BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72510.1 Length=1381 Score E Sequences producing significant alignments: (Bits) Value Ahg476384 jgi|Araly1|476384|fgenesh2_kg.2__1514__AT1G72510.1 1341 0.0 > Ahg476384 jgi|Araly1|476384|fgenesh2_kg.2__1514__AT1G72510.1 Length=1252 Score = 1341 bits (726), Expect = 0.0 Identities = 1143/1323 (86%), Gaps = 114/1323 (9%) Strand=Plus/Plus Query 63 GAAACGAGAGATTCGAGTGATGTTTTATGAACTACTACTAG-TGtttttttCCGTGAAGT 121 ||||||||||||||||||||| ||||||||||||||| | | | |||||||||||||||| Sbjct 26 GAAACGAGAGATTCGAGTGAT-TTTTATGAACTACTAGT-GTTTTTTTTTTCCGTGAAGT 83 Query 122 -AAAGAGAAACGGTAACTTTTTCTATTTGTTTTCAAGAAAAGCCAAAGaaaaaaaGaatt 180 ||||||||| |||||| ||||| ||||| |||||||||||||||||| | || Sbjct 84 AAAAGAGAAAGGGTAAC-TTTTCAATTTGATTTCAAGAAAAGCCAAAG------A-AA-- 133 Query 181 tttaatatactctgttttttgcaatgattttgttttgtgaaatttttCTCGGAGAAGAAA 240 || | | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 134 ---AA-A-A-------TTTTGCAATGGTTTTGTTTTGTGAAATTTTTCTCGGAGAAGAAA 181 Query 241 GTAATTTAGAAGACGGAGAGTGGCAAAACGA-A-ATATaaaaaaa-aaa--GTTTTC-AA 294 ||||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||| || Sbjct 182 GTAATTTAGAAGACGGAGAGTGGCAAAACGATAGATAAAAAAAAACAAATAGTATTCCAA 241 Query 295 TTTCTTTTAAGaaaaaaaaaGCTTTTTCC-CTTCTTA-AAACCCTTCCTCTGTTTCAGAA 352 ||||||||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| Sbjct 242 TTTCTTTTAAGAAAAAAAAAGTTTTTTTCTCTTTTTAGAAACCCTTCCTCTGTTTCAGAA 301 Query 353 ACAGAGACATAAGAAGAAAATAGATCACAAGCTAATTGCGttctcttctc-ttcttcttc 411 ||||||||| || ||||| ||||||||||||||||||||||||||||||| |||| || Sbjct 302 ACAGAGACAAAACAAGAAGATAGATCACAAGCTAATTGCGTTCTCTTCTCCTTCTACTGG 361 Query 412 tACTGGGTTTTAAAATCAAGAAACCATGTCTGCGAGTGTTCTAAGTGATCCAACAATGCT 471 || | ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 362 TAAT---TTTTAAA-TCAAGAAACCATGTCTGCGAGTGTACTAAGTGATCCAACAATGCT 417 Query 472 AATTTCAACACCGGAGGTAATACTCGTCTCTCCGGTATCGGTTACTCAAATCTCCGGAGA 531 |||||||||||| ||||||||| ||||||||||| ||| || || |||||||| || Sbjct 418 AATTTCAACACCAGAGGTAATAATCGTCTCTCCGACGCCGGCAACACAGATCTCCGGCGA 477 Query 532 TGAGCCAGATTCGGTGACGTGTGATTGTTGCGGATTAACCGAGGAGTGTACCCAATCGTA 591 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 478 TGAGCCAGATTCGGTGACGTGTGACTGTTGCGGATTAACCGAGGAGTGTACACAATCGTA 537 Query 592 CATAGAGATGGTCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 651 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 CATAGAGATGATCAGAGAGCGTTACATGGGGAAATGGATCTGTGGACTTTGTTCTGAAGC 597 Query 652 TGTGAAGTATGAAGTCATGAGAACGAAAAGATTGTTAACGACAGAGGAAGCTATGGCCAG 711 |||||||||||||||||| ||||| ||| ||||| |||| ||||||||||| ||||| || Sbjct 598 TGTGAAGTATGAAGTCATAAGAACTAAACGATTGCTAACTACAGAGGAAGCCATGGCAAG 657 Query 712 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCACCACCGAATCCGACAGGACA 771 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 658 ACACATGAACATGTGTAATAAGTTCAAATCCTCAAGCCCTCCACCGAATCCGACCGGACA 717 Query 772 TTTGATCTCTGCCATGAGACAGATCTTGAGAAAAAGCTTAGATTCACCAAGAATGCTTAG 831 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 718 TTTGATCTCTGCGATGAGACAGATCTTGAGAAGAAGCTTAGATTCACCAAGAATGCTTAG 777 Query 832 ATCTATGCCTAATAGTCCATCTAAAGACGACCAAGATCATCATCATGATTGTGTTTCTAA 891 |||||||||||||||||| |||||||||||||||||| | | | || || |||| Sbjct 778 ATCTATGCCTAATAGTCCTTCTAAAGACGACCAAGAT--T------G-T-GT-TT-CTAA 825 Query 892 TGTTTTGTCTAGGTCTGATAGCTGTTTCGCTAGTTTGACTTGAAAAAAGCTCATCGTTGA 951 ||||||||||||||| ||||||||||||||||||||||||| |||| |||||| | Sbjct 826 TGTTTTGTCTAGGTCCGATAGCTGTTTCGCTAGTTTGACTT-AAAA--GCTCAT-----A 877 Query 952 AAAAATTGTTTTAAACCGTCGGTTTAGGGACCCACTTGGATCAAATCCGGTTTTCTGATT 1011 || ||||||||||||| |||||| ||||| ||||||||||||| |||| Sbjct 878 AA-------------CCGTCGGTTTAGG-ACCCACCTGGATTAAATCCGGTTTTCAGATT 923 Query 1012 TGAAATTTTCGTCGGTAAATCAAAAATTGGTTTCTGTATGTGTTTTTGCCGGATTTGTTG 1071 ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 924 TGAAAATTTCGTCGGTAAACCAAAAATTGGTCTCTGTATGTGTTTTTGCCGGATTTGT-- 981 Query 1072 TTGTACTTTTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTGTCTTTTA 1131 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 982 ----ACTTGTGGAAAATTTTGGGCTAAAAGAATAATTTGGTGCTCTGTTTCTTTCTTTTA 1037 Query 1132 TTCTTTCTCCAATTGCTAGCTAA-TAT-TC-GGAATTCTG--TTGCTGTGAGCTTAGTTA 1186 |||||||||||||||||| ||| | | | || ||| | ||| |||| |||||||| Sbjct 1038 TTCTTTCTCCAATTGCTAA-TAACTTTATAAGGG-TTCGGAATTG-TGTG--CTTAGTTA 1092 Query 1187 AACAAGAACAAAATGAAATGAAAATATGTTTATACTATTCGATTATAATTAGATAATTAA 1246 |||||||||||||| | | | | |||||||||||||| ||||| Sbjct 1093 AACAAGAACAAAAT-A--T-----T---------C-----GATTATAATTAGATGATTAA 1130 Query 1247 GAAGG-AGATTCTTTAGAAATTTATCATATT-GAAAAGACATGTATGATCAAAAACCATG 1304 |||| |||||||||||| ||||||||| || |||||||||||||||| |||||||||| Sbjct 1131 AAAGGGAGATTCTTTAGAGATTTATCAT-TTAGAAAAGACATGTATGAACAAAAACCATC 1189 Query 1305 GAAGGTAGGGTCATGCTTATCTCTGTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1364 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1190 GAAGGTAGGGCCATGCTTATCTCTCTGATGATTCTCTATCACAAAATAGAAATGAAAAAG 1249 Query 1365 GTG 1367 ||| Sbjct 1250 GTG 1252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51694675452 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5