BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72416.3 Length=1057 Score E Sequences producing significant alignments: (Bits) Value Ahg476373 jgi|Araly1|476373|fgenesh2_kg.2__1503__AT1G72416.1 839 0.0 > Ahg476373 jgi|Araly1|476373|fgenesh2_kg.2__1503__AT1G72416.1 Length=718 Score = 839 bits (454), Expect = 0.0 Identities = 624/699 (89%), Gaps = 39/699 (6%) Strand=Plus/Plus Query 1 GCACGATACCCAAAATATCAAActcttcttcttttcccttctcttctcttcttctcttct 60 ||||||||||||||||||||||||||||||| ||| | | | || ||||||||||| Sbjct 1 GCACGATACCCAAAATATCAAACTCTTCTTC-TTT---AAC-C-T-TC-TCTTCTCTTCT 52 Query 61 tcCACGTTTACGCGTATACACATC-TCTATACATACATTAATCTTGATCCTTCTTTATCT 119 ||||||||||||||||| |||| | ||||||||| ||||||||| |||| |||||||||| Sbjct 53 TCCACGTTTACGCGTATCCACA-CATCTATACATTCATTAATCTCGATCTTTCTTTATCT 111 Query 120 CTTTGCTTCCAATAAACTCCAAAGAACAGCTCTTTCTTTTTCTCATTCTTA-CTATCATC 178 ||||||||| |||||||||||| ||| |||||| |||||||||||||||| ||||||| Sbjct 112 CTTTGCTTCTAATAAACTCCAACGAAGTGCTCTTGCTTTTTCTCATTCTTATATATCATC 171 Query 179 ATTAATGGAG-AGAGAAGACTTGTACGCTGTCT-TGGATTTGAACAACGAATGTACACAA 236 || ||||||| || ||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 172 ATCAATGGAGAAG-GAAGACTTGTACGCTGT-TATGGATTTGAACAATGAATGTACACAA 229 Query 237 GGAGATCTCAGACTTTCTTACAAGAACCTTGTTCTGAAATGGCATCCAGATCGGTTTCTT 296 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 230 AGAGATCTCAAACTTTCTTACAAGAACCTTGCTCTGAAATGGCATCCAGATCGGTTTCTT 289 Query 297 GAAGAAATAGAGAAAGATGAAGCTAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 356 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 290 GAAGATATTGAGAAAGATGAAGCCAAGATGAAATTTCAGTCCATTCAACGAGCCTATTCT 349 Query 357 GTTTTGTCGGATTCCAACAAGAGGCTTTTGTATGACGTCGGTGCTTATGATAGTGATGAC 416 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 350 GTTTTGTCGGATTCCAACAAGAGGCTGTTGTATGACGTCGGTGCTTATGACAGTGATGAC 409 Query 417 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTTATGGCTCAAACTCAA 476 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 410 GACGAAACTGGAATGGCTGATTTCATAAATGAGATGGTGACGCTGATGGCTCAAACTCAA 469 Query 477 TCTACGGGGGACGAAAGTTTAGAGGAATTTGAAGAGTTATTTCAAGAATTGTTGAAGGAT 536 |||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||| Sbjct 470 TCTACGGGTGACGAAAGTTTAGAGGAATTTGAAGAGTTGTTTGAAGAATTATTGAAGGAT 529 Query 537 GATGTGAATCAATTCAAAACTCGTTCATCTTCGTCTTCATGTTCGCAATTTAGTGGCACG 596 |||||||||||||||||||||||||| | |||| | | ||| ||| | | |||| Sbjct 530 GATGTGAATCAATTCAAAACTCGTTCGTATTCG-C--CG-GTT---AAT---G-G-CACG 577 Query 597 TCGACTTTGGTCCATTGCGATGATTTATCAAATTCAAATGATATTCCCAACAAAATTAAC 656 ||| | | | || ||||||||||||||||| |||||||| || ||||||||| Sbjct 578 TCGG-T--G--C-ATCGCGATGATTTATCAAAT------GATATTCCGAATAAAATTAAC 625 Query 657 GGTCATGACAACTATTGTTGTATAAGTTCTAGTAAGGTA 695 | ||||||||||| ||||||||||||||||||||||||| Sbjct 626 GCTCATGACAACTGTTGTTGTATAAGTTCTAGTAAGGTA 664 Score = 106 bits (57), Expect = 4e-22 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 862 AAGGTAGGTGGTCCATCGACGAGATTCCAAGCTGGCAATAGAAGATCTAAGAAGTAGAGC 921 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 659 AAGGTAGGTGGTCCATCGACGAGATTCCAAGTTGGCAATAGAAGATCTAAGAAGTAGAGC 718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39342850344 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5