BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73470.3
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926719 jgi|Araly1|926719|scaffold_202280.1 1677 0.0
> Ahg926719 jgi|Araly1|926719|scaffold_202280.1
Length=1097
Score = 1677 bits (908), Expect = 0.0
Identities = 1047/1110 (94%), Gaps = 25/1110 (2%)
Strand=Plus/Plus
Query 47 GTGACTGATTCAGATGACCAGTGTCTCCGTCGCCGTCGTAGCTCCTCCGCATCGTTGCCC 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GTGACTGATTCAGATGACCAGTGTCTCCGTCGCCGTCGTAGCTCCTCCGCATCGTTGCCC 68
Query 107 ATTCTCTAGTCATCTGAATCTGAACAAGCTTTCTCTTCAAATTCCTAGAACCGGCTGGCG 166
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 69 ATTCTCTCGTCATCTGAGTCTGACCAAGCTTTCTCTTCAAATTCCTAGAACCGGCTGGCG 128
Query 167 GAGGAAACAGCTAGGGTTTGCTTTAGCTTCTA-CTGCGGCTTCAGAATCGCCATCGGAAG 225
|||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 129 GAGGAAACAGATAGGGTTTGCTTTAGCTTC-AGCTGCGGCTTCAGAATCGCCATCGCAAG 187
Query 226 CTACATATGATCCGGAGCTCCGTTTAGTTTTCGAGCTCGCTACCGATTCCGAGTTATATG 285
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 188 CTACCTATGATCCGGAGCTCCGTTTAGTTTTCGAACTCGCTACCGATTCTGAGTTGTATG 247
Query 286 AGCTTGAGAAAATCCTTTTTGGTCCCAGCTACTTCAGCCCTTTGCTGAAATCAATCCCAA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AGCTTGAGAAAATCCTTTTTGGTCCCAGCTACTTCAGCCCTTTGCTGAAATCAATCCCAA 307
Query 346 ACAAAGGAGGAGGTGACCGGCTTATGATAGGCCAAGACATTGAAGTGCGAGATGGTTTTA 405
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 308 ACAAAGGAGGAGGTGACCGGCTAATGATAGGCCAAGACATTCAAGTGCGAGATGGTTATA 367
Query 406 TCGAAGCTCTTGAATCGAGATTCTTGTTTCTAGCTGCAGATGCTCGTTCAACACTCAGGG 465
| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 368 TTGAAGCTCTTGAATCGAGATTCTTGTTTCTCGCTGCAGATGCACGCTCAACACTCAGGG 427
Query 466 GTTGGAGGCCTTCATACAGAAACGTTTTACTTGCGGTGAGAAATAATTTGAATATTCCCT 525
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 428 GTTGGAGGCCTTCATACAAAAACGTTTTACTTGCGGTGATAAATAATTTTAATATTCCCT 487
Query 526 GCTCCAGCCAATTGCCAACCGAAGACCTAGAAGCAGAGATTTTTCTTTATCTTGTCGACA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GCTCCAGCCAATTGCCAACCGAAGACCTAGAAGCAGAGATTTTTCTTTATCTTGTCGACA 547
Query 586 ATTTCTCGAGTGAAGCATCAGGGGTTTTTCCAGGCATGTGGGAAAATTCTGAAGTCTCAG 645
||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 548 ATTTCTCGAGTGAAGCATCCGGGGTTTTTCCAGGCTTGTGGGAGAATTCTGAAGTCTCAG 607
Query 646 AGGCAGAGGGAAGCTTAGAACTCGGGCTCAGTAAATGGAAAGTTGAACTACTTGCCGCAC 705
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 608 AGGCAAAGGGAAGCTTAGAACTCGGGCTCAGTAAATGGAAAGTTGAACTACTTGCTGCAC 667
Query 706 TACAAGTGGGTGCTACAGAGGTCCAATCTATGATTCTGAAGGGTGGTGGCATGATCACAT 765
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 668 TACAAGTTGGTGCTACAGAGGTCCAATCTATGATTCTGAAGGGTGGCGGCATGATCACAT 727
Query 766 TCGCCAAAGTTTATCAGTTGTTGGCTAAGAAACTATCTGG-AAAAGTATTCCTTGAAGCT 824
| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 728 TTGCCAAAGTTTATCAGTTGTTGGCTAAGAAACTAT-TGGGAAAAGTATTCCTTGAAGCT 786
Query 825 GCCAACTACCAGATTAGGAAAGAGATGCTAAAAAAGGGTGGGCAGTTTGCTGCCATTAAC 884
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 787 GCCAACTACCAGATTAGGAAAGAGATGCTAAAAAAGGGTGGACAGTTAGCTGCCATTAAC 846
Query 885 TTGGAATCTCGAGCAGCTCTG-TTAGCAGCGAAGCATGGATTTGCAGGGGCTGCATCCAG 943
||||||||||||||||| ||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 847 TTGGAATCTCGAGCAGCCCTGCTT-GCAGCAAAGCATGGCTTTGCAGGAGCTGCATCCAG 905
Query 944 ATACATTGGCTTAAAAACAGCGATGCAATTACTTGGCCCCATGATGTGGGGGACATTACT 1003
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 906 ATACATTGGCTTAAGAACAGCGATGCAATTACTCGGCCCCATGATGTGGGGGACATTACT 965
Query 1004 GGCTGACTTAGTGATTCAGATGCTCGAGACTGACTACGCTAGAATCCTAAGAGCAATTTA 1063
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 966 GGCTGACTTAGTTATTCAGATGCTCGAGACTGACTACGCTAGAATCTTAAGAGCAATTTA 1025
Query 1064 CGCATTTGCACAGGATTGTTTTGTTTTGCAGATTCGGATCACCAGGACATACAGGCTACC 1123
||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1026 CGCTTTTGC------T------------CAGATTCGGATCACCAGGACATACAGGCTACC 1067
Query 1124 TTGTAAATGAAGTAACAGTTT-GTTTTCTC 1152
||||||||||||||||||||| ||||||||
Sbjct 1068 TTGTAAATGAAGTAACAGTTTTGTTTTCTC 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5