BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72520.1 Length=3042 Score E Sequences producing significant alignments: (Bits) Value Ahg476385 jgi|Araly1|476385|fgenesh2_kg.2__1515__AT1G72520.1 4390 0.0 Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1 2060 0.0 > Ahg476385 jgi|Araly1|476385|fgenesh2_kg.2__1515__AT1G72520.1 Length=2896 Score = 4390 bits (2377), Expect = 0.0 Identities = 2725/2890 (94%), Gaps = 36/2890 (1%) Strand=Plus/Plus Query 94 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTAATCTTCGAGAGATCATCATCA 153 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 5 AAAATGGCTTTAGCTAATGAGATAATGGGTTCTCGTCTGATCTTTGAGAGATCATCATCA 64 Query 154 CTTGCGTCTCCGTTTCATTCGCGTTTCTCCATCAAGAAGAAGACACAGAGAACACAGTTC 213 ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||| Sbjct 65 CTTGCGTCTCCGTTTCAATCGCGTTTCTCCACCAAGAAGAGGACACAGAGAACGCAGTTC 124 Query 214 TCCATCAACCCTTTTGATCCGAGACCTATGAGAGCCGTTAACTCAAGCGGCGTTGTAGCG 273 |||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| Sbjct 125 TCCATCAACCCTTTTGATCCGAAACCTATAAGAGCTGTTAACTCCAGCGGCGTTGTAGCA 184 Query 274 GCCATCAGCGAGGATTTGGTTAAAACGCTGCGTATTAGCACTGTCGGTAGAAAACAAGAG 333 ||||||||| || || ||||||||||||||||||| ||||||||||||| Sbjct 185 GCCATCAGC---GA---GG---AAACGCTGCGTATTAGCACCGTCGGTAGAAAAC----- 230 Query 334 AAGGAGGAAGAAGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGG 393 |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 231 -AGGAGGAAGAGGAGGAGAAGTCGGTGAAGTTTAAGGTGAGAGCGGTTGCGACGGTGAGG 289 Query 394 AACAAAAACAAAGAGGATTTTAAAGAAACTTTGGTTAAGCATTTGGATGCTTTTACTGAT 453 ||||| ||||| || ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 290 AACAAGAACAAGGAAGATTTTAAAGATACTCTGGTTAAGCATTTGGATGCTTTTACTGAT 349 Query 454 AAAATTGGTAGAAACGTTGTCTTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAAT 513 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 350 AAAATCGGTAGAAACGTCGTCTTGGAGCTTATTAGTACCCAAGTTGATCCAAAAACGAAT 409 Query 514 GAGCCAAAGAAGAGTAAAGCGGCAGTTTTGAAAGATTGGTCAAAGAAATC-AAATTCAAA 572 ||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | ||| Sbjct 410 GAGCCAAAGAAGAGTAAAGCGGCGGTATTGAAAGACTGGTCAAAGAAATCGAAAAT-AAA 468 Query 573 GGCGGAAAGAGTCCATTACACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGG 632 |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 469 GGCGGAGAGAGTTCATTACACGGCGGAGTTCACGGTGGATTCCGCCTTTGGTTCGCCGGG 528 Query 633 AGCCATCACCGTGACCAACAAACACCAAAAAGAGTTCTTTCTTGAGAGCATCACCATCGA 692 ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 529 AGCCATCACGGTAACCAACAAACACCAAAAAGAGTTCTTCCTTGAGAGCATCACCATTGA 588 Query 693 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGA 752 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 589 GGGTTTCGCATGTGGCCCTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCCCAAAAAGA 648 Query 753 CCATCCATCCAAACGAATTCTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 812 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 649 CCATCCATCCAAACGAATTTTCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACCGTC 708 Query 813 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGA 872 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 709 CGGTCTAAGAACATTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGGAAAGGAGA 768 Query 873 AAGAAAATTATCAGACAGAATCTACGATTATGATGTGTACAACGACATAGGAAATCCGGA 932 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 769 AAGAAAATTATCAGACAGAATCTACGATTTTGATGTCTACAACGACATAGGAAATCCGGA 828 Query 933 CATATCACGTG-AACTAGCCCGTCCCACACTTGGTGG-CCGTGAATTTCCTTACCCTAGA 990 ||||||||| | ||||||||||||||||| ||||||| || | ||||||||||||||||| Sbjct 829 CATATCACG-GAAACTAGCCCGTCCCACATTTGGTGGTCC-TAAATTTCCTTACCCTAGA 886 Query 991 CGCTGTCGAACCGGCCGGTCTTCAACCGACACCGATATGATGTCTGAGAGGCGGGTGGAG 1050 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 887 CGCTGTCGAACCGGCCGGTCTTCCACAGACACCGATATGATGTCTGAGAGGCGGGTGGAG 946 Query 1051 AAACCATTACCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1110 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 947 AAACCATTACCGATGTATGTGCCAAAAGATGAGCAGTTCGAGGAGTCTAAGCAGAACACT 1006 Query 1111 TTTGCTGCATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1170 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 TTTGCTGCATGTAGGCTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGC 1066 Query 1171 ATTTTGGCTGAGGACTTCGCTAACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTG 1230 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1067 ATTTTGGCTGAGGACTTCGCTAACTTCGGCGAGATCGATAGTCTTTACAAAGAAGGCTTG 1126 Query 1231 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC 1290 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 1127 CTTCTCAAGTTAGGGTTTCAAGATGATATGTTCAAGAAGTTCCCTTTGCCTAAGATCGTC 1186 Query 1291 ACTACCCTCCAAAAATCAAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTTTCA 1350 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1187 ACTACCCTCCAAAAATCAAGCGAAGGCTTGCTTAGATACGACACTCCAAAAATAGTTTCA 1246 Query 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1247 AAGGATAAATACGCATGGCTTAGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1306 Query 1411 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGAA 1470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1307 AACCCGGTCAACATAGAACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCCGAG 1366 Query 1471 ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTGAT 1530 |||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 1367 ATCTACGGTCCAGGTCTTCACTCCGCTCTCACAGAAGACCACATCATCGGTTACCTTGAC 1426 Query 1531 GGCTTAACCGTACAACAAGCGTTAGAGACGAACCGTTTGTTTATGGTGGACTACCATGAC 1590 |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1427 GGCTTATCCGTACAACAAGCGTTAGAGACAAACCGATTGTTTATGGTGGACTACCATGAC 1486 Query 1591 ATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCGACT 1650 ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| Sbjct 1487 ATATACTTACCGTTTCTAGATCGAATCAACGCGCTAGATGGACGCAAAGCTTACGCGACT 1546 Query 1651 CGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTAAGC 1710 ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 1547 CGAACCATATTGTTCTTGACCCGTCTAGGTACACTCAAGCCTATAGCGATCGAGCTAAGC 1606 Query 1711 CTCCCTTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1770 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1607 CTCCCGTCTCAATCAAGCTCAAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGTAGAC 1666 Query 1771 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGCTGGT 1830 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1667 GCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGATCTAATGACGCTGGT 1726 Query 1831 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTATATTA 1890 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct 1727 GTCCACCAGCTTGTGAATCATTGGTTACGTACTCACGCGTGTTTAGAGCCGTTTATATTA 1786 Query 1891 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1787 GCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCACATG 1846 Query 1951 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGTGCGGACGGTGTG 2010 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1847 AGGTACACTTTGGAGATCAATGCCGTGGCACGACAGACTTTGATTAGCGCGGACGGTGTG 1906 Query 2011 ATCGAGTCGTGCTTCACTGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 2070 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1907 ATCGAGTCGTGCTTCACAGCTGGTCAATACGGTCTAGAGATTAGTTCCGCTGCGTATAAG 1966 Query 2071 AACAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAGGGGGATGGCT 2130 |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1967 AACAAATGGCGGTTCGATATGGAAGGCCTCCCTGCTGATCTCATCCGAAGGGGAATGGCT 2026 Query 2131 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTACCCATACGCC 2190 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2027 GTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTCGAAGACTACCCATACGCC 2086 Query 2191 AACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTACGTGGAACGT 2250 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2087 AACGACGGTCTCTTATTATGGTCCGCGATCCAAACCTGGGTCCGAACCTACGTGGAACGT 2146 Query 2251 TATTACGCAAACTCGAACCTAATCCAAACCGATA-CTGAGCTCCAAGCCTGGTACTCTGA 2309 |||||| || || |||| |||||||||||||| | | || ||||||||||||||||| || Sbjct 2147 TATTACCCAGACCCGAATCTAATCCAAACCGACATC-GAACTCCAAGCCTGGTACTCCGA 2205 Query 2310 GTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGAAGCTTTCCAC 2369 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 2206 GTCAATCAACGTAGGTCACGCCGATCACCGCGACGCCGAGTGGTGGCCGGAGCTTTCCAC 2265 Query 2370 CGTCGAAGATCTCGTCTCCGTCATCACCACCATCATCTGGCTCGCCTCGGCACAACACGC 2429 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 2266 CGTCGAAGATCTCGTCTCTGTCATCACCACCATCATCTGGCTCGCCTCCGCACAACACGC 2325 Query 2430 GGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACCGACCACCGCTAAT 2489 ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||| | || Sbjct 2326 TGCACTCAACTTCGGACAATATCCTTACGGCGGCTATGTCCCAAACCGGCCACCGTTGAT 2385 Query 2490 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCACGAGTTTTATCGAAGATCCTCA 2549 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2386 GCGGCGGTTGATTCCCGACGAGTCAGATCCCGAGTTCGCGAGTTTTATCGAAGATCCTCA 2445 Query 2550 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGAAGTTTATGGCGGTGGT 2609 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2446 AAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAGACGACGAAGTTTATGGCAGTGGT 2505 Query 2610 TGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2669 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2506 TGATACATTGTCAACACATTCACCGGATGAGGAGTATATCGGAGAGAGACAACAACCGTC 2565 Query 2670 GATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGATTCTCGGCGGAAATCGG 2729 ||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 2566 GATATGGACCGGAGATGCTGAGATTGTTGATGCGTTTTATGGATTTTCGGCGGAAATCGG 2625 Query 2730 ACGGATAGAGAAGGAGATTGACAAGAGGAATCGTGATCCTAGCCGTAGGAATCGCTGTGG 2789 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 2626 ACGGATAGAGAAGGAGATTGAGAAGAGGAATCGTGATCCTAGCCGTAGGAATCGGTGTGG 2685 Query 2790 CGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTGAACCGGGTGTTACGTGTAG 2849 ||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| Sbjct 2686 CGCCGGAGTTTTACCGTACGAGTTGATGGCTCCAAGTTCTGAACCCGGTGTTACGTGTAG 2745 Query 2850 AGGAGTGCCTAATAGTGTATCTATTTAGAATTATTCAATTTTTCAAAGTATAGAGAATTT 2909 ||| ||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| Sbjct 2746 AGGCGTGCCTAATAGTGTATCCATTTAGAATTATTAAATTTG--A--GTATAGAGAATTT 2801 Query 2910 TATAAGTATATAATTAGATTTT-GACGCAG-TAT---G----GTTTATTTGCCGATATTG 2960 |||||||| |||| |||||||| | |||| ||| | |||||||||||||| ||| Sbjct 2802 TATAAGTAAATAAATAGATTTTTGTCGCAAATATTTTGTATAGTTTATTTGCCGATGTTG 2861 Query 2961 TAAAATTCTT 2970 |||||||||| Sbjct 2862 TAAAATTCTT 2871 > Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1 Length=2898 Score = 2060 bits (1115), Expect = 0.0 Identities = 2220/2743 (81%), Gaps = 117/2743 (4%) Strand=Plus/Plus Query 185 TCAAGAAGAAGACACAGAGAACACAGTTCTCCATCAACCCTTTTGATCCG-AGACCTATG 243 ||||||||| |||||||| ||| || ||||| |||||||||||||| ||| ||||| | | Sbjct 176 TCAAGAAGAGGACACAGACAACGCAATTCTCGATCAACCCTTTTGA-CCGCAGACC-AAG 233 Query 244 -AGAGCCGTTAACTCAAGCGGCGTTGTAGCGGCCATCAGCGAGGATTTGGTTAAAACGCT 302 | | || || || |||||| || |||||||||||||| |||||||| |||||||| Sbjct 234 AAAAACC---AAATC---CGGCGTCGTTGCGGCCATCAGCGAAGATTTGGTCAAAACGCT 287 Query 303 GCG-TATT--AGC-ACTGTCGGTAGA-A-AACA-AGAGAAGGAGGAAGAAGAGGAGAAGT 355 ||| | || | | || ||| ||| | || | || ||| ||||||| ||| || | Sbjct 288 GCGTTTTTCCA-CAACAACCGG-AGACAGAA-AGAGCGAA-GAGGAAG-AGA-AAG-CGG 340 Query 356 CGGTGAAGTTTAAGGTGAGAGCAGTTGCGACGGTGAGGAACAAAAACAAAGAGGATTTTA 415 ||||||| || ||||||||||| || | || ||||||||||| ||||| |||||||| | Sbjct 341 CGGTGAAATTCAAGGTGAGAGCTGTGGTTACTGTGAGGAACAAGAACAAGGAGGATTTAA 400 Query 416 AAGAAACT-TTGGTTAAGCATTTGGATGCTTTTACTGATAAAATTGGTAGAAACGTTGTC 474 |||| ||| || ||||||||||||||||||||| |||||||||||||| | ||| | ||| Sbjct 401 AAGAGACTCTT-GTTAAGCATTTGGATGCTTTTGCTGATAAAATTGGTCGTAACATCGTC 459 Query 475 TTGGAGCTTATGAGTACCCAAGTTGATCCAAAAACGAATG-AGCCAAAGAAGAGTAAAGC 533 ||||||||||| || |||||| |||||||||||||| | | ||||||||||||||| || Sbjct 460 TTGGAGCTTATTAGCACCCAACTTGATCCAAAAACG-AGGTTGCCAAAGAAGAGTAATGC 518 Query 534 GGCAGTTTTGAAA-GATTGGTCAAAGAAATC-AAATTCAAAGGCGGAAAGAGTCCATTAC 591 || ||||| ||| ||||||||||||||||| ||| | |||||||| ||||| || ||| Sbjct 519 AGCGGTTTT-AAAGGATTGGTCAAAGAAATCGAAA-ACGAAGGCGGATAGAGTTCACTAC 576 Query 592 ACGGCCGAGTTCACGGTGGATTCAGCCTTTGGTTCTCCGGGAGCCATCACCGTGACCAAC 651 ||||| |||||||||||||| |||| ||||| || ||||||||||||||||| | || Sbjct 577 ACGGCGGAGTTCACGGTGGACGCAGCGTTTGGCTCGCCGGGAGCCATCACCGTTATGAAT 636 Query 652 AAACACCAAAAAGAGTTCTTTCTT-GAGAGCATCACCATCGAGGGTTTCGCA-TGTGGCC 709 |||||||| |||||||| |||||| |||||||| |||||||| || |||||| | ||| | Sbjct 637 AAACACCAGAAAGAGTT-TTTCTTGGAGAGCATAACCATCGAAGGCTTCGCACT-TGGTC 694 Query 710 CTGTTCACTTCCCCTGCAACTCTTGGGTCCAATCTCAAAAAGACCATCCAT-CCAAACGA 768 |||||||||| || ||||| |||||||| || || |||||||| || || | |||||| Sbjct 695 CTGTTCACTTTCCATGCAATTCTTGGGTTCAGTCCCAAAAAGATCA-CCCTGAAAAACGA 753 Query 769 ATTC-TCTTCACTAATCAGCCTTACTTGCCGAGCGAGACACC-GTCCGG-TCTAAGAACA 825 | || |||||||||||||||| || ||||||| |||||||| | ||| | ||||| | Sbjct 754 A-TCTTCTTCACTAATCAGCCGTATTTGCCGAATGAGACACCAG-GCGGAT-TAAGAGTA 810 Query 826 TTAAGGGAGAAAGAATTGGAGAATCTAAGAGGAAATGGTAAAGGAGAAAGAAAATTATCA 885 || ||||| ||||| ||| |||||||| ||||| |||| | |||| ||||||||||||| Sbjct 811 TTGAGGGAAAAAGAGTTGAAGAATCTACGAGGAGATGGGAGTGGAGTAAGAAAATTATCA 870 Query 886 GACAGAATCTACGA-TTATGATGTGTACAACGACATAGGAAATCCGGACATA-TC-ACGT 942 |||||||| ||||| || |||||| ||||||||| | |||||||| |||| | || | | Sbjct 871 GACAGAATTTACGACTT-TGATGTTTACAACGACCTTGGAAATCCCGACA-AGTCTTC-T 927 Query 943 GAACTAGCCCGTCCCACACTTGGTGGCCGTGA-ATTTCCTTACCCTAGACGCTGTCGAAC 1001 ||||| | || |||| |||||| |||| || | |||||||||||||||| ||||| || Sbjct 928 GAACTCTCTCGCCCCAAACTTGGCGGCCAAGAGA-TTCCTTACCCTAGACGTTGTCGTAC 986 Query 1002 CGGCCGGTC-TTCAACCGACACCGAT-ATGATGTCTGAGAGGCGGGTGGAGAAACCATTA 1059 || | | | |||| | | ||| | || | | ||||| || || ||||| ||| || Sbjct 987 TGGTC-GCCAAACAACAGTTTCTGATAAAGAAG-CGGAGAGCCGAGTAGAGAAGCCACTA 1044 Query 1060 CCGATGTATGTGCCAAGAGATGAGCAGTTCGAGGAGTCTAAGC-AGAACACTTTTGCTGC 1118 |||||||| |||||| |||| ||||| ||||| |||||||| | || ||||||| ||||| Sbjct 1045 CCGATGTACGTGCCACGAGACGAGCAATTCGAAGAGTCTAAACAAG-ACACTTTCGCTGC 1103 Query 1119 ATGTAGACTTAAGGCGGTTTTACATAACCTTATACCTTCACTAAAAGCTAGCATTTTGGC 1178 | | ||||| || ||||| || || |||| || || || || |||||||| ||| | || Sbjct 1104 AGGGAGACTAAAAGCGGTCTTGCACCACCTAATTCCGTCGCTCAAAGCTAGTATTGTAGC 1163 Query 1179 TGAGGACTTCGCTA-ACTTTGGTGAGATCGATAGTCTTTACAAAGAAGGCTTGCTT-CTC 1236 ||||||||| || | |||| || || ||||||||||| || |||||||||||| || ||| Sbjct 1164 TGAGGACTTTGC-AGACTTCGGCGAAATCGATAGTCTCTATAAAGAAGGCTTG-TTACTC 1221 Query 1237 AAGTTAGGGTTTCAAGATGATATGTTCAAGAAATTCCCTTTACCGAAGATCGTC----AC 1292 |||||||||||||||||||| || || ||||| |||||||| || ||| ||||| | Sbjct 1222 AAGTTAGGGTTTCAAGATGACATCTTTAAGAAGTTCCCTTTGCCTAAGGTCGTCGTTGA- 1280 Query 1293 TACCCTCCAAAAATC-AAGCGAGGGCTTGCTTAGATACGACACTCCTAAAATAGTT-TCA 1350 |||||||||| |||| | ||| | | || | ||||||||| || |||||| || || Sbjct 1281 TACCCTCCAAGAATCTACTAAAGGAC-TCCTCAAATACGACACCCCAAAAATA-TTATCG 1338 Query 1351 AAGGATAAATATGCATGGCTTCGAGATGACGAGTTCGCACGCCAAGCCATAGCTGGGATC 1410 ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||| Sbjct 1339 AAGGATAAAAATGCATGGCTAAGAGATGACGAGTTCGCACGTCAAGCCATAGCTGGAATC 1398 Query 1411 AACCCGGTCAACATAGA-ACGAGTCACGTCTTATCCACCGGTCAGCAATCTTGACCCTGA 1469 || || || ||||| || | |||||| | |||||||||||||||||||||||||||| | Sbjct 1399 AATCCAGTGAACATTGAGA-GAGTCAAGACTTATCCACCGGTCAGCAATCTTGACCCC-A 1456 Query 1470 A-ATCTACGGACCAGGTCTTCACTCCGCTCTCACGGAAGACCACATCATCGGTCAACTTG 1528 | |||||||| ||| | ||||| |||||||| | ||||| ||||| ||||| || | Sbjct 1457 AGATCTACGGTCCA---CAACACTCAGCTCTCACTCACGACCATATCATTGGTCACCTCG 1513 Query 1529 ATGGCTTAACCGTACAACAAGCGTTAGA-GACGAACCGTTTGTTTATGGTGGACTACCAT 1587 | || || |||||||||||||||| || || ||| | |||| |||| |||| |||||| Sbjct 1514 ACGGATTCTCCGTACAACAAGCGTTGGAAGA-GAATAGATTGTATATGTTGGATTACCAT 1572 Query 1588 GACATATACTTACCGTTTCTAGATAGAATCAACGCGCTTGATGGACGCAAGGCTTACGCG 1647 ||||||| ||||||||| ||||| | ||||| ||| | ||||||||||| ||||| || Sbjct 1573 GACATATTCTTACCGTTCCTAGACCGGATCAATGCGGTAGATGGACGCAAAGCTTATGCT 1632 Query 1648 ACTCGAACCATATTGTTCTTGACCCGACTCGGTACACTCAAGCCTATCGCCATCGAGCTA 1707 ||||||||||| || |||||||| || ||||||||||| |||||| | ||||| |||||| Sbjct 1633 ACTCGAACCATTTTCTTCTTGACTCGTCTCGGTACACTGAAGCCTGTAGCCATTGAGCTA 1692 Query 1708 AGCCTCCCTTCTCAATCAAGCTC-AAACCAAAAGTCCAAGCGCGTGGTCACACCTCCAGT 1766 ||||||||| | |||| || | |||| | ||||||||| ||| | ||||||||||| Sbjct 1693 AGCCTCCCTCC-CAATG--GCCCGAAAC-ATCGGTCCAAGCGTGTGCTTACACCTCCAGT 1748 Query 1767 AGACGCAACCTCCAACTGGATGTGGCAGCTAGCCAAGGCCCACGTTGGGTCCAATGACGC 1826 || ||||||||||||||||||||||| || || || ||||||||| | || || || || Sbjct 1749 CGATGCAACCTCCAACTGGATGTGGCAACTCGCTAAAGCCCACGTTAGTTCTAACGATGC 1808 Query 1827 TGGTGTCCACCAGCTTGTGAATCATTGGTTACGTACTCATGCGTGTTTGGAACCGTTTAT 1886 ||||||||| || ||||| ||||| |||||||| |||||||| || ||||| || ||||| Sbjct 1809 TGGTGTCCATCAACTTGTCAATCACTGGTTACGGACTCATGCATGCTTGGAGCCTTTTAT 1868 Query 1887 ATTAGCTGCTCATAGACAATTAAGCGCAATGCATCCGATATTCAAATTATTAGACCCTCA 1946 ||||||||| ||||| || || ||||| ||||||||||||||||| || | || || || Sbjct 1869 ATTAGCTGCGCATAGGCAGTTGAGCGCTATGCATCCGATATTCAAGCTACTGGATCCGCA 1928 Query 1947 CATGAGGTACACTTTGGAGATCAATGCCGTGGC-ACGACAGA-CTTTGATTAGTGCGGAC 2004 |||||||||||| ||||| |||||||| |||| | |||| | | ||||| ||||| || Sbjct 1929 CATGAGGTACACGTTGGAAATCAATGCATTGGCGA-GACA-ATCGTTGATCAGTGCAGAT 1986 Query 2005 GGTGTGATCGA-GTCGTGCTTCACTGCTGGT-CAATACGGTC-TAGAGATTAGTTCCGCT 2061 ||||||||||| | | |||||||||| || || ||||| | | || || || | || Sbjct 1987 GGTGTGATCGAAGGAG-GCTTCACTGCCGGCGCA-TACGG-CATGGAAATGAGCGCTGCC 2043 Query 2062 GCGTATAAGAA-CAAATGGCGGTTTGATATGGAAGGTCTCCCTGCTGATCTCATCCGAAG 2120 || ||||| || || |||||||| || |||||||| ||||| || |||||||| || || Sbjct 2044 GCATATAA-AAGCAGCTGGCGGTTCGACATGGAAGGCCTCCCCGCCGATCTCATTCGCAG 2102 Query 2121 GGGGATGGCTGTTCCAGACCCAACACAACCACATGGGCTTAAATTACTTGTTGAAGACTA 2180 || || || |||| || || ||||||||||||| |||||| | || | |||||||| Sbjct 2103 AGGAATAGCAATTCCTGATGCATCACAACCACATGGTCTTAAACTCCTAATCGAAGACTA 2162 Query 2181 CCCATACGCCAACGACGGTCTCTTATTATGGTCCGCAATCCAAACTTGGGTCCGAACCTA 2240 || ||||||||||||||||| ||| | |||||||| |||||||| |||||||| ||||| Sbjct 2163 TCCGTACGCCAACGACGGTCTTTTACTCTGGTCCGCCATCCAAACCTGGGTCCGCACCTA 2222 Query 2241 CGTGGAACGTTATTACGCAAACTCGAACCTAATCCAAACCGA-TACTGAGCTCCAAGCCT 2299 ||||||||| || ||| ||||| ||| ||||||| |||| || | ||||||||||| || Sbjct 2223 CGTGGAACGCTACTACTCAAACCCGAGCCTAATCAAAACAGACT-CTGAGCTCCAAAACT 2281 Query 2300 GGTACTCTGAGTCAATCAACGTAGGTCACGCTGATCACCGCGACGCCGAGTGGTGGCCGA 2359 ||||||| || ||||||||||| || ||||| || | ||||||||| || ||||||||| Sbjct 2282 GGTACTCCGAATCAATCAACGTCGGCCACGCCGACCTCCGCGACGCTGATTGGTGGCCGG 2341 Query 2360 AGCTT-TCCACCGTCGAAGATCTCGTCTCCG-T-CATCACCACCATCATCTGGCTCGCCT 2416 || || || |||||||| || || || || | | | |||||||| | |||||||| |||| Sbjct 2342 AG-TTATCAACCGTCGACGACCTTGTGTC-GATTC-TCACCACCTTAATCTGGCTAGCCT 2398 Query 2417 CGGCACAACACGCGGCACTCAACTTCGGACAATATCCTTACGGTGGCTACGTCCCGAACC 2476 | ||||||||||| || | |||||||||||||| || ||||| ||||||||||| |||| Sbjct 2399 CAGCACAACACGCCGCTTTAAACTTCGGACAATACCCGTACGGCGGCTACGTCCCAAACC 2458 Query 2477 GACCACCGCTAATGCGGCGGTTGATTCCCG-ACGAGTCAGATCCCGAGT-TCACGAGTTT 2534 |||| ||| | ||||| ||||| || |||| ||||||| ||||| |||| | |||| || Sbjct 2459 GACCTCCGTTGATGCGACGGTTAAT-CCCGGACGAGTCGGATCCAGAGTATG-CGAGCTT 2516 Query 2535 TATCGA-AGATCCTCAAAAGTATTTTTTCTCGTCGATGCCGAGTTTATTGCAAACGACGA 2593 |||| | |||| | ||||||| |||||||||||||||||||| ||| || ||| Sbjct 2517 TATCTCTA-ATCCGGAGAAGTATTACTTCTCGTCGATGCCGAGTTTGGCGCAGACTTCGA 2575 Query 2594 AGTTTATGGCGGTGGTTGATACATTGTCGACACATTCGCCGGATGAGGAGTATATCGGAG 2653 |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || | Sbjct 2576 AGTTTATGGCTGTGGTTGATACTTTGTCGACGCATTCGCCGGATGAGGAGTATATTGGGG 2635 Query 2654 AGAGACAACAACCGTCGATATGGACTGGAGATGCTGAGATCGTAGATGCGTTTTATGGAT 2713 |||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 2636 AGAGACAACAGCCGTCGATTTGGACTGGAGATGCAGAGATCGTTGATGCGTTTTATGGAT 2695 Query 2714 TCT-CGGCGGAAATCGGACGGATAGAGAAGGAGATTGACAAGAGGAATCG-TGATCCT-A 2770 | | || |||| ||||||||||||||||| |||||||| || ||||| || ||||||| | Sbjct 2696 T-TGCGACGGAGATCGGACGGATAGAGAAAGAGATTGAGAAAAGGAA-CGCTGATCCTGA 2753 Query 2771 GCCGTAGGAATCGCTGTGGCGCGGGAGTGTTACCGTATGAGTTGATGGCTCCGAGTTCTG 2830 |||||| ||| | ||||| || || || || || ||||||||| ||| ||||||||||| Sbjct 2754 -CCGTAGAAATAGGTGTGGGGCTGGTGTTTTGCCTTATGAGTTGTTGGTTCCGAGTTCTG 2812 Query 2831 AACCGGGTGTTACGTGTAGAGGAGTGCCTAATAGTGTATCTAT 2873 | || ||||||||||||||||| || ||||||||||||||||| Sbjct 2813 AGCCTGGTGTTACGTGTAGAGGTGTACCTAATAGTGTATCTAT 2855 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114880178920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5