BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73390.1
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926713 jgi|Araly1|926713|scaffold_202274.1 2109 0.0
Ahg920718 jgi|Araly1|920718|scaffold_101999.1 1380 0.0
> Ahg926713 jgi|Araly1|926713|scaffold_202274.1
Length=1315
Score = 2109 bits (1142), Expect = 0.0
Identities = 1252/1306 (96%), Gaps = 4/1306 (0%)
Strand=Plus/Plus
Query 34 TTCGTTAAGCTTTAGAAATGGGATGCTTTGCATCAAGGCCGAATGATACTGGTGGAAACA 93
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 4 TTCGTTAAGCTCTAGAAATGGGATGCTTTGCATCAAGGCCGAAGGACACTGGTGGAAACA 63
Query 94 GAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGATACCTA 153
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 64 GAAGAAAGCCAACGAGCATCGGGGATGTTTCTGTATACGTACCTGGTTTAAGGATACCCC 123
Query 154 AGCCCGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTGGAGCGCT 213
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 AGCCTGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTGGTGGAGCGCT 183
Query 214 TGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACTATAACAA 273
||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 184 TGACAGCTTTAAGAACGCGAATTGTTGTGATGGCAAATCAAGAAGGACCAACGATAACAA 243
Query 274 GAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCACGCTTTGG 333
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 244 GAACTAGGAGGAAGACACAGCATGGAGGTTCTACACTCGCAGATCTCCATCAAGCTTTGG 303
Query 334 AAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATTCAAAG 393
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 304 AAGATTATCTACCTGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATGCAAAG 363
Query 394 TACAGTTTAATTGGGTAAATCAGGAAGATGAAG-AAGAGGAAACAGCCATGTCAAATGTT 452
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||
Sbjct 364 TACAGTTTAATTGGGTAAATCAGGAAGATG-AGCAAGAGGAAACAGCCATATCAAACGTT 422
Query 453 TGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAAGCCAAT 512
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 423 TGGTATGAAATACTGTCGGTTTTGCATCTAATGGCAATGCTACAAATGTCACAAGCCAAT 482
Query 513 TTACTGCTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAAATATCAGAAGAAAAT 572
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 483 TTACTACTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAGATATCAGAAGAAAAT 542
Query 573 AGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGTGCTGTGAAG 632
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 543 AGGCGAGCTTCAATCGATATCTTCTTAAAGGCAGCTGGATACCTTGACTGTGCTGTGAAG 602
Query 633 CATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGACCTAGCAGAA 692
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 603 CATGTTCTTCCTCAGTTTTCAACCGAGCTGAGGAGAAGTTTACCAGTTGACCTAGCAGAA 662
Query 693 GGAGCTTTACGTGCACTTTGCTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 752
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGCGCTTTACGAGCACTTTGTTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGG 722
Query 753 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTTTCATGTGAAATG 812
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 723 ATGGCGATTGATAGTGCAAAAGCCACTCTTGCTGTGAAACGAAGACTTTCGTGTGAAATG 782
Query 813 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGG 842
Query 873 GGCGAAAAGCATA-TGCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 931
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGCGAAAAGCATAGT-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTA 901
Query 932 CTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACATGGCATGGCGGT 991
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 902 CTACTACCACGGTTTGATTCTTGATGAAGGAAACACCGAGAAATCACATGGCATGGCGGT 961
Query 992 TGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1051
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 962 TGCTGCTTTACAGGCTGCAGATGAGTGTTTCAAAGAAAGTAAGAAAGCAAGTGAGGCGTT 1021
Query 1052 TAACACCTCTTCACCCACGTCAAGGACTCCTTCACTTTTCGGGACAATGAAATATCTATC 1111
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 TAACACCTCTTCACCCACATCAAGGACTCCTCCACTTTTCGGGACAATGAAATATCTATC 1081
Query 1112 AGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTGATCTATACTCTTA 1171
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1082 AGAGAAAATACCGAAAGAAACTTCAAGTAAAGTCAGGATAAACCTTGATCTATACTCTTA 1141
Query 1172 TGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1231
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1142 TGAAAAGATCATGGAGACAGCACCGACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGA 1201
Query 1232 TGAGTACCAACTTCCTTCTGTTGATGCGTCATGGTCTGAAGCCAGTCTACGGACTAAAAA 1291
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1202 TGAGTACCAACTTCCTTCTGTCGATGCGTCATGGTCTGAAGCCAGTCTACAGACTAAAAA 1261
Query 1292 CACATCAAATCACATATAGGGCAACCAAAGATAGAGCAGTGAATAG 1337
||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1262 AACATCAAATCACATAAAGGGCAACCAACGATAGAGCAGTGAATAG 1307
> Ahg920718 jgi|Araly1|920718|scaffold_101999.1
Length=1259
Score = 1380 bits (747), Expect = 0.0
Identities = 1091/1256 (87%), Gaps = 27/1256 (2%)
Strand=Plus/Plus
Query 33 TTTCGTTAAGCT-T-TAG-AAATGGGATGCTTTGCATCAAGGCCGAATGA-TACTGGTGG 88
|||| ||||||| | | | ||||||||||||||||||||| ||||| || | |||||||
Sbjct 1 TTTC-TTAAGCTCTGTTGAAAATGGGATGCTTTGCATCAACACCGAAAGACT-CTGGTGG 58
Query 89 AAACAGAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGAT 148
|| |||||||||||||| |||||||| || |||||||| ||||||||||||||| ||||
Sbjct 59 GAATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGAT 118
Query 149 ACCTA-AGCCCGTGGAGTTTTCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTG 206
||| | || | ||||| |||| | |||||||| ||||||||||| || ||||||||||||
Sbjct 119 ACCGAGAG-CGGTGGA-TTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTG 176
Query 207 GAGCGCTTGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACT 266
|| ||||||||||||||||||||| | ||||| |||||||| || ||||||||||| ||
Sbjct 177 GAACGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACA 236
Query 267 ATAACAAGAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCAC 326
|| || ||||| ||||| |||||||| ||||||||||| |||||| |||||||||||
Sbjct 237 ATTACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAA 296
Query 327 GCTTTGGAAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAA 386
|||||| ||||||| |||| ||| |||| |||||||||||||||||||||||| ||||
Sbjct 297 GCTTTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAG 356
Query 387 TTCAAAGTACAGTTTAATTGGGTAAATCAGGAAGATGAAGAAGAGGAAACAGCCATGTCA 446
|| |||||||| |||||||||||||||||||| || || ||||||||||||| ||||||
Sbjct 357 TTTAAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCA 416
Query 447 AATGTTTGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAA 506
|| |||||||||||| | || || ||||||||||||||||||||| |||||||||| |||
Sbjct 417 AACGTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAA 476
Query 507 GCCAATTTACTGCTTCTTCCTAGAGGTTCCAGTGATGG---CTATCATCCAAAAATATCA 563
||||||||||||||||||||||||||||| ||||| || | | ||||| ||| ||||
Sbjct 477 GCCAATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCC 536
Query 564 GAAGAAAATAGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGT 623
|||||||| || ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct 537 GAAGAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGT 596
Query 624 GCTGTGAAGCATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGAC 683
|| || ||||||||||| ||||| ||||| | ||||| |||||||||||||| |||||
Sbjct 597 GCCGTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGAC 656
Query 684 CTAGCAGAAGGAGCTT-TACGTGCACTTTGCTTGCAAGCA-TTAGGCCAGGGTGTTGATA 741
|||| ||||| | || |||| || ||||||||||||||| || ||||||||||||||||
Sbjct 657 TTAGCGGAAGG-GGTTCTACGGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATA 714
Query 742 TCCAACTTGGGATGGCGATTGATAG-TGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTT 800
|||||||||| |||||||||||||| | |||| ||||||||||| || || |||||||||
Sbjct 715 TCCAACTTGGCATGGCGATTGATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTT 773
Query 801 TCATGTGAAATGGTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTA 860
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 774 TCATGTGAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTA 833
Query 861 GCAAACGGGTGGGGCGAAAAGCATATG-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA 919
||||| || ||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 834 GCAAATGGTTGGGGAGAAAAGCAT-GGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA 892
Query 920 GGCTGCAGCTTACTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACA 979
|||||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||||
Sbjct 893 GGCTGCGGCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACA 952
Query 980 TGGCATGGCGGTTGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGC 1039
||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 953 TGGCATGGCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGC 1012
Query 1040 AAGTGAGGCGTTTAACACCTCTTCACCCACGTCAAGGACTCCTTCACT-TTTCGGGACAA 1098
| ||| || |||||| |||||||||| || |||||||| || | || ||| || ||||
Sbjct 1013 ATCTGAAGCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTT-GGAACAA 1071
Query 1099 TGAAATATCTATCAGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTG 1158
|||| |||||| | |||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 1072 TGAAGTATCTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTG 1131
Query 1159 ATCTATACTCTTATGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGG 1218
||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct 1132 ATCTATACTCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGG 1191
Query 1219 CATTGAAACCCGATGAGTACCAACTTCCT-TCTGTTGATGCGTCA-TGGTCTGAAG 1272
|||||||||| |||||||| ||||||||| || || || || | | | ||||||||
Sbjct 1192 CATTGAAACCAGATGAGTATCAACTTCCTCTC-GTCGAAGCTT-AGTAGTCTGAAG 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5