BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G72640.1 Length=1108 Score E Sequences producing significant alignments: (Bits) Value Ahg476397 jgi|Araly1|476397|fgenesh2_kg.2__1527__AT1G72640.1 1640 0.0 > Ahg476397 jgi|Araly1|476397|fgenesh2_kg.2__1527__AT1G72640.1 Length=1053 Score = 1640 bits (888), Expect = 0.0 Identities = 1015/1073 (95%), Gaps = 22/1073 (2%) Strand=Plus/Plus Query 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACTGTGAACTGTTGAGAGATT 60 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct 1 ATCCCGGTTTAGAGAAACCTCTTTCTCATCTAGAGGGTTACAGTGAACTCTTGGGAGA-- 58 Query 61 TACAGTAGAAGCAAGGTGAGGACGAAACCTTATCTTTGTGGTTGCAGACATGGCGGGTAC 120 | | |||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 59 T----T---------GTGAGGACGAAACCTTATCTTTGTAGTTGCAGACATGGTGGGTAC 105 Query 121 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTCTTCTTCGAATCA 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 106 TTCTCTACCTTCGTGTCTCCTCAGTCAAGGACCTTCGTTACTCTTCTGTTCTTCGAATCA 165 Query 181 GGACTCAGAAGCTAATAAATGTCGAATTGGGATAACATCTGGAAAACGTTGTCTTGTTCG 240 || ||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 166 GGTCTCAGAA---ACTAAATGTCGAATTGCGATAACATCTGGAAAACGTTGTCGTGTTCG 222 Query 241 TTGTTTCGCTAAGAAGAAAATCAGTTTTGTGGATCAGATTCTCGATTATATCGAAGGCGG 300 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 223 TTGTTTCGCTAAGAAGAAAATCAGCTTTGTAGATCAGATTCTCGATTATATCGAAGGCGG 282 Query 301 TCCCAAGCTTAGGAAATGGTATGGAGCTCCTGAACTTCGGCCAAAGGATGGATCTTTAAG 360 ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 283 TCCAAAGCTTAGGAAATGGTATGGAGCGCCTGAACTTCGGCCAAAAGATGGATCTTTAAG 342 Query 361 TGGAGACGACGATGAATTTGAAGCAGAGGAA-AAAGAAGATGATCTTGATGGAGAGAAA- 418 ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| Sbjct 343 TGGAGACGACGATGAATTTGAAGCAGAGGAAGCAA-AAGATGATCTTGATGGAGA-AAAT 400 Query 419 GACGTTGTTTTTGTAACTGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 478 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 401 GACGTTGTTTTTGTAACGGATGGAGACAGTGATTTGGGTCAGATGATTATACTGCAACTG 460 Query 479 ATTGTGAAAGGAACTCGGGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 538 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 461 ATTGTGAAAGGGACTCGAGTTAAAGCACTTGTGAAGGACAAAAGAAAGGCTTTGGAAGCT 520 Query 539 TTTGGATCTTATGTTGAGTTGACGACTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 598 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 521 TTTGGATCTTATGTTGAGTTGACGTCTGGAGATGCAAGCGACGAGCGTTTCTTAAAGAAA 580 Query 599 GCTTTTAAGGGTGTTGGTGCGGTCATATCCCCGACAGAAGGTTTCTTATCGATTGTCAAG 658 ||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 581 GCTTTTAAGGGCGTTGGTGCGGTCATATCCCCGACTGAAGGTTTCTTATCGAATGTCAAG 640 Query 659 AGTTTTAGAGGTGTAAAACACGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 718 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 641 AGTTTAAGAGGTGTAAAACATGCAGTTCTCTTGTCTCAGTTGTCTGTTTATGAAAGCAGC 700 Query 719 GGCGGAATTCAAGCTATGATGAATAGCAAAGCCAAAAAACTGGCCGAGCAAGATGAAAAC 778 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 701 GGCGGAATTCAAGCTATGATGAATAACAAAGCCAAAAAACTGGCTGAGCAAGATGAAAAC 760 Query 779 GCCGCTATATCTTCAAATGTCCCTTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 838 ||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 761 ACCGTTATATCTTCGAATGTCCCCTATACAATCATAAGAACAGGCAAGCTGGAGAACAGT 820 Query 839 CCTGGAGGGAGTCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 898 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 CCTGGAGGGAATCAAGGCTTCAACTTTAGCGCGGGTGCTGCAGCCAAAGGAAGCATAAGC 880 Query 899 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCACTAAGTGTGATCCCACCAACAGGGTTG 958 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 881 AAGGAAGATGCTGCTCGTATATGTGTTGAAGCGTTAAGTGTGATCCCACCAACAGGGTTG 940 Query 959 ATATTTGAGGTTACGAATGGAGAAGAGGTTGTATCTGACTGGGAAGGACAATTGATGAAA 1018 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 941 ATATTTGAGGTTACGAATGGAGAAGAAGTTGTATCTGACTGGGAAGGACAGTTGATGAAA 1000 Query 1019 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1071 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 GTGATGCAGAGACAGAGTGACAAGAAGTAAGCTTCAAAGCTGAGATGAACAGA 1053 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41287119111 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5