BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73010.1 Length=1172 Score E Sequences producing significant alignments: (Bits) Value Ahg476431 jgi|Araly1|476431|fgenesh2_kg.2__1561__AT1G73010.1 1583 0.0 Ahg920694 jgi|Araly1|920694|scaffold_101975.1 592 3e-168 > Ahg476431 jgi|Araly1|476431|fgenesh2_kg.2__1561__AT1G73010.1 Length=1102 Score = 1583 bits (857), Expect = 0.0 Identities = 1045/1130 (92%), Gaps = 36/1130 (3%) Strand=Plus/Plus Query 2 ATTCACAAACCAACAAGAACTCA-A-AGAGAGATCCATCAATTAGAATCACTAATTTCTT 59 ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| Sbjct 1 ATTCACAAACCAACAAGAACTCAGAGAGAGAGATCCATCAATTGGAATCACTAATTTCTC 60 Query 60 TAG-AAATTTCCTGAGTCATGGCTTACAATAGCAATAGCAATAACAACAACAACAACATT 118 ||| |||||| ||||||||||||||||||||||||| || || |||| |||||||||| Sbjct 61 TAGAAAATTT-CTGAGTCATGGCTTACAATAGCAAT---AACAAGAACAGCAACAACATT 116 Query 119 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 176 Query 179 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 236 Query 239 CTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 298 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTCATGGATCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 296 Query 299 CAAGTCTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATCAAATCTGCACAT 358 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 297 CAAGTCTTGAGAACAATCCCAATCCATCCACGTGTCGTCCCTGCCATCAAATCTGCTCAT 356 Query 359 GATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTCATCGAGACCATC 418 |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 357 GATTTAGGGTGTGAACTGAGGATAGTGAGTGATGCAAACATGTTTTTCATCGAGACCATC 416 Query 419 GTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAACCCAGGATATGTC 478 |||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct 417 GTTGAACATCTCGGGATTAGTGAATTATTCTCTGAGATCAACTCGAACCCAGGATATGTC 476 Query 479 GATGAACGTGGCACATTGAAAATCTCTCCCTACCACGACTTCACTAAATCCCCTCATAGC 538 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 477 GATGAACGTGGCACATTGAGAATCTCTCCCTACCACGACTTCACTAAATCGTCTCATGGC 536 Query 539 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCATTGAGAGGATTCAA 598 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 537 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGCTTGATCATTGAGAGAATTCAA 596 Query 599 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGCGAT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 597 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGTGAT 656 Query 659 TACTGTCCAAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCT 718 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TACTGTCCGAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCG 716 Query 719 GTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAAGCAGCGATTAGAGAATGGACC 778 ||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||| Sbjct 717 GTATGGGATCTGATTAGTAAAAATCCGATGCTGATTAAAGCAGGGATTAGAGAATGGACT 776 Query 779 GATGGCCAAAGCATGGAGATGATATTGATAGGAACGATCGAGGAGATTAGATTGGAGGAA 838 ||||| |||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||| Sbjct 777 GATGGTCAAAGCTTGGAGATGATATTAATAGGAACAATCGAAGAGATTATATTGGAGGAA 836 Query 839 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAATAATTGCAAGATGCAGACCATCTCTATC 898 |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| || Sbjct 837 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAACAATTGCAAGTTGCAGACTATCTCTGTC 896 Query 899 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 956 Query 959 AGTTAGACGTTTTTGAAATAGTGGAGGAAGAAGATTTACAACTGTGGTGTTTCTTCTTCC 1018 ||||||| ||||||||||||||||||||||||||||| | | | |||| | Sbjct 957 AGTTAGATGTTTTTGAAATAGTGGAGGAAGAAGATTT-C---T-T-------CTTC--C- 1001 Query 1019 TCATATATGCATAATTTGTAGTACGTACGATTCCAAAAAGATTG-AATTTATCCTA-A-A 1075 | ||||||| | |||||||||| | | ||||| |||||| ||||||||||| | | Sbjct 1002 T--TATATGCTTGATTTGTAGTA--T----T-CCAAAGAGATTGGAATTTATCCTATATA 1052 Query 1076 TTAA-T-ATTGTATGACGATGAAATTGCAAGAAGATTGCGATCTTTGTTT 1123 || | | ||| ||||||||||||||||||||||||| ||| ||||||| Sbjct 1053 TTGTGTGAGTGTTTGACGATGAAATTGCAAGAAGATTGTGATTTTTGTTT 1102 > Ahg920694 jgi|Araly1|920694|scaffold_101975.1 Length=901 Score = 592 bits (320), Expect = 3e-168 Identities = 590/717 (82%), Gaps = 32/717 (4%) Strand=Plus/Plus Query 110 AACAACATTGTCG-TTGT-TTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATA 167 |||||||| || | | || ||| || || |||||||| |||||||| || || || |||| Sbjct 39 AACAACATCGT-GATCGTCTTT-GATTTTGACAAGACAATCATCGATGTAGACAGTGATA 96 Query 168 ATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGC 227 ||||||| ||||||||||||| |||||||| |||||||| || |||||||| || |||| Sbjct 97 ATTGGGTTGTCGATGAACTTGGTTTCACTGAATTGTTCAACCAGCTTCTCCCAACAATGC 156 Query 228 CTTGGAACACACTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTG 287 |||||||| | |||||| | || ||||||||||||||||||||||| || |||||||||| Sbjct 157 CTTGGAACTCTCTCATGAATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTG 216 Query 288 AGGAGATCAAACAAGT-CTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATC 346 | || ||||||||||| ||| || | |||||||||||||||||||||| ||||||||||| Sbjct 217 AAGAAATCAAACAAGTCCTT-AGGAGAATCCCAATTCATCCACGTGTCATCCCTGCCATC 275 Query 347 AAATCTGCACATGATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTC 406 |||||||| |||| ||||||||||||||| |||||||||||||| ||||||| ||| ||| Sbjct 276 AAATCTGCTCATGCTTTAGGGTGTGAGCTGAGGATAGTGAGCGACGCAAACACGTTATTC 335 Query 407 ATCGAGACCATCGTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAAC 466 ||||| || ||| |||||||||| || ||||| || | ||||| ||||| ||| | || Sbjct 336 ATCGAAACGATCATTGAACATCTTGGGATTAGAGAGTTTTTCTCCGAGATTAACACAAAT 395 Query 467 CCAGGA-TATGTCGATGAACGTGGCACATTGAA-AATCTCTCCCTACCACGACTTCACTA 524 |||||| | ||| ||||||| || | ||| || | ||||||| ||||| |||||||| | Sbjct 396 CCAGGACT-TGTAGATGAACAAGGAAGATT-AATAGTCTCTCCTTACCATGACTTCACCA 453 Query 525 AATCCCCTCATAGCTGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCA 584 |||| ||||| | ||||| | | |||||||||||||||||||||||||||||| | Sbjct 454 AATCTTCTCATGGTTGCTC---T--C-GTTGCCCTCCTAACATGTGCAAGGGTTTGATAA 507 Query 585 TTGAGAGGATTCAA-CAATCTTT-AGCTAAAGAAGGGAAGAAGA--AA-ATGATCTATCT 639 | || ||||||||| | ||| | | | |||||||||| ||||| || ||||| ||||| Sbjct 508 TCGAAAGGATTCAAGCT-TCTCTGACC-AAAGAAGGGAGGAAGACCAATATGATATATCT 565 Query 640 AGGAGATGGAGCTGGCGATTACTGTCCAAGT-TTGAAACT-AAACACTGAAGATTACGTG 697 |||||||| ||||| ||||||||||||||| ||| | || ||| ||||||||||| || Sbjct 566 TGGAGATGGTGCTGGTGATTACTGTCCAAGTCTTGGA-CTCAAAG-CTGAAGATTACATG 623 Query 698 ATGCCACGTAAGAATTTCCCTGTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAA 757 |||||| | ||||||||||| || |||||| | |||||||||||||| ||| || |||| Sbjct 624 ATGCCAAGGAAGAATTTCCCGGTTTGGGATTTGATTAGTCAAAATCCCATGTTGGTTAAG 683 Query 758 GC-AGCGATTAGAGAATGGACCGATGGCCAA-AGCATGGAGATGATATTGATAGGAA 812 || | || ||||||| ||||||||||| || | ||||||| |||| | || |||| Sbjct 684 GCTACCG-TTAGAGATTGGACCGATGGAGAAGAT-ATGGAGAGGATACTAAT-GGAA 737 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43726985799 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5