BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72950.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908906 jgi|Araly1|908906|Al_scaffold_0002_1987 1557 0.0
Ahg908905 jgi|Araly1|908905|Al_scaffold_0002_1986 1221 0.0
> Ahg908906 jgi|Araly1|908906|Al_scaffold_0002_1987
Length=1122
Score = 1557 bits (843), Expect = 0.0
Identities = 1049/1145 (92%), Gaps = 28/1145 (2%)
Strand=Plus/Plus
Query 1 ATGTCAGATTCTTCAAACACCCTCCCAAAGTTTGATGTTTTTCTGAGCTTCAGAGGACTC 60
||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCAGATACTTCAATTACCATCCCAAAGTTTGATGTTTTTCTGAGTTTCAGAGGACTC 60
Query 61 GACACTCGCCGCAGCTTCATCAGTTTCCTCTACAAAGAACTGATTCGAAGAAACATTCGA 120
||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 61 GACACTCGCCGCAACTTCATCAGTTTCCTCTACAACGAACTGGTCCGAAGAAACATTCGA 120
Query 121 ACCTTT-AAAGACGATAAGGAGTTGAAGAATGGCCGGAGGATTACGCCGGAGCTAATACG 179
| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 A-CTTTCAAAGACGACAAGGAGTTGAAGAATGGCCGGAGGATTACGCCGGAGCTCGTACG 179
Query 180 CGCCATTGAAGGGTCGAGATTCGCAGTCGTTGTGGTCTCCGTGAATTACGCTGCGTCTCG 239
|||||| || ||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 CGCCATCGAGGGGTCGAAATTCGCCGTCGTTGTGGTCTCTGTGAATTACGCTGCGTCTCG 239
Query 240 TTGGTGTCTCGAAGAGCTCGTGAAGATTATGGATTTCGAAAACATGGGCTCGCTCAAGGT 299
|||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 240 TTGGTGTCTCGAGGAGCTCGTGAAGATCATGGATTTCGAAAACAAGGGATCGCTCAAGGT 299
Query 300 CATGCCTATCTTCTACGGCGTGGATCCGTGTCATGTGAGGAGACAGATCGGAGAAGTCGC 359
|||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||
Sbjct 300 GATGCCTATCTTCTACGGCGTAGATCCGTGTCATGTGAGGAGGCAGACCGGAGTAGTCGC 359
Query 360 TGAACAGTTTAAGAAGCATGAGGGTAGAG-A--AGATCATGAGAAAGTGCTTTCATGGAG 416
||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||
Sbjct 360 TGAACAGTTTAAGAAGCATGAGGCTAGAGAAGGAGATCACGAGAAAGTGCTTTCATGGAG 419
Query 417 GCAAGCGTTGACTAATTTGGCGAGTATCTCCGGCGATTGTTCATGGAAATGGGAAGATGA 476
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GCAAGCATTGACCAATTTGGCGAGTATCTCCGGCGATTGTTCATGGAAGTGGGAAGATGA 479
Query 477 CTCGAAGATGGTCGAAGAAATTACTGACAGGATATCAAAAGAGCTGATGATTGATACAAC 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCGAAGATGGTCGACGAAATTACTGACAGGATATCAAAAGAGCTGATGATTGATACAAC 539
Query 537 AAGAAGCAATGGGAGTGACCTTGAAGGGATTGATGCACACATGAAAGCTCTTCACCGTTT 596
|||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 540 AAGACGCAATGGGAGTGATCTTGAGGGGATTGCTGCACACATGAAAGCTCTTCACCGATT 599
Query 597 ATTGAATTTAAATTCTAAGAAAAGTGTGAGAGTGATTGGGATTTGGGCAAGAGGAGGCAA 656
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 600 ACTGAATTTGAATTCTAAGAAGAGTGTGAGAGTGATTGGGATTTGGGCAAGAGGATACAA 659
Query 657 TGGTAGATCAGCTTTAGCTAAATTTGTTTATCAGAACATCTGTCAACACTTCGAAAGCCA 716
||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TGGTAGATCGGCTCTAGCTAAATTTGTTTATCAGAACATCTGTCAACACTTTGAAAGCCA 719
Query 717 TTGTTTCTTGGAAAGTGTGAAAAGGATTTCTCAGGATCGCCACCTGTCTCACTTACACGA 776
||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 720 TTGTTTCCTGGAAAGTGTGAAAAGGATTTCTCAGGATCGCC----GT-----------GA 764
Query 777 AGAGTTTATGATACGGATTCAAGGA-GAATGCTTGAGTAAATTAAGGCTCAAGAACCAAA 835
|||||| |||||||||||||| ||| ||||||||||| ||||| | ||||||||||
Sbjct 765 AGAGTTAATGATACGGATTCA-GGAAGAATGCTTGAGCAAATT----C--AAGAACCAAA 817
Query 836 AGGTTCTGCTCGTGGCTGATGATGTGAATAAGCTTGAACAGTTAGATGCTCTTGCAGAGG 895
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 818 AGGTTCTGCTTGTTGCTGACGATGTCAATAAGCTTGAACAGTTAGATGCTCTTGCAGAGG 877
Query 896 ACTTTAACTGCTTTGGTCCTGGGAGTATAGTTATTATCACTACACAAGACAGGCAGCTGC 955
|||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||||
Sbjct 878 ACTTTAACTGTTTTGGTCCAGGGAGTATAGTTATCATCACTACACAAGACAAGCAGCTGC 937
Query 956 TTATCTCTGCTGGCATAAAACTTGTTTATGAAGTAGAGCTTCTCAGATTCCAGAAAGTTC 1015
|||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 938 TTATTTCTTCTGGCATAAAGCTTGTTTATGAAGTAGAGCTTCTGAGATTCCAGAAAGTTC 997
Query 1016 GTGGACTCTTCAGACAATTAGCCTTCAAAGAGAAAGACATTTCTGCTGCGTTCGAGGTGT 1075
||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||
Sbjct 998 GTGGACTCTTCAGACAATTAGCCTTCAGAGAGAAAGACTTTTCTGCAGCGTTTGAGGTGT 1057
Query 1076 CTTTGTATAGGGCAACGAATGTTGCCATGGAATGGTTAGGTTGTATATGTGGTAGATCAG 1135
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1058 CTTTGGATAGGGCAACGAATGTTGCCATGGAATGGTTAGGTTGTCTATGTGGTAGATCTG 1117
Query 1136 GTTAG 1140
||||
Sbjct 1118 ATTAG 1122
> Ahg908905 jgi|Araly1|908905|Al_scaffold_0002_1986
Length=1137
Score = 1221 bits (661), Expect = 0.0
Identities = 978/1127 (87%), Gaps = 37/1127 (3%)
Strand=Plus/Plus
Query 34 GATGTTTTTCTGAGCTTCAGAGGACTCGACACTCGCCGCAGCTTCATCAGTTTCCTCTAC 93
||||| |||||||| |||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 28 GATGTCTTTCTGAGTTTCAGAGGACTCGACACTCGTCGCAACTTCATCAGTTTTCTCTAC 87
Query 94 AAAGAACTGATTCGAAGAAACATTCGAACCTTTAAAGACGATAAGGAG-TTGAAGAATGG 152
|||||| || |||||||||||||||| ||||| ||| |||| |||||| ||| |||||||
Sbjct 88 AAAGAATTGGTTCGAAGAAACATTCGTACCTTCAAACACGACAAGGAGCTTG-AGAATGG 146
Query 153 CCGGAGGATTACGCCGGAGCT-AATACGCGCCATTGAAGG-GTCGAGATTCGCAGTCGTT 210
|||||||||| |||||||||| || ||||||||| | ||| ||||| |||||| ||||||
Sbjct 147 CCGGAGGATTTCGCCGGAGCTCAA-ACGCGCCATCG-AGGAGTCGAAATTCGCCGTCGTT 204
Query 211 GTGGTCTCCGTGAATTACGCTGCGTCTCGTTGGTGTCTCGAAGAGCTCGTGAAGATTATG 270
|| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 205 GTTGTCTCTGTGAATTACGCTGCGTCTCCTTGGTGTCTCGATGAGCTCGTGAAGATCATG 264
Query 271 GATTTCGAAAACATGGGCTCGCTCAAGGTCATGCCTATCTTCTACGGCGTGGATCCGTGT 330
||||||||||||| ||| ||| ||| || ||||||||||||||||| ||||||||||||
Sbjct 265 GATTTCGAAAACAAGGGTTCGATCACTGTGATGCCTATCTTCTACGGAGTGGATCCGTGT 324
Query 331 CATGTGAGGAGACAGATCGGAGAAGTCGCTGAACAGTTTAAGAAGCATGAGGGT--AG-A 387
||| |||||||||||| |||||| ||||||||||||||||||||||| |||| | || |
Sbjct 325 CATTTGAGGAGACAGAGCGGAGATGTCGCTGAACAGTTTAAGAAGCACGAGGCTAGAGAA 384
Query 388 GAAGATCATGAGAAAGT-GCTTTCATGGAGGCAAGCGTTGACTAATTTGGCGAGTATCTC 446
||||||| ||| ||||| || ||||||||| | ||| ||||| | |||||||||||||||
Sbjct 385 GAAGATCTTGATAAAGTAGC-TTCATGGAGACGAGCATTGACCAGTTTGGCGAGTATCTC 443
Query 447 CGGCGATTGTTCATGGAAATGGGAAGATGACTCGAAGATGGTCGAAGAAATTACTGACAG 506
|||||||||||||| |||||| |||||||| |||||| ||||||| |||||| ||||||
Sbjct 444 CGGCGATTGTTCATTGAAATGTGAAGATGAATCGAAGCTGGTCGACGAAATTGCTGACAA 503
Query 507 GATATCAAAAGAGCTGATGATTGAT-ACAACAAGAAGCAATGGGAGTGACCTTGAAGGGA 565
|||||||||| |||||||||||| | ||||||| ||||||||||||| |||| | ||||
Sbjct 504 GATATCAAAAAAGCTGATGATTG-TGACAACAATAAGCAATGGGAGTAACCTAGTTGGGA 562
Query 566 TTGAT-GCACACATGAAAGCTCTTCACCGTTTATTGAATTTAAATTCTAAGAAAAGTGTG 624
||||| | ||||||||| |||||| |||| |||| |||| ||||| || ||| || ||
Sbjct 563 TTGATAG-ACACATGAAGGCTCTTAACCGAAAATTGGATTTGAATTCCAACAAAGGTTTG 621
Query 625 AGAGTGATTGGGATTTGGGCAAGAGGAGGCAATGGTAGATCAGCTTTAGCTAAATTTGTT 684
|||||| |||||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 622 AGAGTGGTTGGGATTTGGGCAAGAGGATACAATGGTAGATCGGCTTTAGCTAAATATGTT 681
Query 685 TATCA-GAACATCTGTCAACACTTCGAAAGCCATTGTTTCTTGGAAAGTGTGAAAAGGAT 743
||||| ||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 682 TATCAGGAA-ATCTGTCAACACTTTGAAAGCCATTGTTTCTTGGGAAGCGTGAAAAGGAT 740
Query 744 TTCTCA-GGATCGCCACCTGTCTCACT-TACACGAAGAGTTTATGATACGGATTCAAGGA 801
||| || || ||||||| | || || | |||||||||||||| ||||| |||||||||||
Sbjct 741 TTCACATGG-TCGCCACTTATCGCA-TCTACACGAAGAGTTTCTGATAAGGATTCAAGGA 798
Query 802 GAATGCTTGAGTAAATTA-AGGCTCAAGAACCAAAAGGTTCTGCTCGTGGCTGATGATGT 860
|||| | |||||||| | | ||||||||||||||||||||||| ||||||||||||||
Sbjct 799 GAATACGTGAGTAAA-CAGAATCTCAAGAACCAAAAGGTTCTGCTTGTGGCTGATGATGT 857
Query 861 GAATAAGCTTGAACAGTTAGATGCTCTTGCAGAGGACTTTAACTGCTTT-GGTCCTGGGA 919
|||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||
Sbjct 858 CAATAAGCTTGAACAGTTAGATGCTCTTGCAGAGGACTTCAACT-CTTTTGGTCCGGGGA 916
Query 920 GTATAGTTATTATCACTACACAAGACAGGCAGCTGCTTATCTCTGCTGGCATAAAACTTG 979
|| | |||||||||||||||||||||| ||||||| || | |||||||| ||||| ||||
Sbjct 917 GTGTTGTTATTATCACTACACAAGACAAGCAGCTGTTTGTTTCTGCTGGTATAAAGCTTG 976
Query 980 TTTATGAAGTAGAGCTTCTCAGATTCCAGAAAGTTCGTGGACTCTTCAGA-CAATTAGCC 1038
||||||||||||||||| | ||||||||||||||| ||| |||| || || || || |||
Sbjct 977 TTTATGAAGTAGAGCTTTTGAGATTCCAGAAAGTTTGTGAACTCATCCGAACA-TTCGCC 1035
Query 1039 TTCAAAGAGAAAGACATTTCTGCTGCGTT-CGAGGTGTCTTTG-TATAGGGCAACGAATG 1096
|| ||| ||| |||||||||||||||||| | || || ||| || |||||||| |||
Sbjct 1036 TTTAAAAAGAGAGACATTTCTGCTGCGTTAC-AGTTGG-TTTACTACAGGGCAACAAATC 1093
Query 1097 TTGCCATG-GAATGGT-TAGGTTGTATATGTGGTAGATC-AGGTTAG 1140
|||||| | || |||| | ||||||||| |||||||||| || ||||
Sbjct 1094 TTGCCACGAGA-TGGTCT-GGTTGTATAAGTGGTAGATCTAG-TTAG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5