BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73602.1
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908972 jgi|Araly1|908972|Al_scaffold_0002_2053 2444 0.0
> Ahg908972 jgi|Araly1|908972|Al_scaffold_0002_2053
Length=1473
Score = 2444 bits (1323), Expect = 0.0
Identities = 1426/1476 (97%), Gaps = 6/1476 (0%)
Strand=Plus/Plus
Query 200 ATGGCT-TCGTATGGCGAGGAGCGTGAAATCCAAAAGAATTACTGGAAAGAGCATTCAGT 258
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 ATGGCTGT-GTATGGCGAGGAGCGTGAAATCCAAAAGAATTACTGGAAAGAGCACTCTGT 59
Query 259 GGGATTGAGTGTTGAAGCTATGATGCTTGATTCCAAAGCTTCTGACCTCGACAAAGAAGA 318
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGGATTGAGTGTAGAGGCCATGATGCTTGATTCCAAAGCTTCTGACCTCGACAAAGAAGA 119
Query 319 ACGTCCTGAGATACTTGCGTTTCTTCCACCTATTGAAGGGACAACAGTGCTAGAGTTTGG 378
||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 120 ACGTCCTGAGATACTTGCGCTTCTTCCACCGATTGAAGGGAAAACAGTGCTAGAGTTTGG 179
Query 379 TGCTGGAATTGGTCGTTTTACTACTGAA-TTAGCTCAGAAGGCCGGCCAGGTCATTGCGG 437
|||||||||||||||||| |||||| || |||||||| ||||| |||||| |||||||||
Sbjct 180 TGCTGGAATTGGTCGTTTCACTACT-AATTTAGCTCACAAGGCTGGCCAGCTCATTGCGG 238
Query 438 TTGACTTCATTGAAAGTGTTATCAAAAAGAATGAGAACATTAACGGTCACTACAAGAACG 497
|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 239 TTGACTTCATTGAAAGTGTTATCAAAAAGAATCAAAACATTAACGGGCACTACAAGAACG 298
Query 498 TCAAATTTCTGTGCGCTGATGTCACATCACCAAATATGAACTTTCCAAATGAGTCTATGG 557
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 299 TCAAATTTCTGTGCGCTGATGTCACATCGCCAAATATGAACTTTCTAAACGAGTCTATGG 358
Query 558 ATCTGATATTCTCCAACTGGCTGCTAATGTATCTCTCTGATCA-AGAGGTTGAAGATTTG 616
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 359 ATCTGATATTCTCCAACTGGCTGCTAATGTATCTCTCTGAT-AGAGAGGTTGAAGATTTG 417
Query 617 GCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTTCTTTCGGGAGTCTTGT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTTCTTTCGGGAGTCTTGT 477
Query 677 TTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTACCGTGAACCTAAA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTACCGTGAACCTAAA 537
Query 737 TTTTACACAAAGCTTTTCAAAGAATGCCATATGAATGACGAAGATGGGAATTCGTATGAA 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTTTACACAAAGCTTTTCAAAGAATGCCATATGAATGACGAAGATGGGAATTCGTATGAA 597
Query 797 CTCTCTTTGGTTAGCTGTAAATGCATTGGAGCTTATGTGAGAAACAAAAAGAACCAGAAC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCTCTTTGGTTAGCTGTAAATGCATTGGAGCTTATGTGAGAAACAAAAAGAACCAGAAC 657
Query 857 CAGATATGCTGGCTTTGGCAGAAAGTCAGTTCGGATAATGATAGGGGCTTCCAACGCTTC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGATATGCTGGCTTTGGCAGAAAGTCAGTTCGGATAATGATAGGGGCTTCCAACGCTTC 717
Query 917 TTGGACAATGTCCAGTATAAGTCTAGTGGTATCTTACGCTATGAGCGTGTCTTTGGAGAA 976
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 718 TTGGACAATGTCCAGTATAAGTCAAGTGGTATCTTACGCTATGAGCGTGTATTTGGAGAA 777
Query 977 GGGTTTGTTAGCACAGGGGGACTCGAGACAACAAAGGAATTCGTGGATATGCTGGATCTG 1036
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 778 GGCTTTGTTAGCACAGGGGGACTCGAGACAACGAAGGAATTTGTGGATATGCTTGATCTG 837
Query 1037 AAACCTGGCCAAAAAGTTCTAGACGTTGGGTGCGGAATAGGAGGAGGGGACTTCTACATG 1096
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAACCTGGCCAGAAAGTTCTAGACGTTGGGTGCGGAATAGGAGGAGGGGACTTCTACATG 897
Query 1097 GCTGAGAACTTTGACGTGGATGTTGTGGGCATTGATCTATCTGTAAACATGATCTCTTTT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCTGAGAACTTTGACGTGGATGTTGTGGGCATTGATCTATCTGTAAACATGATCTCTTTT 957
Query 1157 GCGCTTGAACACGCAATAGGACTCAAATGCTCTGTAGAATTCGAAGTAGCTGATTGCACC 1216
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCGCTTGAACATGCAATAGGACTCAAATGCTCTGTAGAATTCGAAGTAGCTGATTGCACC 1017
Query 1217 AAGAAGGAGTATCCTGATAACACCTTTGATGTTATTTATAGCAGAGACACCATTCTACAT 1276
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1018 AAAAAGGAGTATCCTGATAACACCTTTGATGTTATTTACAGCAGAGACACCATTCTGCAT 1077
Query 1277 ATCCAAGACAAGCCAGCATTGTTCAGAAGATTCTACAAATGGTTGAAGCCGGGAGGGAAA 1336
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1078 ATCCAAGACAAGCCAGCATTGTTCAGAACATTCTACAAATGGTTGAAGCCGGGAGGGAAA 1137
Query 1337 GTTCTCATCACTGATTACTGCAGAAGCCCCAAAACCCCATCTCCAGACTTTGCAATCTAC 1396
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1138 GTTCTCATCACTGATTACTGCAGAAGCCCCAAAACCCCATCTTCAGACTTTGCAAACTAT 1197
Query 1397 ATCAAGAAACGAGGTTATGATCTTCATGATGTACAAGCATACGGTCAGATGCTGAGAGAT 1456
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATCAAGCAACGAGGTTATGATCTTCATGATGTACAAGCATACGGTCAGATGCTGAGAGAC 1257
Query 1457 GCTGGTTTCGAGGAGGTAATCGCGGAGGATAGAACCGATCAGTTCATGAAAGTCCTGAAA 1516
||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCTGGATTCGAAGAGGTAACCACAGAGGATAGAACCGATCAGTTCATGAAAGTCCTGAAA 1317
Query 1517 CGGGAACTGGATGCAGTGGAGAAGGAGAAGGAAGAATTCATCAGTGACTTCTCGAAAGAG 1576
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1318 CGGGAACTGGATGCAGTAGAGAAGGAGAAGGAAGAATTCATCAGCGACTTCTCGGAAGAG 1377
Query 1577 GATTACGAGGATATTATAGGCGGGTGGAAGTCAAAGCTACTTAGGAGCTCAAGTGGTGAG 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GATTACGAGGATATTATAGGCGGGTGGAAGTCAAAGCTACTTAGGAGCTCAAGTGGTGAG 1437
Query 1637 CAGAAGTGGGGTTTGTTCATCGCCAAGAGAAACTGA 1672
|||||||||||||||||||||||||||||||| |||
Sbjct 1438 CAGAAGTGGGGTTTGTTCATCGCCAAGAGAAATTGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69133794675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5