BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72710.1
Length=2086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476408 jgi|Araly1|476408|fgenesh2_kg.2__1538__AT1G72710.1 2979 0.0
> Ahg476408 jgi|Araly1|476408|fgenesh2_kg.2__1538__AT1G72710.1
Length=1909
Score = 2979 bits (1613), Expect = 0.0
Identities = 1807/1897 (95%), Gaps = 27/1897 (1%)
Strand=Plus/Plus
Query 1 CCCTTCCCTTTTGGGATATTTTCGCCGCGTGGA-TTGATATGACGACTCTCTTTCGCCGG 59
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 CCCTTCCCTTTTGGGATATTTTCGCCGCGTGGATTTGATATGTCGACTCTCTTTCGCCGG 60
Query 60 AAGTCAATCGGAATCC-GCGACAACTTCTTCCTTCAATCCCTTTGA-tttttttttGGCT 117
|||||||||||||||| | | |||||||||||| | |||||||| |||||||||||||
Sbjct 61 AAGTCAATCGGAATCCATC-CCTACTTCTTCCTTCTACCCCTTTGATTTTTTTTTTGGCT 119
Query 118 CTAC---TTATCCCAAACCCT-TCAAATCTTCAGGTCCAATCTCTTCTTCTATTTGTTTT 173
|||| ||||| || | | | |||||||||||||||||||||| |||||| ||||||||
Sbjct 120 CTACTTATTATCTCAGA-CTTCTCAAATCTTCAGGTCCAATCTCGTCTTCTGTTTGTTTT 178
Query 174 TTAATTaaaaaaaTCCGGCGAAAGGTGAAGCTCTTGGATTCGAGTGGTGGCTAGTAATC- 232
|| || ||||||||||||| |||||| ||||||| |||||||| || |||||
Sbjct 179 TT--TT-----TTTCCGGCGAAAGGTAAAGCTCCTGGATTCTAGTGGTGGATATTAATCG 231
Query 233 GATTTCGGTAGTTTAGAAGTAGTTTATAGGTTTTATCAGCTTTCGATTTGATGGAGCCGC 292
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 232 GGTTTCGGTAGTTTAGAAGTAG-TTGTAGGTTTTATCAGCTTTCGATTTGATGGAGCCGC 290
Query 293 GAGTCGGAAACAAGTTTCGGCTCGGAAGGAAGATCGGCGGTGGATCATTCGGAGAGATCT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAGTCGGAAACAAGTTTCGGCTCGGAAGGAAGATCGGCGGTGGATCATTCGGAGAGATCT 350
Query 353 ATCTTGGTACCAATATCCAGACGAATGAAGAAGTGGCTATTAAACTTGAAAATGTGAAAA 412
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATCTTGGTATCAATATCCAGACGAATGAAGAAGTGGCTATTAAACTTGAAAATGTGAAAA 410
Query 413 CTAAGCATCCTCAGTTGCTGTATGAATCAAAGTTGTACAAAGTA-TTACAAGGAGGAACT 471
||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||
Sbjct 411 CTAAGCATCCTCAGTTGCTCTATGAATCAAAATTGTACAAAGTACTT-CAAGGAGGAACT 469
Query 472 GGCGTTCCAAACGTTAAATGGTATGGTGTTGAAGGGGACTATAATGTCCTCGTGATAGAC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GGCGTTCCAAACGTTAAATGGTATGGTGTTGAAGGGGACTATAATGTCCTCGTGATAGAC 529
Query 532 TTGTTGGGGCCTAGCCTTGAAGATCTATTCAATTTCTGTAGTAGGAAACTCTCACTAAAG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTGTTGGGGCCTAGCCTTGAAGATCTATTCAATTTCTGTAGTAGGAAACTCTCACTAAAG 589
Query 592 ACTGTACTAATGCTTGCAGATCAAATGATCAATCGCATTGAGTTTGTACATCAGAAGTCA 651
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 ACTGTACTAATGCTTGCAGATCAAATGATCAATCGCATTGAGTTTGTCCATCAGAAGTCA 649
Query 652 TTTCTACATCGGGACATCAAGCCTGACAACTTTCTGATGGGTCTTGGAAGGCGTGCAAAT 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 650 TTTCTACATCGGGACATCAAGCCTGACAACTTTCTGATGGGTCTTGGGAGGCGCGCTAAT 709
Query 712 CAGGTATACGTCATCGACTTTGGTCTGGCAAAGAAGTACAGAGACTCAAATCATCAGCAT 771
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 710 CAGGTATATGTTATCGACTTTGGTCTGGCAAAGAAGTATAGAGACTCAAATCATCAGCAT 769
Query 772 ATTCCATATAGGGAAAACAAAAACTTGACTGGAACTGCTAGATACGCTAGCATGAACACT 831
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 770 ATTCCTTACAGGGAAAACAAAAATTTGACTGGAACTGCTAGATACGCTAGCATGAACACT 829
Query 832 CACCTTGGCATTGAACAAAGTCGTAGAGATGATTTGGAGTCACTTGGATTCGTTCTCATG 891
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 830 CATCTTGGCATTGAACAAAGTCGTAGAGATGATTTGGAGTCACTTGGATTTGTTCTCATG 889
Query 892 TACTTCTTAAAAGGAAGTCTTCCTTGGCAAGGACTGAAAGCTGGCAATAAGAAGCAAAAG 951
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 890 TACTTCTTAAAAGGAAGTCTTCCTTGGCAAGGACTGAAAGCTGGAAATAAGAAGCAAAAG 949
Query 952 TATGAGAAAATCAGTGAAAAGAAAGTATCGACATCTATTGAGGCTTTATGCCGAGGTTAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TATGAGAAAATCAGTGAAAAGAAAGTATCGACATCTATTGAGGCTTTATGCCGAGGTTAT 1009
Query 1012 CCATCTGAATTTGCATCTTATTTCCATTATTGCCGTTCTCTGAGATTTGACGACAAGCCA 1071
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1010 CCATCTGAATTTGCATCTTATTTCCATTATTGCCGTTCTCTGAGATTCGACGACAAGCCA 1069
Query 1072 GACTATGCCTACCTGAAACGGCTTTTCCGCGACCTGTTTATTCGTGAAGGCTTCCAGTTT 1131
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1070 GACTATGCCTACCTGAAACGGCTTTTCCGTGACCTGTTTATTCGTGAAGGATTCCAGTTT 1129
Query 1132 GATTATGTATTTGATTGGACGATCTTGAAGTATCAGCAATCACAGATTTCTACTCCTCCT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GATTATGTATTTGATTGGACGATCTTGAAGTATCAGCAATCACAGATTTCTACTCCTCCT 1189
Query 1192 CCTCGTCATCATGGTCCTGTAGTTGGGCCAAGCTCTGCCCTCCCCCCTGCCATTACCAGT 1251
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1190 CCTCGTCATCATGGTCCAGTAGTTGGGCCAAGCTCTGGCCTCCCCCCTGCCATTACTAGT 1249
Query 1252 GCTGAGAGGCCATCAGGTGGCGACGAAGCTAGACCTTCTGGCTGGTCATCAGGAATCCCT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GCTGAGAGGCCATCAGGTGGCGACGAAGCTAGACCTTCTGGCTGGTCATCAGGAATCCCT 1309
Query 1312 AGACGAAATTCTGGACAAATTTTTAACTCAGGAAGCTTAGCTAAACAAAAAGCACCAGTT 1371
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AGACGAAGTTCTGGACAAATTTTTAACTCAGGAAGCTTAGCTAAACAAAAAGCACCAGTT 1369
Query 1372 TCAAGTGATCCTGCAATATCTAAAGATGTAGTGTTATCAAGCTCTAGCTTTCTCCGCGCA 1431
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1370 TCAAGTGATCCTGCAATATCTAAAGATGTAGTGTTATCGAGCTCTAGCTTTCTTCGCGCA 1429
Query 1432 ACTGGGTCATCAAGACGTGCTGCTGTATCCAGTAGTCGCGAAGCTGCAGTTCTGGGAACT 1491
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1430 ACTGGGTCATCAAGACGTGCTGCTGTATCTAGTAGTCGCGAGGCTGCAGTTCTGGGAACC 1489
Query 1492 GATTCTGAGCCATCAAACCCTCAAATCGTTGAAGCTGGATCAGGCTCCAATTCAAAGATC 1551
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1490 GAGTCTGAGCCATCAAACCCTCAAATCATTGAAGCTGGATCAGGCTCCAATTCAAAGATC 1549
Query 1552 CCTGTTAGTCGAAACTCACCTATCGTCTCATCTGAGATCAACAAGCTATCATCACCTTCA 1611
|||||| |||||| ||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1550 CCTGTTGGTCGAAGCTCTCCTATTGTCTCATCTGAGATCAACAAGCTATCCTCACCTTCA 1609
Query 1612 AGGGCGACTACTTCAGTCATGAAGAACTATGAGGCTAATCTTAAAGGGATCGAGAGTCTG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AGGGCGACTACTTCAGTCATGAAGAACTATGAGGCTAATCTTAAAGGGATCGAGAGTCTG 1669
Query 1672 CATTTTTAGTCGTTGGGGCCAGTGAATGATCTTGAAACCCCGGGACAAGTGTAAATTAAA 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CATTTTTAGTCGTTGGGGCCAGTGAATGATCTTGAAACCCCGGGACAAGTGTAAATTAAA 1729
Query 1732 AGACAAA-GATGACCTCTCTTAGGCCCTCCTCATGTTTTACGTGCATTTGTGTTTACAGG 1790
||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1730 AGACAAAAGAAAACCTCTCTTAGGCCCTCCCCATGTTTTACGTGCATTTGTGTTCACAGG 1789
Query 1791 GAGGGAGACTT-----GTGCCTCTAAGCACACACTCTAATAACATAGATAAGGAAAAGAC 1845
||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1790 GAGGGAGACTTTACTTGTGCCTGTAAGCACACACTCAAATAACAAAGATAAGGAAAAGAC 1849
Query 1846 TCTGAAGAAGTGATTTTCAGAGAAAGACAAACTCAAA 1882
||||||||||||||| ||||||||||||||||||||
Sbjct 1850 TCTGAAGAAGTGATTC-CAGAGAAAGACAAACTCAAA 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78465904700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5