BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73325.1 Length=669 Score E Sequences producing significant alignments: (Bits) Value Ahg926704 jgi|Araly1|926704|scaffold_202265.1 998 0.0 > Ahg926704 jgi|Araly1|926704|scaffold_202265.1 Length=709 Score = 998 bits (540), Expect = 0.0 Identities = 622/663 (94%), Gaps = 0/663 (0%) Strand=Plus/Plus Query 1 ATGGAGAAGCTTACTTTGTCTTTCATCACTCTCACCGTTCTCTCAGCCATCTTCACCGCA 60 ||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || ||| Sbjct 21 ATGAAGAAGCTTACTTTGTCTTTCATCACTCTCACAGTTCTCTCAGCCCTCTTGACAGCA 80 Query 61 GCTTCAGCGGCCGATGCTACACCAAGCCAAGTAGTCCTAGACATAGCTGGACATCCGGTT 120 |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct 81 GCTTCAGCGGCCGATGCTGTACCAAGCCAAGTAGTCCTGGACACAGCTGGACATCCGGTT 140 Query 121 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 200 Query 181 CCTTCAAACCGAAATTTAAGCACACAAGACTTGTGTCTGAATCTTGACATTGTCCAATCA 240 ||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 201 CCTTCGAACCGAAACTTAAACACACAAGACTTGTGTCTGAATCTCGACATTGTCCAATCA 260 Query 241 TCATCTCCTTTCGTCTCAGGCCTTCCCGTAACATTCTCCCCACTAAACACCAAAGTCAAG 300 |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||| Sbjct 261 TCATCTCCATTCGTCTCAGGCCTTCCCGTAACTTTCTCCCCACTCAACACTAAAACCAAG 320 Query 301 CATGTTCAGCTCTCAGCTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGCCCT 360 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 321 CATGTCCAGCTCTCAACTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGTCCT 380 Query 361 GACTCCAAAGTGTGGAGAATCGACCACTCTGTACAACTAAGAAAGAGCTTTGTAAGCATT 420 || ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 381 GAATCCAAGGTCTGGAGAATCGACCACTCTGTACAACTAAGGAAGAGCTTTGTAAGCACT 440 Query 421 GGTGGTCAGAAAGGTAAGGGTAATAGTTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 480 |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 441 GGTGGTGAGAAAGGTAAAGGTAATAGCTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 500 Query 481 AAGCTTATGTATTGTCCTATTAGCTCCATTGTTGCGTGTATTAATGTGAGTTTGGAGATT 540 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| | Sbjct 501 AAGCTTATGTATTGTCCGATTAGCTCCACTATTGCGTGTATTAATGTGAGTTTGGAGACT 560 Query 541 GATGATCATGGAGTTCGACGTTTGGTTCTTAGCACTGATCAGTCTTTCGTTGTTAAGTTT 600 ||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 561 GATAATCTTGGAGTTCGACGTTTGGTTCTTAGCACTGATCAATCTTTCGCTGTTAAGTTT 620 Query 601 CAGAAGGCTTATGATTCAAACTCCAACTGTAATCTTAAGTCTAACTCGAGAATGTTCCTT 660 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | Sbjct 621 CAGAAGGCTTATGATTCAAACTCCAACTGTCATCTTAAGTCTAACTCGAGGATGTTCCCT 680 Query 661 TTT 663 ||| Sbjct 681 TTT 683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24551158548 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5