BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73220.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476454 jgi|Araly1|476454|fgenesh2_kg.2__1584__AT1G73220.1 2761 0.0
> Ahg476454 jgi|Araly1|476454|fgenesh2_kg.2__1584__AT1G73220.1
Length=1733
Score = 2761 bits (1495), Expect = 0.0
Identities = 1655/1734 (95%), Gaps = 3/1734 (0%)
Strand=Plus/Plus
Query 8 GACCATGTGTATATATACCATCGCTAACTTAAGACATATATCAATCAATCCCACAAACCT 67
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 GACCATGTGTATATATACCCTCGCTAACTTAAGACATATATCAATCAAGCCCACAAGCCT 60
Query 68 AAATTGAAAACAAATATATTTCCACCTGAAACAACATAAACAGAA-TGGAACCTTCAAAA 126
|||| |||||||| ||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 61 -AATTTAAAACAAAAATATTTCTACCTGAAACAACATAAACA-AACTGGAACCTTCAAAA 118
Query 127 CAAGAAGTTCCAAAGCTCATGGAGACACCACCGAACATATCAAACGATTCATCAGCAACC 186
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||
Sbjct 119 CAAGAAGTTCCAAAGCTCATGGAGACACCACCAAACATATCCAATGATTCATCAGCATCC 178
Query 187 GAGAAAGGAGAAGCAACAAGGCAACAACAGCTACCAAACAATAGGTACGCACTCACAGTT 246
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 179 GAGAAAGGAGAAGCAACAAGGCAACAACAACAACCAAACAATAGGTACGCACTCACAGTT 238
Query 247 GACGAGGTGATCGAGCAACACATTGGAGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GACGAGGTGATCGAGCAACACATTGGCGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 298
Query 307 TTGGTCTCTATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAT 366
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTAGTCTCCATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAC 358
Query 367 GCTCAGCCCGCGGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGTGCCTCCTTGTGT 426
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 359 GCTCAGCCCGCTGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGCGCGTCGTTGTGT 418
Query 427 GGATTGGCCAGTGGAGAATGGGAATGGATTGGACCAAAGAGTGACACTGTTGTTTCTGAG 486
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 GGCTTGGCCAGTGGAGAATGGGAATGGATTGGATCAAAGAGTGACACTGTTGTTTCTGAG 478
Query 487 TGGAATCTCATATGTCAACATAAATTTCTTGTGGCTGTTCCTTCCACACTATTCTTCATC 546
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 479 TGGAATCTCATATGTCAACATAAGTTTCTTGTTGCTGTTCCTTCCACTCTATTCTTCATC 538
Query 547 GGATCTCTTTTCGGTTCTGGTGTGTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAG 606
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 GGATCTCTTTTCGGTTCTGGTGTTTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAA 598
Query 607 AAGACTTTATTACTCTCTTGTGTATTAACTTTCGTCACGGCCTTTGCGATCTCTTTTTCA 666
|||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 599 AAGACTCTGTTACTCTCTTGTGTATTAACTTTTGTCACGGCCTTCGCGATCTCTTTTTCA 658
Query 667 CCAAACGTTTGGGTTTATGCATTCTTGCGTTTTGCCAACGGTTTCTTTAGATCAGGAATT 726
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 CCAAACGTATGGGTTTACGCATTCTTGCGTTTTGCCAATGGTTTCTTTAGATCAGGAATT 718
Query 727 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 778
Query 787 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTACCACTCATGGCTTAC 846
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTGCCACTCATGGCTTAT 838
Query 847 TTGGAGAGAAAGTCCTGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 906
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGGAGAGAAAGTCATGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 898
Query 907 GCGGTTTGTCTCCTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 966
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCGGTTTGTCTCTTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 958
Query 967 AATAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTCAACGGGAAACAACTTCCG 1026
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AACAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTTAACGGGAAACAACTTCCG 1018
Query 1027 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCATCGGAG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCAGCGGAG 1078
Query 1087 AAGTTTTGGAAAACAAAATGGGCAGTGAAAAGAATCATAATGGTTATGATGGCTGGATTT 1146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 AAGTTTTGGAAAACAAAATGGGCAGTAAAAAGAATCATAATGGTTATGATGGCTGGATTT 1138
Query 1147 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1198
Query 1207 TACTTAACTGTTGCTGTTAACGCTCTGATGGAGTTTCCAGCGGTTTTCATCGGAAGCTTC 1266
|| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1199 TATTTAACCGTTGCTGTTAACGCACTGATGGAGTTTCCAGCGGTTTTCATAGGAAGTTTC 1258
Query 1267 CTCCTCGGGGTCATGAACCGCCGTCCACTATTCTCGAATTCATCATACCTCGCCGGATTC 1326
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1259 CTCCTCGGGGTCATGAACCGGCGTCCACTATTCTCGAACTCATCATACCTCGCTGGAGTC 1318
Query 1327 GCGTGTCTGCTCTGCGCGGTTCTCTCGATCCACCGCGTGATCCGTGCGATATCTGTGGCA 1386
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1319 GCGTGTCTACTCTGCGCGGTTCTCTCTATCCACCGCGTGATCCGTGCCATATCTGTTGCG 1378
Query 1387 AAATGGTTACAACTTGCAGTTGAGGCGGTTGGGTTCATGGCATCCTCGACAGCGTATGAC 1446
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1379 AAATGGTTACAACTTGCAGTTGAGGCAGTTGGATTCATGGCATCCTCGACAGCGTATGAC 1438
Query 1447 GTCCTATATGTCTACTGCGTAGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCA 1506
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GTCCTATATGTCTACTGTGTCGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCG 1498
Query 1507 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCTGCAGCACCACTGCTAGTTGCGTTAGGA 1566
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1499 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCCGCAGCACCGCTGCTAGTTGCGTTGGGA 1558
Query 1567 AGGGAAAGCGCAATGATGTCGTTCATCGTGTTTGGTGTTGCATCAGTGCTGAGCGGCATC 1626
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 1559 AGGGAAAGTGCAATGATGTCGTTTATCGTGTTTGGTGTTGCATCTGTGCTGAGCGGCGTC 1618
Query 1627 GTGAGTCTCTGGCTACGAGAAACTCGAAACGCTCCGCTTTACGAAACACTAGCACAACAG 1686
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 1619 ATGAGTCTCTGGCTACGAGAAACACGAAATGCACCGCTTTACGAAACACTAGCACAGCAG 1678
Query 1687 GGGAAAGCGGAAGAGATCGAAAACGAAACAATCATGATTACTTGATTGCATTCA 1740
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 1679 GGGAAAGCGGAAGAGATCGAAAATGAAACAATCCTGAGTACTTGATTGCATTCA 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5