BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73480.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926720 jgi|Araly1|926720|scaffold_202281.1 2187 0.0
Ahg920765 jgi|Araly1|920765|scaffold_102046.1 758 0.0
> Ahg926720 jgi|Araly1|926720|scaffold_202281.1
Length=1439
Score = 2187 bits (1184), Expect = 0.0
Identities = 1365/1449 (94%), Gaps = 25/1449 (2%)
Strand=Plus/Plus
Query 306 TCTGATTCATTTTTCTTGGTTTATGATCTGTTCAAGTAAAGGAACAATCTTAATCGCTAG 365
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TCTGATTCATTTCT-TTGGTTTATGATCTGTTCAAGTAAAGGAACAACCTTAATCGCTAG 59
Query 366 AGGTAAAAATTCAAATACAATCCCTAGATTACCCCTAAAAGGGTCATCCACAAATTACGC 425
|| |||||||||||| ||||||| ||||||||||||| |||||||||| |||| | |
Sbjct 60 CGGAAAAAATTCAAATTCAATCCCAAGATTACCCCTAACAGGGTCATCCGCAAA-T---C 115
Query 426 GAATCGAATTCAAATTCGAAACCCAATCAGTGTC---AAAACTTTCCGGCGATCA---TC 479
| | |||||||||||||||||||| |||||| ||||| ||||| |||||| ||
Sbjct 116 G----G-ATTCAAATTCGAAACCCAATTAGTGTCGAAAAAACATTCCGACGATCATCGTC 170
Query 480 -T--TCATCGTCAATGGCGGTGGAAACAATGTCGATGGGATCAGATTCATCAACTTTGAT 536
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 171 ATCGTCATCATCAATGGCGGTGGAAACAATGTTGATGGGATCAGATTCATCAACTTTGAT 230
Query 537 TCTAACATCAGGAGCAAGCGGTCGCGTTAGGGTACTCTTCTCGATGCGAGAGCTTAAGCG 596
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 231 TCTAACATCTGGAGCAAGCGGTCGCGTTAGAGTACTCTTCTCGATGCGAGAGCTCAAGCG 290
Query 597 TCTCGTTACGATTATCCAATCGTTGATTCTTTTCCTCCTCCTTCCGTTTCGCGTCGTCGT 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCTCGTGACGATTATCCAATCGTTGATTCTTTTCCTCCTCCTTCCGTTTCGCGTCGTCGT 350
Query 657 TTGGCGGCGGAGGACTGGTGCGGTGGTTATCAGAGACGATAAGCAAGAGAGGAAGGTTTG 716
||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 351 TTGGCGGAGGAGGACTGGTGCGGTGGTCATCAGAGACGATAAACAGGAGAGGAAGGTTTG 410
Query 717 GTCTCCTCCGCAGATCGTGGTGAGGAAGAGGAACATCGGTGGCG-AA----A-GCAGCGT 770
|||||| ||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 411 GTCTCCGCCGCAGATCGTGGTGAGGAAGAGGAACATCGGTGGCGAAAGCGGATGCAGCGT 470
Query 771 TTCTCCTCCGTCGGTTCCAGCTGCGGTGGTGGATGGGGAGGTTGCTGTTCGACGTGAACT 830
||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||
Sbjct 471 TTCGCCTCCGTCGGTTCCGGCGGCGGTGGTGGATGAGGAGGTTGCTGTTCGACGTGAGCT 530
Query 831 GGCGATTAAGCGAGTTTTGGAGGATGAAGGCGGCGATGGAAGCTCCGTCAGAGATTATTC 890
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GGCGATTAAGCGAGTATTGGAGGATGAAGGCGGCGATGGAAGCTCCGTCAGAGATTATTC 590
Query 891 GCTATTCACGACGAAGAGAGGAGATACGTTGTTTAGTCAGTCATGGTCACCTCTTTCCCC 950
||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 591 GCTTTTCACGACGAAGAGAGGTGATACGTTGTTTACACAGTCATGGTCACCTCTTTCCCC 650
Query 951 AAATCACAGGGGACTTATTGTTCTGCTACATGGATTAAACGAGCATAGTGGCAGGTATAG 1010
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAATCACAGGGGGCTTATTGTTCTGCTACATGGATTAAACGAGCATAGTGGCAGGTATAG 710
Query 1011 TGATTTTGCAAAGCAGCTTAATGCTAATGGGTTCAAGGTCTATGGAATTGACTGGATCGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGATTTTGCAAAGCAGCTTAATGCTAATGGGTTCAAGGTCTATGGAATTGACTGGATCGG 770
Query 1071 TCATGGCGGAAGTGATGGACTTCATGCTTACGTTCCTTCCCTTGATTACGCTGTCACAGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 TCATGGCGGAAGTGATGGACTTCATGCTTACGTTCCTTCCCTTGATTACGCTGTCGCAGA 830
Query 1131 TTTGAAATCATTTCTTGAAAAGGTATTCACAGAGAATCCAGGACTCCCCTGTTTCTGCTT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTTGAAATCATTTCTTGAAAAGGTATTCACAGAGAATCCAGGACTCCCCTGTTTCTGCTT 890
Query 1191 TGGACACTCAACAGGTGGAGCAATCATCCTCAAGGCTATGCTGGATCCAAAGATTGAATC 1250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 891 TGGACACTCAACAGGTGGAGCAATCATTCTCAAGGCTATGCTGGATCCAAAGATTGAATC 950
Query 1251 TCGAGTTTCAGGCATTGCATTGACTTCACCAGCTGTTGGAGTCCAACCATCCCATCCAAT 1310
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 TCGAGTTTCAGGCATTGTATTGACTTCACCAGCTGTTGGAGTTCAACCATCCCATCCAAT 1010
Query 1311 CTTCGCTGTTCTTGCTCCAATCATGGCGTTTCTACTACCCAGGTACCAAATCAGTGCAGC 1370
|||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1011 CTTCGCAGTTCTTGCTCCAATCATGGCGTTCCTCCTGCCCAGGTACCAAATCAGTGCAGC 1070
Query 1371 AAACAAGAAAGGAATGCCGGTTTCTCGTGACCCAGCAGCTCTCATCGCCAAATACTCTGA 1430
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1071 AAACAAGAAAGGAATGCCGGTTTCTCGTGATCCAGCAGCTCTTATCGCCAAATACTCTGA 1130
Query 1431 CCCATTAGTCTTCACCGGATCCATCCGGGTTAAAACCGGCTACGAGATCCTTAGAATCAC 1490
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 CCCGTTAGTCTTCACCGGATCCATCCGGGTTAAAACCGGATACGAGATCCTTAGAATCAC 1190
Query 1491 TGCTCACTTGCAACAGAACCTGAACAAAGTGAAAGTTCCCTTTCTTGTGATGCACGGTAC 1550
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1191 TGCTCACTTGCAACAGAACCTGAACAAAGTGAAAGTTCCTTTTCTTGTGATGCACGGTAG 1250
Query 1551 TGACGACACAGTTACCGATCCTAGCGCCTCAAAGAAGCTCTACGAGGAAGCTGCCTCGTC 1610
||||||||||| |||||||||| ||| |||||||||||||| ||||||||| |||||||
Sbjct 1251 AGACGACACAGTGACCGATCCTAACGCTTCAAAGAAGCTCTATGAGGAAGCTTCCTCGTC 1310
Query 1611 AGACAAATCACTCAAGCTCTACGACGGGTTGTTGCACGATCTTCTTTTTGAACCCGAACG 1670
||||||||| ||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 1311 GGACAAATCAATCAAGCTCTACGATGGGTTATTGCACGATCTTCTCTTCGAACCCGAACG 1370
Query 1671 AGAAATCATCGCTGGAGCCATATTAGATTGGCTAAACCAGCGGGTTTAGCTCGTTCAAAC 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AGAAATCATCGCTGGAGCCATATTAGATTGGCTAAACCAGCGGGTTTAGCTCGTTCAAAC 1430
Query 1731 CAACAATCA 1739
|||||||||
Sbjct 1431 CAACAATCA 1439
> Ahg920765 jgi|Araly1|920765|scaffold_102046.1
Length=1224
Score = 758 bits (410), Expect = 0.0
Identities = 773/945 (82%), Gaps = 37/945 (4%)
Strand=Plus/Plus
Query 794 CGGTGGTGGATGGGGAGGTTGCTGTTCGACGTGAA-CTGGCGATTAAGCGAGTTTTGGAG 852
||||||| |||| || || || ||| |||| ||| |||| || | ||| |||||||||
Sbjct 274 CGGTGGTTGATGATGAAGTGGCGGTTAGACG-GAATTTGGCAATGAGGCGCGTTTTGGAG 332
Query 853 GATGAA-GGCGGCGATGGAAGCTCCGTCAGAGATTAT-TCGCTATTCACGACGAAGAGAG 910
||| || || ||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 333 GAT-AACGGTGGCGATGGAAGCTCCGTCAGAGATT-TCTCGCTATTCACGACCAAGAGAG 390
Query 911 GAGATACGTTGTTTAGTCAGTCATGGTCACCTCTT---TCCCCAAATCACAGGGGACTTA 967
| || |||||||| | |||||||||| ||||| || ||| | || |||||||||||
Sbjct 391 GTGACACGTTGTTCACTCAGTCATGGACACCTGTTGACTCCGCTAAGAACAGGGGACTTG 450
Query 968 TTGTTCTGCTACATGGAT-TAAACGAGCATAGTGGCAGGTATAGTGATTTTGCAAAGCAG 1026
|||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||
Sbjct 451 TTGTTCTGCTACATGG-TCTGAACGAACACAGTGGCAGGTATAGTGATTTTGCAAAGCAG 509
Query 1027 CTTAATGCTAATGGGTTCAAGGTCTATGGAATTGACTGGATCGGTCATGGCGGAAGTGAT 1086
|| |||| |||||| ||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 510 CTAAATGTTAATGGATTCAAGGTCTATGGAATAGATTGGATCGGTCATGGTGGAAGCGAT 569
Query 1087 GGACTTCATGCTTACGTTCCTTCCCTTGATTACGCTGTCACAGATTTGAAATCATTTCTT 1146
|||||||||||||||||| |||| |||||||| |||||| | ||||||||||| ||||||
Sbjct 570 GGACTTCATGCTTACGTTGCTTCTCTTGATTATGCTGTCGCTGATTTGAAATCGTTTCTT 629
Query 1147 GAAAAGGTA-TTCACAGAGAATCCAGGACTCCCCTGTTTCTGCTTTGGACACTCAACAGG 1205
|| |||||| || | || || || ||| | |||||||||||| |||| |||||||||||
Sbjct 630 GAGAAGGTAATTG-CGGAAAACCCGGGATTGCCCTGTTTCTGCATTGGCCACTCAACAGG 688
Query 1206 TGGAGCAATCATCCTCAAGGCTATGCTGGATCCAAAGATTGAATCTCGAGTTTCAGGCAT 1265
||||| || ||| | ||||| ||||| ||| ||||||||||| ||||||||||||| ||
Sbjct 689 AGGAGCCATAATCTTAAAGGCCATGCTAGATGCAAAGATTGAAGCTCGAGTTTCAGGGAT 748
Query 1266 TGCATTGACTTCACCAGCTGTTGGAGTCCAACCATCCCATCCAATCTTCG-CTGTTCTTG 1324
|| | |||||||| || ||||||||||||||| | |||| ||||||| | || |||
Sbjct 749 TGTGCTAACTTCACCCGCAGTTGGAGTCCAACCAACTTATCCTATCTTCGGC-GTAATTG 807
Query 1325 CTCCAATCATGGCGTTTCT-ACTACCCAGGTACCAAATCAGTGCAGCAAACAAGAAAGGA 1383
| ||| || | |||| || | |||| || || || | ||||| ||||| |||||| |
Sbjct 808 CACCAGTCCTCTCGTTCCTCA-TACCGAGATATCAGTTAAGTGCTGCAAAAAAGAAAATA 866
Query 1384 ATGCCGGTTTCTCGTGACCCAGCAGCTCTCATCGCC-AAATACTCTGACCCATTAGTCTT 1442
|||||||||||||||||||| | |||||| || | | ||||||||||||||| ||||||
Sbjct 867 ATGCCGGTTTCTCGTGACCCGGAAGCTCT-ATTGGCTAAATACTCTGACCCACTAGTCTA 925
Query 1443 CACCGGATCCATCCGGGTTAA-AACCGGCTA-CGAGATCCTTAGAATCACTGCTCACTTG 1500
||| |||| ||||| | || |||||| || ||||||||||||| | |||||| ||
Sbjct 926 CACTGGATTTATCCGAGC-AAGAACCGG-TAACGAGATCCTTAGACTTGGTGCTCATTTA 983
Query 1501 CAACAGAACCTGAACA-AAGTGAAAGTTCCCTTTCTTGTGATGCACGGTACTGAC-GACA 1558
| ||||| ||||||| || | || ||||| ||||||||||||||||| || | | || |
Sbjct 984 CTGCAGAATCTGAACAGAA-TCAAGGTTCCGTTTCTTGTGATGCACGGCACAG-CTGATA 1041
Query 1559 CAGTTACCGATCCTAGCG---CCTCAAAGAAGCTCTACGAGGAAGCTGCCTCGTCAGACA 1615
||||||| ||||||| | || |||| | ||| ||| | || ||| ||||||| || |
Sbjct 1042 CAGTTACTGATCCTAAAGGTACC-CAAA-A-GCTATACAACGAGGCTTCCTCGTCCGATA 1098
Query 1616 AATC-ACTCAAGCTCTACGACGGGTTGTTGCACGATCTTCTTTTTGAACCCGAACGAGAA 1674
| || | ||||||| ||||| |||||||| |||||||| || |||||||| |||||||||
Sbjct 1099 AGTCGA-TCAAGCTGTACGATGGGTTGTTACACGATCTGCTCTTTGAACCAGAACGAGAA 1157
Query 1675 A-TCATCGCTGGAGCCATATTAGATTGGCTAAACCAGCGGGTTTA 1718
| | |||||||||| |||||| ||||||||||||| |||||||||
Sbjct 1158 ACT-ATCGCTGGAGTCATATTGGATTGGCTAAACCGGCGGGTTTA 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5