BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73060.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926675 jgi|Araly1|926675|scaffold_202236.1 2106 0.0
Ahg932971 jgi|Araly1|932971|scaffold_400959.1 97.1 3e-19
> Ahg926675 jgi|Araly1|926675|scaffold_202236.1
Length=1256
Score = 2106 bits (1140), Expect = 0.0
Identities = 1205/1237 (97%), Gaps = 1/1237 (0%)
Strand=Plus/Plus
Query 64 ATGGCGATTGCGATGTTACCGGCGCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 123
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGATGGCGATGTTACCGGCTCTCTTCTCTTCTCCTTCGATTCTAACCAGCAGAATC 80
Query 124 AGATGCGGAGCCACCGCAAACAGCGGCGGCGCAATCTCATCTACTTCTTCTAATTCCGAT 183
|||||||||||||| || ||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 81 AGATGCGGAGCCACAGCTAACAGCGGCGGCGCACTCTCATCTACTTCTTCTGACTCCGAT 140
Query 184 CCTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CTTAGGAGAGGTGTTCCCTTGTATAAGCCCAAATCATACGAGGTTCTAGCCACTGACGCC 200
Query 244 GCCAATTCTCTAGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATCGATTTTCCA 303
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 201 GCCAATTCTCTTGCTTTCGCTCTCCAGGATTCAAAATCTCGTTTGGAAATTGATTTTCCA 260
Query 304 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCTTCAGACGACTTTATTGATGCTAAT 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 CCTTTACCCAGTAGCATTTCTTCTTACAAGGGTTCGTCAGACGACTTTATTGATGCTAAT 320
Query 364 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATCGAGACCAGAGCATGC 423
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 321 ATACAACTGGCCGTGACTGTTGTTCGCAAACTTCAGGAGAAAATTGAGACAAGAGCTTGC 380
Query 424 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATTGTTTTTCCTGACAAGCCTGAGAAGCGCAGGGCTTCGCAACGCTTCAAAGCGGCATTT 440
Query 484 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTACTTCTGTCACC 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 441 GATTCGGTTGATGGCATAAGTATTGGCTCTCTAGATGATATACCTGGTAGTTCTGTCACC 500
Query 544 AATTTCTTTAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AATTTCTTCAGGTCCATAAGGAGTACCCTGGACTTTGATTTTGAAGATGAAAACGAAGGA 560
Query 604 ACTTGGGAGCCCAAGGAGCCACCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACTTGGGAGCCCAAGGAGCCTCCGACCCTTTATATATTTATCAATTGCAGCACTCGGGAA 620
Query 664 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTCTCTTTCATAGAGAAGTTTGTGGAAACCTTTGCCAGTTCAACCCCAGCTCTTCTGTTC 680
Query 724 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTTCCCCCTAAAGAT 783
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 681 AATCTTGAGCTAGATACTTTGCGTGCTGACCTAGGGCTTCTTGGCTTCCCCCCTAAAGAT 740
Query 784 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGCACTACCGGTTTCTTTCTCAATTTATTCCCGTCTTTTATATCCGAACCAGAGAGTAT 800
Query 844 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTGAACTACAACGGAGCACTTTTTCGACAA 903
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 801 TCAAAGACAGTGGCAGTGGCACCATTTGTGTTAAACTACAACGGAGCACTTTTCCGACAA 860
Query 904 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATTTGCGTGTGTTGCA 963
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 861 TATCCTGGGCCATGGCAGGTGATGCTTAAGCAAACTGATGGTTCATATGCGTGTGTTGCA 920
Query 964 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTACAGGTTCTGGGA 1023
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 921 GAAAGCCCTACTCGTTTCACGCTGGGTGAAACGAAGGAAGAGCTGTTGCAGGTTCTGGGA 980
Query 1024 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTACAAGAAGAGAAAGGAAGCTCACTCGAGTTCCTGCGCAGGGGATACAAGTCGGCAACT 1040
Query 1084 TGGTGGGAAGAGGATGTGGAGCTCGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1143
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1041 TGGTGGGAAGAGGATGTGGAGCTTGAGGCATCATCTAATTGGCGTAACTGAACGATGGCC 1100
Query 1144 AAGTCATGGATTCACACTTTTGGTAAGTTTGTTAAGTCTCTCAAGATTGAGATATTTACA 1203
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 1101 AAGTCATGGATTCACACTTTTGGTATGTTTGTTAAGTCCCTCAAGATCGAGATATTTACA 1160
Query 1204 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATTAAGG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1161 CTTGTATATGTGCAAAGTTGGTAGAGAGAGTTTGGGAGATGTTAATGGGAATGATAAAGG 1220
Query 1264 ATAGTTTCAATATGTTTTCTATATATAACTCAGTCCA 1300
||||||| || ||| | |||||||| |||||||||||
Sbjct 1221 ATAGTTTGAAAATGATGTCTATATA-AACTCAGTCCA 1256
> Ahg932971 jgi|Araly1|932971|scaffold_400959.1
Length=1802
Score = 97.1 bits (52), Expect = 3e-19
Identities = 61/65 (94%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 847 AAGACAGTGGCAGTGGCACCATTTGTGTTGAACTACAACGGAGCACT-TTTTCGACAATA 905
||||||||||||||||||||||||||||| |||||||| |||||| | ||||||||||||
Sbjct 75 AAGACAGTGGCAGTGGCACCATTTGTGTTAAACTACAATGGAGCA-TGTTTTCGACAATA 133
Query 906 TCCTG 910
|||||
Sbjct 134 TCCTG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5