BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72610.1 Length=931 Score E Sequences producing significant alignments: (Bits) Value Ahg476393 jgi|Araly1|476393|fgenesh2_kg.2__1523__AT1G72610.1 1273 0.0 > Ahg476393 jgi|Araly1|476393|fgenesh2_kg.2__1523__AT1G72610.1 Length=872 Score = 1273 bits (689), Expect = 0.0 Identities = 830/894 (93%), Gaps = 25/894 (3%) Strand=Plus/Plus Query 1 ACACAGTTTATCCCACACCTCTCTATATAAACACCCGAGACCGAGAGGAGTGAGAAGAGT 60 ||||||||||||| |||||||||||||||||||| | || || | |||| || ||| Sbjct 1 ACACAGTTTATCCAACACCTCTCTATATAAACACTC--GA--GA-A-GAGT-AG-AGA-- 50 Query 61 AGGGAAAAAGAAAAGAAAAGTAGAGTACTATCTTCCTCTTAAACCAACCATTC-AAAATG 119 | |||||||||||||||| |||| | | | | ||||||||||| ||||| |||||| Sbjct 51 A---AAAAAGAAAAGAAAAGAAGAG-AGT-TAGT--TCTTAAACCAATCATTCAAAAATG 103 Query 120 TTGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 ATGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGAT 163 Query 180 TTCTGTGTCGCAAACCTGAAACGCGCTGAAACCCCTGCGGGTTACCCTTGCATTCGTCCC 239 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 164 TTCTGTGTCGCAAACCTGAAACGCGCTGACACGCCTGCGGGTTACCCTTGCATTCGTCCC 223 Query 240 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCTGGAAACACTACA 299 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 224 ATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCCGGAAACACTACA 283 Query 300 AACATCATCAACGCCGCTGTCACACCCGCTTTCG-CAGCTCAGTTCCCGGGTCTGAACGG 358 |||||||||| |||||||||||| |||||||||| | ||||||||||| ||||||||||| Sbjct 284 AACATCATCAGCGCCGCTGTCACGCCCGCTTTCGTC-GCTCAGTTCCCAGGTCTGAACGG 342 Query 359 TCTAGGCCTCTCTACAGCTAGACTTGACTTAGCTCCTAAAGGTGTGATCCCAATGCACAC 418 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 343 TCTAGGCCTCTCTACAGCTAGACTTGACCTAGCTCCTAAAGGTGTGATCCCAATGCACAC 402 Query 419 TCACCCTGGTGCCTCTGAGGTTCTCTTTGTCCTT-ACTGGCTCCATTACCGCTGGGTTTG 477 |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 403 TCACCCTGGTGCCTCTGAGGTTCTCTATGTCCTTGAC-GGCTCCATTACCGCTGGGTTTG 461 Query 478 TCTCCTCGGCAAACGCTGTCTACGTGCAGACACTCAAACCAGGACAGGTCATGGTTTTCC 537 ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 462 TCTCCTCTGCAAACGCTGTCTACGTGCAGACACTTAAACCAGGACAGGTCATGATTTTCC 521 Query 538 CACAGGGCTTGCTTCATTTCCAGATCAACGCGGGAAAATCCTCTGCTTCAGCCGTTGTCA 597 ||||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||| Sbjct 522 CACAGGGATTGCTGCATTTCCAGATCAATGCAGGAAAATCCTCTGCAGCAGCCATTGTCA 581 Query 598 CTTTCAACAGCGCTAATCCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTC 657 | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || Sbjct 582 CATTCAACAGCGCTAGTCCGGGTCTGCAGATTCTCGATTTCGCACTCTTTGCTAACAATC 641 Query 658 TTCCCACTGAACTCGTCGTGGGTACTACTTTCCTTGACGCCACTACAGTCAAGAAGCTAA 717 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 642 TTCCCACTGAACTCGTTGTGGGTACTACTTTCCTTGACGCTACTACAGTCAAGAAGCTAA 701 Query 718 AGGGTGTTCTTGGAGGAACTGGCTaaaaaaaGACTTAGGACTACTCCTTGACTAAAACAC 777 ||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| Sbjct 702 AGGGTGTTCTTGGAGGAACCGGCTAAAAAAAGACTTAGGACT-C-C-TTGACTAAAACAC 758 Query 778 CAAAACCTGTTTCTTCATCtttttttCTCTTTAATTGATTCTTGTCTTCTCTGTTTTGTG 837 |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| Sbjct 759 CAAAACCTGTTTCTTCTTCTTCTTTTCTCTTTGATTGATTCTTGTCTTCTCTGTTTTGTG 818 Query 838 TGCCTTGTAATTCTTCAAAACCTGTCAAAATTGTTACATTGTATGTGAGTTTTT 891 | || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 819 TCCCGTGTAATTCTTCAAAACCTGTCAAAATGGTTACATTGTATGTGAGTTTTT 872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34539362802 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5