BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73330.1 Length=1000 Score E Sequences producing significant alignments: (Bits) Value Ahg926705 jgi|Araly1|926705|scaffold_202266.1 931 0.0 > Ahg926705 jgi|Araly1|926705|scaffold_202266.1 Length=670 Score = 931 bits (504), Expect = 0.0 Identities = 612/664 (92%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 58 GAAACAATCATGAAGGCCACCATATCCATCACTACCATCTTTCTCGTGGTCGCTTTGGCC 117 ||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 12 GAAACAACCATGAAGGCTACCGTATCCATCACTGTCATCTTTCTCGTGGTCGCTTTGGCC 71 Query 118 GCACCCTCCCTAGCTCGTCCTGACAACCATGTCGAGGACTCTGTAGGCCGTCTACTTCGT 177 |||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||| Sbjct 72 GCACCCTCTCTAGCTCGTCCAGACAATCATGTCGAGGACTCTGTAGGCCGTTTACTTCGT 131 Query 178 CCTGGTCAAACGTACCACATCGTACCTGCGAA-TCCCGAGACAGGAGGAGGTATTTTCTC 236 ||||||||||| || |||||||||||||| || ||| |||| |||||||||| ||||||| Sbjct 132 CCTGGTCAAACCTATCACATCGTACCTGC-AACTCCTGAGAGAGGAGGAGGTCTTTTCTC 190 Query 237 GAACAGTGAAGAAATCTGTCCTCTTGACATCTTCCAGTCAAACAATC-CGCTTGACTTGG 295 |||||||||||| ||||||||||| |||||| ||||||||||| ||| | |||||||||| Sbjct 191 GAACAGTGAAGAGATCTGTCCTCTCGACATCCTCCAGTCAAACGATCTC-CTTGACTTGG 249 Query 296 GCCTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAGTATCACCA 355 || |||||||||||||||||||||||||||||||||||||||||||||||| | || ||| Sbjct 250 GCGTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAATGTCGCCA 309 Query 356 TCGAGTTTGAGGCTCCGAACTGGTTTTTGTGTCCTAAAGAATCCAAGGGGTGGAGAGTTG 415 | ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| | Sbjct 310 TAGAGTTCGAGGCTCCCAACTGGTTTTTGTGTCCTGAAGAATCCAAGGGGTGGAGAGTCG 369 Query 416 TGTACTCTGAAGAATTCAAAAAGAGTCTTATAATAAGCACTGGTGGTTCATCAAACCCAA 475 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 370 TGTACTCTGAAGAATACAAAAAGAGTCTTATAATAAGCACTGGTGTTTCATCAAACCCAA 429 Query 476 GTGGCTTCCAGATCCATCGAGTCGACGGAGGTGCTTACAAGATTGTATATTGTACAAACA 535 |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| | || Sbjct 430 GTGGCTTCCAGATCCATCGAGTTGACGGAGGTTTTTACAAGATTGTGTATTGTACGACCA 489 Query 536 TCTCGACTACTACGTGCATGAACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 595 | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 490 TATCTCCTACTACGTGCATGGACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 549 Query 596 TAGCCTTGACCAGCGATGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAG 655 |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TAGCCTTGACCAACGACGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAC 609 Query 656 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTGATTCACAACTCTTGTACCAA 715 ||||||||||||||||||||||||||||||||||||||| | | |||||| | ||||||| Sbjct 610 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTAACTAACAACT-T-GTACCAA 667 Query 716 GAAA 719 ||| Sbjct 668 -AAA 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37169844075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5