BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73170.1 Length=2076 Score E Sequences producing significant alignments: (Bits) Value Ahg316268 jgi|Araly1|316268|fgenesh1_pm.C_scaffold_2001301 3110 0.0 > Ahg316268 jgi|Araly1|316268|fgenesh1_pm.C_scaffold_2001301 Length=1986 Score = 3110 bits (1684), Expect = 0.0 Identities = 1906/2009 (95%), Gaps = 31/2009 (2%) Strand=Plus/Plus Query 15 ATGCTGAGCTTATCATTGAGTAATCATGTTCCTCCATTAACGCTCTTGAGCCATGAACGA 74 ||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGCTGAGCTTATCACTGAGTAATCATGTTCCTCCATTAACGCTCTTGCGTCATGAACGA 60 Query 75 A----GA--ATCCTCAAGCTCCAAAGTCGATCGTCTATTCTCTTTCACCAACTCTTCCAC 128 | || |||||||||||| | ||||||||||| ||||||||||||| ||||||||| Sbjct 61 AGCTTGAGCTTCCTCAAGCTCCGATGTCGATCGTCTCTTCTCTTTCACCACCTCTTCCAC 120 Query 129 ACTAAGTTCCTTCTCCTGTCGAATTCTTCCTCTTTGTCTTCTTCACATGGAGTTGTTGCT 188 ||||| |||| | | | ||| || || ||||||||||| ||||||||||||| Sbjct 121 ACTAAATTCC-T-T-C--TCG-----TT--TC---GTCTTCTTCACCTGGAGTTGTTGCT 165 Query 189 ATTTCGGCATCTCCGTCTTCAGTCGCAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 248 |||||||||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct 166 ATTTCGGCATCT---TCGTC--TC-CAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 219 Query 249 GACGAATTACGTCGTCTATTGGCGCTCGTACCGGAGGAGATACGCCAGACACTGA-AGGA 307 ||||||||||| ||||| ||||| || ||||||||||||||||||| |||||| | || | Sbjct 220 GACGAATTACGCCGTCTGTTGGCACTGGTACCGGAGGAGATACGCCGGACACT-AGAGAA 278 Query 308 GCACCCTGAAATTAGTGAACTCATAGAGATAGTGTTGGATTTAGGTCGTAAACCTCTGGC 367 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 279 GCACCCTGAAATTAGTGAACTCATAGAGGTAGTGTTGGATTTAGGTCGTAAACCTCTGGC 338 Query 368 GCGATTCCCTTCAGGTGACTTTGTTATCTCCGACGATGCTGTTAGAGTTAAAGATCTGGA 427 |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 339 GCGATTCCCTTCTGGTGATTTTGTTATCTCCGACGAAGCTGTTAGAGTTAAAGATCTGGA 398 Query 428 ATTCGCTGTTTCTCAGGTTGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 487 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 399 ATTCGCTGTTTCTCAGGTCGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 458 Query 488 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAAGGAGAAATTATTGGATTAACTTGCCG 547 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 459 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAGGGAGAAATTATTGGATTAACTTGCCG 518 Query 548 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 578 Query 608 CTCATTGTTGCTTATTGGTCCTCCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 667 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 579 CTCATTGTTGCTTATTGGTCCACCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 638 Query 668 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 698 Query 728 TGGTGGTGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 787 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 699 TGGTGGGGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 758 Query 788 TAACTCTGACATACAACACAAGGTGCTGATTGAGGCAGTAGAAAACCATATGCCCCAAGT 847 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 759 TAACTCTGACATACAACACAAGGTGCTGATAGAGGCAGTAGAAAACCATATGCCCCAAGT 818 Query 848 AATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACTATAGCAGA 907 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 819 GATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACAATAGCAGA 878 Query 908 ACGTGGAATCCAGTTAGTCGCCACTGCTCATGGAGCCACTATCGAGAATTTGATTAAGAA 967 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 879 ACGTGGAATCCAGTTAGTTGCCACTGCTCATGGAGCCACCATCGAGAATTTGATTAAGAA 938 Query 968 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTAACTCTTGGAGATGAGGAAGC 1027 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 939 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTGACTCTTGGAGATGAGGAAGC 998 Query 1028 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTTCAACATTTAACTG 1087 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 999 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTCCAACATTTAACTG 1058 Query 1088 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATCGTAGTCTTGAAGCAACTGT 1147 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1059 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATTGTAGTCTTGAAGCAACTGT 1118 Query 1148 TGATGCTATCCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1207 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 TGATGCTGTTCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1178 Query 1208 AGTGGAAGTGATTATGGAGAAGGAACCTTTCATCGACGAGAAGACTGTGGATAAGAAACA 1267 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1179 AGTGGAAGTGATTATGGAAAAGGAACCTTTCATCGACGAGACGACTGTGGATAAGAAACA 1238 Query 1268 TGAAGAGGAAACATTAGATGTTTCGAAGCTCACCAAGGAGGAAACTGTCTCTGAAGTCCT 1327 ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || Sbjct 1239 TGAAGAGGAAACATTAGATGTTTCGAAGCTCGCCAAGGAGGAAACTATCTCTGAAGTTCT 1298 Query 1328 TCAAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGAAAGATACATTGATGTATCTATA 1387 || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1299 TCCAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGCAAGAGACATTGATGTATCTATA 1358 Query 1388 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATCAAACAACTAGAGATGGAAAC 1447 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1359 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATAAAACAACTGGAGATGGAAAC 1418 Query 1448 TGCGGTAGAGTTAACTGACGACATTAGTGAAGCAGAAGCCTTACTCGCGTTGCAAGCAAA 1507 ||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| || Sbjct 1419 TGCAGTAGAGTTAACTGACGACATTAGCGAAGCAGAAGCCTTACTTGCATTGCAAGCGAA 1478 Query 1508 GATCAGGAAGAATCCCCGGATTAAATCATTTGCTACATCTCACGGTATACCTGTTTATGT 1567 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1479 GATCAGGAAGAATCCCCGGATTAAATCATTAGCTACATCTCACGGTATACCTGTTTATGT 1538 Query 1568 AACAAAGACTAACTCAGGTATCCAAGTGGCCAAGGCGATACGGGCATTACTAACAGATTA 1627 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 1539 AACAAAGACTAACTCAGGTATTCAAGTGGCCAAGGCGATACGGGCATTGCTAACCGATTA 1598 Query 1628 CGAAGACGGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1687 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 CGAAGACAGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1658 Query 1688 CGCCTTAGAAGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAGGAAACAAC 1747 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1659 CGCCTTAGAGGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAAGAAACAGC 1718 Query 1748 CGATTTACTCCCGAGGCCACCTAGGATTGTGTCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1807 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1719 CGATTTACTCCCGAGGCCACCTAGGATTGTATCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1778 Query 1808 TAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTACGGATTCTCCCTTA 1867 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1779 CAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTAAGGATCCTCCCTTA 1838 Query 1868 TAGCACGGAAGAAGATAGAGACGACCGTGAAGATGAAGGAGAGTTTGGAGAAGCGAACGG 1927 | | ||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1839 TGGGACGGAAGAAGACAGAGACGATGGTGAAGATGAAGGAGAGTTTGAAGAAGAGAACGG 1898 Query 1928 GGAAGAGCTTGACGAGTTAGGTT-TCGCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1986 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 1899 GGAAGAGCTTGACGAGTTCGGTTGT-GCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1957 Query 1987 TCGATAGGTTACCTCTATTGCCTGATTAG 2015 ||||||||||||| ||||||||||| ||| Sbjct 1958 TCGATAGGTTACCCCTATTGCCTGACTAG 1986 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78085002250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5