BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72340.1 Length=1302 Score E Sequences producing significant alignments: (Bits) Value Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1 1814 0.0 Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832 619 1e-176 > Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1 Length=1180 Score = 1814 bits (982), Expect = 0.0 Identities = 1119/1185 (94%), Gaps = 10/1185 (1%) Strand=Plus/Plus Query 10 aaaaaaaaaaaTCAATGTGGAGAAGATCACCGTCGTTTATTCTCGACGAGCGACGAAGCT 69 |||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||| Sbjct 1 AAAAAACAAAATCAATGTGGCGGAGATCACCGTCGTTTATCCTCGACGAGCGACGAAGCT 60 Query 70 CGAATTCACCTCCAATGGCGGATACAACACGAGGTCCTTTTCAAAACCCTGATTCCATCT 129 ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 61 CGAATTCACCTCCCATGGCCGATACAACACGAGGTCCCTTTCAAAACCCTGATTCGATCT 120 Query 130 CCGCTTATTACCAAACTCGCGCGGCGCATCACGGTGTCATTACAAGCGACTGGCTAGCCC 189 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 CCGCTTATTACCAAACCCGCGCGGCGCATCACGGTGTCATTACTAGCGACTGGCTAGCCC 180 Query 190 AAGCTCAAGCCGCCGTTGGCGGCGTCTCAGGCGATGCCCAGC-ATGACT-T-ATCCG-TA 245 |||||||||||||||||||||| ||| ||||||| | ||| || || | ||||| || Sbjct 181 AAGCTCAAGCCGCCGTTGGCGGGGTCACAGGCGAAG---AGCAATCTCTCTCATCCGATA 237 Query 246 ACTGATCTCGGGAAC-GAGAAGTCGTTTAATGTAATTGAAGAGTTCAATAACTGGAGAAA 304 | | | || |||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 238 A-TCAGCT-GGGAACGGAGAAGTCGTTTAATGTAATTGAAGAGTTCAACAACTGGAGAAA 295 Query 305 ACAACCGGATCTGGCTGAAGCCGTCGCGGCTATACGAGCTTTGGCTGCTGTTATTCGTGC 364 ||||||||||||||||| |||||||||||||| |||||| | ||||| ||||||||||| Sbjct 296 GCAACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTTATTCGTGC 355 Query 365 GAGCGAAGCGAGCACCATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACT 424 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GAGCGAAGCTAGCACTATGATGGAGCTTGAAATTGAGCTCAAAAAGGCTTCTGATACACT 415 Query 425 CAAGTCGTGGGACAAAACGTCGATCTCTTTGACAGCTGGATGCGATTTGTTTATCAGATA 484 ||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 416 CAAATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGTTTATCAGATA 475 Query 485 CGTTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCT 544 |||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 476 CGTTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGCAAAGTCTCGTCTTCT 535 Query 545 TGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCTCGTAGGATTATCGCAATGCT 604 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 536 TGAACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGATTATCGCAATGCT 595 Query 605 TAGTCAAGATTTTATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCTAGAGTTGT 664 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 596 TAGTCAAGATTTCATATTCGATGGTTGTACCATATTGGTTCATGGACTCTCAAGAGTTGT 655 Query 665 TCTGGAAATACTTAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGA 724 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 TCTGGAAATACTAAAGACTGCTGCACAAAACAACAAGCTCTTTCGAGTTCTCTGCACAGA 715 Query 725 GGGGAGGCCGGATGGAACAGGAGTTCTGTTATCGAGTGAGCTATCGAAGCTCGATATCCC 784 ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 716 GGGAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTATCGAAGCTTGATATCCC 775 Query 785 AGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGTATGGACGAGGTAGACATGGTGTT 844 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 776 AGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGACGAGGTAGACATGGTGTT 835 Query 845 TGTCGGGGCGGATGGAGTTGTAGAAAGTGGCGGTATTATCAACATGATGGGAACATACCA 904 | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 836 TTTCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAACATGATGGGAACATACCA 895 Query 905 AATCGCACTTGTGGCACACAGCATGAACAAACCGGTCTATGTTGCTGCTGAGAGTTACAA 964 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct 896 AATCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGTCGCCGCCGAGAGTTACAA 955 Query 965 GTTCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCGGCGTTGAGACCAATCGA 1024 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 956 GTTCGCTAGGCTTTACCCATTAGACCAAAAGGACATGGCACCAGCGCTGAGACCAATCGA 1015 Query 1025 ATTTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCC 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 ATTTGGTGTAAAGATTCCGACAAAGGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCC 1075 Query 1085 GCCTCAGTACCTAACACTCCTCTTCACTGACCTTGGTGTTCTCTCTCCCTCTGTAGTTAG 1144 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1076 GCCTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCGTTCTCTCTCCCTCTGTAGTTAG 1135 Query 1145 CGATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1189 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 CGATGAGCTTATTCAACTCTATCTCTAATTTCAACTCCTAATTAA 1180 > Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832 Length=1734 Score = 619 bits (335), Expect = 1e-176 Identities = 709/891 (80%), Gaps = 20/891 (2%) Strand=Plus/Plus Query 279 ATTGAAGAGTTCAATAACTGGAGAAAACAACCGGATCTGGCTGAAGCCGTCGCGGCTATA 338 ||||| ||||| |||| |||||| | ||||| ||| |||| || || || ||||| || Sbjct 841 ATTGAGGAGTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATT 900 Query 339 CGAGCT-TTGGCTGCTGTTATTCGTGCGAGCGAAGCGAGC-ACCATGATGGAGCTTGAAA 396 || ||| || || ||||| ||| | || || ||||||| | || |||||||| ||||||| Sbjct 901 CGTGCTCTT-GCGGCTGTAATTAGGGCTAGTGAAGCGA-CTACTATGATGGAACTTGAAA 958 Query 397 TTGAGCTCAA-AAAGGCTTCTGATACACTCAAGTCGTGGGACAAAACGTCGATCTCTTTG 455 |||| || || ||| ||||||||||| | || || ||||||| ||| || || || || Sbjct 959 TTGAACTTAAGAAA-GCTTCTGATACTTTGAAATCATGGGACACAACCTCTATATCCTTA 1017 Query 456 ACAGCTGGATGCGATTTGTTTAT-CAGATACGTTACGAGAACGTCTGCTTTGGAATATGA 514 ||||||||||| ||| | || || | | ||||| || |||| ||||||||||||| ||| Sbjct 1018 ACAGCTGGATGTGATCTATTCATGC-GCTACGTGACTCGAACATCTGCTTTGGAATTTGA 1076 Query 515 AGATTTCAATTCAGCTAAGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATC 574 || ||||| || || || || ||| | |||||||||||||||||||||||||||||||| Sbjct 1077 GGACTTCAACTCTGCAAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATC 1136 Query 575 TTGCAAGGCTCGTAGGATTATCGCAATGCTTAGTCAAGATTTTATATTCGATGGTTGTAC 634 ||||||||| || | ||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct 1137 TTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTAC 1196 Query 635 CATAT-TGGTTCATGGACTCTCTAGAGTTGT-TCTGGAAATACTTAAGAC-TGCTGCACA 691 || | |||| ||||| |||| |||||||| | || ||||||| ||||| | | || || Sbjct 1197 TAT-TCTGGTCCATGGTTTCTCCAGAGTTGTGTTTG-AAATACTAAAGACAT-CAGCGCA 1253 Query 692 AAACAACAAGCTCTTTCGAGTTCTCTGCACAGAGGGGAGGCCGGATGGAACAGGAGTTCT 751 |||||| || |||||||||||| | ||||||||||| ||||| ||| |||||| || || Sbjct 1254 AAACAAGAAACTCTTTCGAGTTTTGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACT 1313 Query 752 GTTATCGAGTGAGCTATCGAAGCTCGATATCCCAGTGAAACTACTGCTTGATTCAGCTGT 811 | || | || ||||| | || || ||||| || ||||| || ||| | |||||||| || Sbjct 1314 GCTAGCCAGCGAGCTCGCAAAACTGGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGT 1373 Query 812 GGCGTATAGTATGGACGAGGTAGACATGGTGTTTGTCGGGGCGGATGGAGTTGTAGAAAG 871 || ||||| ||||| || ||||||||||| ||||| || || || ||||| || ||||| Sbjct 1374 AGCCTATAGCATGGATGAAGTAGACATGGTATTTGTTGGAGCTGACGGAGTGGTTGAAAG 1433 Query 872 TGGCGGTATTATCAACATGATGGGAACATACCAAATCGCACTTGTGGCACACAGCATGAA 931 |||||| || || |||||||||||||| ||||||||||| || || ||||| || ||||| Sbjct 1434 TGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTCGTCGCACATAGTATGAA 1493 Query 932 CAAACCGGTCTATGTTGCTGCTGAGAGTTACAAGTTCGCTA-GGCTTTACCCATTAGACC 990 ||||| |||||||| ||||| |||||||||||||| || | |||| |||||||| || | Sbjct 1494 TAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGC-ACGGCTCTACCCATTGGATC 1552 Query 991 AAAAGGACATGGCACCGGCGTTGAGACCAATCGAATTTGG-TGTAAA-GATTCCGACAAA 1048 |||||||| | | |||||| ||| |||| || || ||| ||| | |||| | || Sbjct 1553 AAAAGGACTTAGAACCGGCCTTGCGACCTATTGA-TTTCAATGTTCCTG-TTCCTCCTAA 1610 Query 1049 GGTGGAAGTAGAGAGGTCAGCTCGAGACTATACTCCGCCTCAGTACCTAACACTCCTCTT 1108 ||| || ||||| || || || | ||||| ||||| ||||||||| | || || ||||| Sbjct 1611 GGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTGCTCTT 1670 Query 1109 CACTGACCTTGGTGTTCTCTCTCCCTCTGTAGTTAGCGATGAGCTTATTCA 1159 |||||| ||||||| |||| |||| |||||||| || |||||||||||||| Sbjct 1671 CACTGATCTTGGTGCTCTCACTCCATCTGTAGTAAGTGATGAGCTTATTCA 1721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48682965009 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5