BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73110.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476441 jgi|Araly1|476441|fgenesh2_kg.2__1571__AT1G73110.1 2211 0.0
> Ahg476441 jgi|Araly1|476441|fgenesh2_kg.2__1571__AT1G73110.1
Length=1461
Score = 2211 bits (1197), Expect = 0.0
Identities = 1342/1410 (95%), Gaps = 17/1410 (1%)
Strand=Plus/Plus
Query 127 TACCAGAAAACTCTCTTCAATCGTTTGCTCGAAACCCTCCTCTAATGACGGCGGCAAAGT 186
||| ||||||| |||||| ||||||||||| ||| || | |||| |||||||||
Sbjct 66 TACAAGAAAACCCTCTTCGATCGTTTGCTCCAAA----CC-C----GACGTCGGCAAAGT 116
Query 187 GGCTAATGACGATGGTGGCGCAAAGCCGCGGAAGAAGTTGTCGGAGCAATCGTCATGGGA 246
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 117 GGCTAATGACGACGGTGGCACAAAGCCGCGGAAGAAGTTATCGGAGCAATCTTCATGGGA 176
Query 247 AGTTAAAGATTCAGAAGGGAAGGATTATCTCTATAGGCTTGGCGCGGAATCGGATAATGT 306
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 177 AGTTAAAGATTCGGAAGGGAAGGATTATCTCTATAGGCTTGGCGCGGAGTCTGATAATGT 236
Query 307 TAACATAGCCGTTGGGGCACGAAGCGGCATGATCGATGATGTATTCATTGGAGACTTCCT 366
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 237 TAACATAGCCGTTGGGGCACGTAGCGGCATGATCGATGACGTTTTCATTGGAGACTTCCT 296
Query 367 TGGAAAAGATTCTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACA 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 TGGAAAAGATTCTGATATTGTGTTTGATTACCGTCAGAAGGCGACAAGGTCCTTTGAACA 356
Query 427 TCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGGATAAAGTTGCGGTCCACATTGT 486
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TCTTCAAGGGGATTATTACATTGCTCCATCGTTTCTGGATAAAGTTGCGGTGCACATTGT 416
Query 487 GAAGAACTACCTTGCTCCTTCTCTAAATATAAAAATCCCATTGATTTTAGGTATATGGGG 546
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 417 GAAGAACTACCTTGCTCCTTCTCTAAATATAAAAATCCCATTGATCTTAGGTATCTGGGG 476
Query 547 AGGTAAAGGACAAGGCAAAACATTTCAGACTGAACTTATATTCAAAACAATGGGAGTTGA 606
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 477 AGGTAAAGGACAAGGCAAAACGTTTCAGACCGAACTTATTTTCAAAACAATGGGAGTTGA 536
Query 607 ACCAGTTATAATGTCTGCAGGAGAGTTGGAATCTGATAGAGCTGGTGAACCGGGGAGACT 666
||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 537 ACCGGTTATAATGTCTGCAGGGGAGTTGGAATCTGATAGAGCTGGGGAACCGGGAAGACT 596
Query 667 CATACGTGACCGCTATCGAACAGCTTCACAAGTCATTCAGAATCAAGGAAAGATGAGTGT 726
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 CATACGTGACCGCTATCGAACAGCTTCACAAGTCATTCAGAATCAAGGGAAGATGAGTGT 656
Query 727 TCTCATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGGGGAAACGCAAATGACAGT 786
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCTCATGATCAATGATATCGATGCTGGCCTTGGTAGATTTGGGGAAACGCAAATGACAGT 716
Query 787 AAACAACCAGATAGTTGTTGGTACCCTGATGAATCTTGCGGATAATCCTACAAGGGTAAG 846
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 AAACAACCAGATAGTTGTTGGTACTCTGATGAATCTTGCGGATAATCCTACAAGGGTAAG 776
Query 847 TGTAGGACAAGAATGGAGAGAAGCTGACATGGTAAACAGAGTTCCTCTAATTGTCACAGG 906
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 777 TGTGGGGCAAGAATGGAGAGAAGCTGACATTGTAAACAGAGTTCCTCTTATTGTCACAGG 836
Query 907 GAACGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTA 966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAATGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTA 896
Query 967 CTGGCAGCCAACTCGTGAAGATATCGTAAACATTGTTAGCAGAATGTACGAGAAAGATGG 1026
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 897 CTGGCAGCCAACTCGTGAAGATATCGTGAACATTGTTAGCAGAATGTACGAGAAAGACGG 956
Query 1027 TATATCGCGGAAAGATGTTATAAGCATTGTAGATAAGTTTCCAAATCAAGCACTTGACTT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TATATCGCGGAAAGATGTTATAAGCATTGTAGATAAGTTTCCAAATCAAGCACTTGACTT 1016
Query 1087 CTATGGAGCTTTGAGGTCACGCACATATGATAGGTCTATCCTCAAGTGGGTAGATGAAGC 1146
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 CTATGGAGCTCTGAGGTCACGCACATATGATAGATCTATCCTCAAGTGGGTAGATGAAGC 1076
Query 1147 TGGAGGAATGGAGACTCTAGGGAAAGTTCTTCTCAGACGTAAAAAGACCCAAGAGGTTCC 1206
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1077 TGGAGGAATGGAGACTCTAGGGAAAATTCTTCTCAGACGTAAAAAGACCAAAGAGGTTCC 1136
Query 1207 TCAATTCACTGCCCCTGAGCAAACGGTGGAAGCATTGCTGGAATCAGGGTACTCACTCAT 1266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCAATTCACTCCCCCTGAGCAAACGGTGGAAGCATTGCTGGAATCAGGGTACTCACTCAT 1196
Query 1267 AAATGAACAGAAACTTATTATGGAAACAAAGCTTTCCAAGGAGTACATGAAGAACATGGA 1326
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAATGAACAAAAACTTATTATGGAAACAAAGCTTTCCAAGGAGTACATGAAGAACATGGA 1256
Query 1327 CGATTGATACCAAACAAACATCAAtt-tttttCATTCTTAAAGTGACTTTCGAGGAACAC 1385
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1257 CGATTAATACCAAACAAACATCAATTCTTTTTCATTCTTATCGTGACTTTCGAGGAACAC 1316
Query 1386 TCAGCTGAATCCTGATAAGTTGTTACAAAAGCTTAAAAAGATTAACCGAATCACTCTAT- 1444
| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1317 TGAGCTGAATCCTGATAAGTTGTTACAAAAGCTTAAAAATAT-AACCGAATCACTCTATT 1375
Query 1445 AGAGTTTGTTTATACTAAAACCATGAGCATTTTGAACCTAAAGCCGATGTGGTGCTAATA 1504
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1376 AGAGTTTGTTTTTACTAAAACCATGAGCATT--GAACCTAAAGCCGATGTGGTGCCAATA 1433
Query 1505 CATAAACAATAT-ATTAGATGTGTATGCAT 1533
|| || |||| | |||||||||||||||||
Sbjct 1434 CAGAA-CAAT-TGATTAGATGTGTATGCAT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5