCTGCAATGAGTTTTCCAAGTTTTGGGAAGTCGATGTTTCCTCATCGGCTAGC 413
Query 454 AAGGAGCCT-TCAATTCTCATCGGTGGTAAAA-TGGGGGACCGAAATAGCTCGTTTAAGA 511
|||||||| ||| ||||||| ||||||| | | ||| |||||| | |||||||
Sbjct 414 GAGGAGCCTCTCA-TTCTCATTGGTGGTACCCCTCAGAAACC-AAATAGTTGGTTTAAGG 471
Query 512 TTGAGAAAGCTGGAGAAGGAGCTAG-AGCAAACGTTTATAAGTTGACCACCTTTTAC-GG 569
|||||||||| ||||||||||| || ||||||| ||| |||||||||||||| || ||
Sbjct 472 TTGAGAAAGCCGGAGAAGGAGC-AGGAGCAAACACTTACAAGTTGACCACCTTA-ACCGG 529
Query 570 AACCGTTGGAGCCATCCCAGGGGTTTGGTTAAGCGCACCACAACTAATTATCACCAAGGA 629
|||||||||| | | |||||||||||||| | ||||||||| | || || |||| ||
Sbjct 530 AACCGTTGGAACTAAGCCAGGGGTTTGGTTTGGTGCACCACAATTGGTTGTCCCCAATGA 589
Query 630 TACGGCTAAGACCTTACTCGTCAAATTCAAAAAGGTTGATGATG-CTACTACGGCTACTA 688
| |||||||| |||||||| |||||||||||||||| ||||||| | |||||||||||||
Sbjct 590 TGCGGCTAAGCCCTTACTCATCAAATTCAAAAAGGTGGATGATGTC-ACTACGGCTACTA 648
Query 689 GCAACTTATACTTCCCGGGTTGATAATTTAGGTCTAAGGATGTTCCCGTTCTACTAATCA 748
| || |||| | |||||||| || |||||||||||||||||||| |||||||| |||
Sbjct 649 -C---TTCTACTACTCGGGTTGAGAAGTTAGGTCTAAGGATGTTCCCATTCTACTAGTCA 704
Query 749 ACTGGTAAAAAT 760
||||||||||||
Sbjct 705 ACTGGTAAAAAT 716
> Ahg926593 jgi|Araly1|926593|scaffold_202154.1
Length=556
Score = 279 bits (151), Expect = 2e-74
Identities = 413/533 (77%), Gaps = 43/533 (8%)
Strand=Plus/Plus
Query 42 AAAACACACATAACAATCACAAATGAAGAATCCTTCAGTGATCTCTTTTCTCATCATTCT 101
|||||||| | ||||||||| ||||||||| ||||||||| ||||||||||||||| |||
Sbjct 2 AAAACACA-A-AACAATCAC-AATGAAGAAACCTTCAGTGGTCTCTTTTCTCATCACTCT 58
Query 102 CCTGTTTGCTGCAACTATTTGCACCCACGGAAATGAACCGGTGAAGGATACAGCCGGAAA 161
|||||| |||||| || | |||| ||||||| |||||||||||||| | | ||||||
Sbjct 59 CCTGTTGGCTGCAGCTGTCTGCATCCACGGAGGCGAACCGGTGAAGGACATTGTCGGAAA 118
Query 162 TCCA-CTTAACAC-CCGCGAACAATACTTCATCCAGCCGGTTAAGACCGAGAGTAAAAAC 219
| | ||||| || | | ||||||||||||||||||||||| || ||| | ||
Sbjct 119 T-TATCTTAA-ACTCGGTGAACAATACTTCATCCAGCCGGTAAATACC----G-----AC 167
Query 220 GGAGGTGGTCTTGTCCCAGCCGCCATTACAGTACTTCCCT-TTTGTCCACTTGGCATCAC 278
||||||||||||||||||||| || |||| || || ||| |||| ||||||||||||
Sbjct 168 GGAGGTGGTCTTGTCCCAGCCCCCCCTACAATA-TTTCCTCTTTGCCCACTTGGCATCGT 226
Query 279 CCAAACACTTCTTCCCTACCAACCCGGCCTA---CCGGTTAGCTTCGT-ATTAG-CACTT 333
|||||| || | ||| || ||||| ||| || ||||||||||| | | | | || |
Sbjct 227 CCAAACTCTCCATCCGTATCAACCTGGCGTACCGCCGGTTAGCTT-TTCAAT-GCCA-TA 283
Query 334 GGCG--TA-GG-ATCAACCG-TTATGACATCTTCGGCTGTAAACATCGAGTTCAAGTCCA 388
||| | || | | || | || | ||| | |||||||||||||||||||||||
Sbjct 284 CGCGAACATGGAAACTACTGTTTCT-ACAGATGATTATGTAAACATCGAGTTCAAGTCCA 342
Query 389 ACATCT-GGCCGTTTTGCAAGGAGTTTTCCAAGTTTTGGGAAGTTGATGATTCCTCATCA 447
|||||| |||| ||||| |||||||||||||||||| |||| ||||| |||||||
Sbjct 343 ACATCTGGGCC----TGCAATGAGTTTTCCAAGTTTTGGAAAGTCGATGAAACCTCATCG 398
Query 448 GCTCCCAAGGAGCCT-TCAATTCTCATCGGTGGTAAAATGGGGGA-CCGAAATAGCTCGT 505
||| | |||||||| ||| ||||| | ||||||| | | ||| || |||||| | ||
Sbjct 399 GCTAGCGAGGAGCCTCTCA-TTCTCGTTGGTGGTACACCGCAGGAACC-AAATAGTTGGT 456
Query 506 TTAAGATTGAGAAAGCTGGAGAAGGAGCTAGAGCAAAC-GTTTATAAGTTGAC 557
||||| |||| | || ||||||||||| |||||||| ||| | ||||||||
Sbjct 457 TTAAGGTTGACATTGCCGGAGAAGGAGCGGGAGCAAACAGTT-ACAAGTTGAC 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5