BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72770.1
Length=2551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926642 jgi|Araly1|926642|scaffold_202203.1 2344 0.0
Ahg920676 jgi|Araly1|920676|scaffold_101957.1 911 0.0
> Ahg926642 jgi|Araly1|926642|scaffold_202203.1
Length=1584
Score = 2344 bits (1269), Expect = 0.0
Identities = 1499/1603 (94%), Gaps = 44/1603 (3%)
Strand=Plus/Plus
Query 566 TCTCTGATTTTGGAGAGCTCATGGAGGAGATGACTCCCGCAGTTGCAATGACTCTTAGCT 625
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 TCTCTGATTTTTGAGAGCTCATGGAGGAGATGACTCCGGCAGTTGCAATGACTCTGAGCT 60
Query 626 TAGCAGCCAACACCATGTGTGAATCATCACCTGTCGAGATCACTCAGCTAAAGAACGTTA 685
||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 61 TAGCAGCTAACACCATGTGTGAATCATCGCCTGTAGAGATCACTCAGCTTAAGAACGTTA 120
Query 686 CTGATGCAGCTGACTTGTTATCTGATTC-TGAAAATCAAAGCTTTTGCAACGGAGGGACT 744
||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct 121 CTGATGCAGCTGACTTGTTATCTGA-TCAAGAAAATGAAAGCTTTTGCAACGGAGGGACT 179
Query 745 GAATGCACTATGGAAGATGTTTCTGAACTGGAAGAGGTAGGTGAACAGGATTTGTTGAAA 804
||||| | | || | ||||||||||||| |||| |||||||||||||
Sbjct 180 GAATG--C----------G---CT--A-TGGAAGAGGTAGGCGAACCGGATTTGTTGAAA 221
Query 805 ACTTTATCCGATACGAGAAGCGGGTCTTCCAATGTTTTTGATGAAGACGATGTATTGTCT 864
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 222 ACTTTATCCGATACGAGAAGCGGGTCTTCTAATGTTTTTGACGAAGACGAGGTATTGTCT 281
Query 865 GTTGTGGAGGATAATAGTGCTGTCATAAGTGAGGGCTTGTTAGTTGTTGATGCAGGCTCT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTTGTGGAGGATAATAGTGCTGTCATAAGTGAGGGCTTGTTAGTTGTTGATGCAGGCTCT 341
Query 925 GAATTAAGCTTGTCTAATACAGCTATGGAAATAGATAACGGGCGAGTTCTTGCAACCGCG 984
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 342 GAATTAAGCTTGTCTGATACAGCTATGGAAATAGATAACGGGCGAGTGCTTGCCACAGCG 401
Query 985 ATTATCGTAGGCGAATCAAGCATTGAGCAGGTTCCCACCGCGGAAGTTCTTATCGCGGGT 1044
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 402 ATTATCGTAGGCGAATCAAGCATCGAGCAGGTTCCCACTGCGCAAGTTCTTATCGCGGGT 461
Query 1045 GTAAATCAGGATACCAATA-----------C----T-T--CGG----AG-G-TTGTCATT 1080
|| ||||||||||| |||| | | | ||| || | ||||||||
Sbjct 462 GTGAATCAGGATACAAATAGAGAAGATGGTCCAGGTGTAACGGCTTCAGAGGTTGTCATT 521
Query 1081 AGATTGCCAGATGAAAATAGTAATCATCTGGTGAAAGGGAGAAGTGTTTATGAACTAGAT 1140
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CGATTGCCAGAAGAAAATAGTAATCATCTGGTGAAAGGGAGAAGTGTTTATGAACTAGAT 581
Query 1141 TGTATACCGCTTTGGGGCACGGTTTCCATTCAAGGGAATAGATCTGAGATGGAGGATGCT 1200
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 582 TGTATACCGCTTTGGGGCACGGTTTCAATTCAAGGTAATAGATCTGAGATGGAGGATGCT 641
Query 1201 TTTGCCGTGTCACCTCATTTTCTGAAACTACCCATCAAAATGCTTATGGGGGACCATGAG 1260
|||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 642 TTTGCCGTGTTACCTCATTTTCTGAAATTACCCATCAAAATGCTAATGGGGGACCATGAG 701
Query 1261 GGTATGAGTCCAAGCCTCACACACCTCACCGGTCATTTTTTCGGTGTTTATGATGGTCAT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 702 GGTATGAGTCCAAGCCTCACACACCTCACCGGTCATTTTTTCGGTGTTTATGATGGCCAC 761
Query 1321 GGAGGCCATAAGGTTGCTGACTATTGCCGAGATAGACTCCATTTTGCTTTGGCTGAAGAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGAGGCCATAAGGTTGCTGACTATTGCCGAGATAGACTCCATTTTGCTTTGGCTGAAGAA 821
Query 1381 ATAGAACGTATAAAAGACGAATTATGCAAGAGGAATACAGGAGAGGGTAGGCAGGTGCAG 1440
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 822 ATAGAACGTATAAAAGACGAATTATGCAAGAGAAACACAGGAGAGGGTAGGCAGGTCCAG 881
Query 1441 TGGGATAAAGTCTTCACGAGTTGTTTTCTAACTGTCGATGGTGAGATTGAAGGAAAAATT 1500
||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||
Sbjct 882 TGGGATAAAGTCTTCACTAGTTGTTTTCTTACCGTCGATAGTGAGATTGAAGGAAAAATT 941
Query 1501 GGTAGAGCCGTTGTTGGTTCTTCTGATAAGGTTCTTGAGGCTGTTGCGTCTGAGACCGTA 1560
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 942 GGCAGAGCCGTTGTTGGTTCTTCTGATAAGGTTCTCGAGGCTGTTGCCTCTGAGACCGTA 1001
Query 1561 GGATCAACTGCTGTTGTTGCCTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGT 1620
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGATCAACTGCTGTGGTTGCTTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGT 1061
Query 1621 GATTCGAGGGCGGTTTTATTCCGTGGCAAAGAAGCCATGCCCTTGTCAGTTGATCACAAA 1680
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1062 GATTCAAGGGCCGTTTTATTCCGTGGCAAAGAAGCCATGCCCTTATCAGTTGATCACAAA 1121
Query 1681 CCAGATAGAGAGGATGAATATGCAAGAATAGAAAATGCTGGAGGCAAAGTTATACAATGG 1740
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1122 CCAGATAGAGAGGATGAATACGCAAGAATAGAAAATGCTGGAGGCAAAGTCATACAATGG 1181
Query 1741 CAAGGCGCACGTGTTTTTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGATATCTG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CAAGGCGCACGTGTTTTTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGATATCTG 1241
Query 1801 AAGCCATATGTGATCCCAGAACCGGAAGTGACATTCATGCCTCGGTCAAGAGAAGACGAG 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AAGCCATATGTGATCCCAGAACCGGAAGTGACATTCATGCCTCGGTCAAGAGAAGACGAG 1301
Query 1861 TGTCTCATACTAGCCAGTGACGGTCTTTGGGATGTAATGAACAACCAAGAAGTCTGCGAA 1920
||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1302 TGTCTGATACTAGCCAGTGACGGTCTTTGGGATGTAATGAGCAACCAAGAAGTTTGCGAA 1361
Query 1921 ATAGCAAGGAGACGGATATTGATGTGGCACAAGAAGAACGGTGCACCGCCTCTAGCAGAG 1980
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1362 ATAGCAAGGAGACGGATCTTGATGTGGCACAAGAAGAACGGAGCACCGCCTCTATCAGAG 1421
Query 1981 AGAGGCAAAGGAATAGATCCAGCTTGCCAAGCCGCAGCTGACTACCTCTCAATGCTTGCT 2040
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1422 AGAGGCAAAGGAACAGACCCAGCTTGCCAAGCCGCGGCTGACTACCTCTCAATGCTTGCT 1481
Query 2041 CTACAAAAAGGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGA 2100
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CTTCAAAAAGGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGA 1541
Query 2101 AAGTTCAAGACCAGAACCTGAAGCTTAATTACAAGCAGTACGC 2143
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1542 AAGTTCAAGACCAGAACCTGAAGCTTAATTACAAACAGTACGC 1584
> Ahg920676 jgi|Araly1|920676|scaffold_101957.1
Length=1588
Score = 911 bits (493), Expect = 0.0
Identities = 1024/1273 (80%), Gaps = 66/1273 (5%)
Strand=Plus/Plus
Query 889 ATAAGTGAGGGCTTGTTAGTTGTTGATGC-AGGCTCTGA-ATTAAGCTTGTCTA-ATACA 945
||||| ||||| || ||||||| || || ||| ||||| | |||| ||| | | |||||
Sbjct 324 ATAAGCGAGGGTTTAATAGTTGTGGACGCTAGG-TCTGAGA-TAAGTTTG-CCAGATACA 380
Query 946 GCTATGGAAATAGATAACGGGCGAGTTCTTGCAACCGCGATTATCGTAGGCGA-ATCAAG 1004
| | | |||| ||||||||| ||||||||||| |||||||| ||| || ||| | |||
Sbjct 381 G-T-T-GAAACAGATAACGGTCGAGTTCTTGCTACCGCGATCATCCTAAACGAGA-CAAC 436
Query 1005 CATTGAGCAGGTTCCCACCGCGGAAGTTCTTATCGCGGGTGTAAAT--C-A-G-G-ATA- 1057
||| || ||||||||||| || ||||||||||| || || | ||| | | | | |||
Sbjct 437 CATAGAACAGGTTCCCACTGCAGAAGTTCTTATTACGAGTCTGAATCACGATGTGAATAT 496
Query 1058 CCA-AT----ACTTCGGAGGTTGTCATTAGATTGCCAGATGAAAATAGTAAT-CATCTGG 1111
| | ||||| ||||| || ||||| ||||| || |||||| |||| | | |
Sbjct 497 GGAGGTGGCAACTTCTGAGGTAGTTATTAGGTTGCCTGAAGAAAATCCTAATGTAGCAAG 556
Query 1112 TGAAAGGGAGAAGTGTTTATGAACTAGATTGTATACCGCTTTGGGGCACGGTTTCCATTC 1171
| || | |||||||| ||||||||||| |||||||| |||||||||||| |||| |||
Sbjct 557 AGGAA-GCAGAAGTGTCTATGAACTAGAGTGTATACCTCTTTGGGGCACGATTTCGATTT 615
Query 1172 AAGG-GAATAGATCTGAGATGGAGGATGCT-TTTGCCG-TGTCACCTCATTTTCTGAA-A 1227
|| | | |||||||| |||||||||||| || | | | | |||||||||||| || |
Sbjct 616 GCGGTGGA-AGATCTGAAATGGAGGATGCTGTTAG-AGCT-TTACCTCATTTTCTCAAGA 672
Query 1228 CTACCCATCAAAATGCTTATGGGGGACCATG-AGGGTATGAGTCCAAG-CCTCACACACC 1285
||||||||||||||||||||||||| |||| |||| ||||||||||| | || || | |
Sbjct 673 -TACCCATCAAAATGCTTATGGGGGATCATGAAGGG-ATGAGTCCAAGTCTTC-CATATC 729
Query 1286 TCACCGGTCA-TTTTTTCGGTGTTTATGATGGTCATGGAGG-CCATAAGGTTGCTGACTA 1343
|||| |||| || ||| ||||| |||||||| || ||||| | | |||||||||||||
Sbjct 730 TCACTAGTCACTTCTTT-GGTGTATATGATGGCCACGGAGGTGC-TCAGGTTGCTGACTA 787
Query 1344 TTGCCGA-GATAGACTCCATTTTGCTTTGGCTGAAGAAATAGAACGTATAAAAGACGAAT 1402
||||| | |||||| |||| | |||||||||||||||||| ||||| || ||||| ||||
Sbjct 788 TTGCC-ATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGAAT 846
Query 1403 TATGCAAGAGGAATACAGGAGAGGGTAGGCAGGTGCAGTGGGATAAAGTC-TT-CACGAG 1460
| || | |||||| || || ||||| |||||||| |||||||| |||||| || | ||
Sbjct 847 TGTGTAGGAGGAACACTGGCGAGGGCAGGCAGGTCCAGTGGGAGAAAGTCTTTGTA-GA- 904
Query 1461 TTGTTTTCTAACTGTCGATGGTGAGATTGAAGGAAAAATTGGTAGAGCC-GTTGTTGGTT 1519
||||| |||| ||||||| |||| || |||| ||||| ||| || ||||||||||
Sbjct 905 TTGTTACCTAAAGGTCGATGATGAGGTTAAAGGGAAAATCAACAGA-CCTGTTGTTGGTT 963
Query 1520 CTTCTGATA--A-GGTTCTTGAGGCTGTTGCGTCTGAGACCGTAGGATCAACTGCTGTTG 1576
||||||||| | ||||||||| |||||| | |||| ||||| |||||||||||||| |
Sbjct 964 CTTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTCGGATCAACTGCTGTGG 1023
Query 1577 TTGCCTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGTGATTCGAGGGCGGTTT 1636
|||| |||||||| ||||| |||||| |||| || ||||| ||||| || || || ||||
Sbjct 1024 TTGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCTAGAGCAGTTT 1083
Query 1637 TATTCCGTGGCAAAGAAGCCATGCCCTTGTCAGTTGATCACAAACCAGATAGAGAGGATG 1696
|| |||| |||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1084 TACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATG 1143
Query 1697 AATATGCAAGAATAGAAAATGCTGGAGGCAAAGTTATACAATGGCAAGGCGCACGTGTTT 1756
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1144 AGTATGCAAGAATAGAAAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTT 1203
Query 1757 TTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGA-TATCTGAAGCCATATGTGATC 1815
||| ||||| |||||||| |||||||||||||| || |||||| |||||||||| ||
Sbjct 1204 CTGGCGTTCTTGCCATGTCCAGGTCCATCGGTGAT-GAATATCTGGAGCCATATGTAATA 1262
Query 1816 CCAGAACCGGAAGTGACATTCATGCCTCG-GTCAAGAGAAGACGAGTGTCTCATACTAGC 1874
||||| || |||||||| || ||||| || | | ||||||||||||||||| ||| | ||
Sbjct 1263 CCAGATCCCGAAGTGACGTTTATGCCACGAG-CTAGAGAAGACGAGTGTCTTATATTGGC 1321
Query 1875 CAGTGACGGTCTTTGGGATGTAATGAACAACCAAGAAGTCT-GCGAAATAGCAAGGAGAC 1933
|||||| || |||||||| ||||||| |||||||||| || | || | || ||||| |
Sbjct 1322 CAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAG-CTTGTGATTTTGCGAGGAGGC 1380
Query 1934 GGATATTGA-TGTGGCACAAGAAGAACGGTGCACCGCCTCTAGCAGAGAGAGGCAAAGGA 1992
|||| ||| | |||||||||||||| || ||| |||| |||| |||||||| |||
Sbjct 1381 GGATCTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCCGAGAGAGGTGTAGGG 1439
Query 1993 -ATAGATCCA-GCTTGCCAAGCCGCAGCTGACTACCTCTC-AATGCTTGCTCTACAAAAA 2049
| ||| ||| || || |||||||| ||||| || ||||| || || ||||| |||||
Sbjct 1440 GA-AGA-CCATGCGTGTCAAGCCGCGGCTGAATATCTCTCCAAA-CTCGCTCTTCAAAAG 1496
Query 2050 GGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGAAAGTTCAAG 2109
||||| |||||||| ||||| ||||| ||| | |||||||||||||||||||||||||||
Sbjct 1497 GGAAGCAAAGACAATATCTCAATCATAGTGGTCGACTTGAAAGCTCAAAGAAAGTTCAAG 1556
Query 2110 ACCAGAACCTGAA 2122
|||||| | ||||
Sbjct 1557 ACCAGATCTTGAA 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96177868625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5