BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73630.1 Length=718 Score E Sequences producing significant alignments: (Bits) Value Ahg476499 jgi|Araly1|476499|fgenesh2_kg.2__1629__AT1G73630.1 758 0.0 > Ahg476499 jgi|Araly1|476499|fgenesh2_kg.2__1629__AT1G73630.1 Length=648 Score = 758 bits (410), Expect = 0.0 Identities = 473/503 (94%), Gaps = 6/503 (1%) Strand=Plus/Plus Query 9 aaaaatggcaaacacaaatcttgaatccaccaacaaatccacaacaccatcaacGGATAT 68 |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| Sbjct 1 AAAAATGGCAAACACAAATCCTGAATCCGCTAACAAATCCACAACACCATCAACGGATAT 60 Query 69 GGAGCTAAAGAAAGTCTTCGA-CAAGTTCGA-TGCCAACGGCGACGGGAAAATCTCAGTT 126 ||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||| Sbjct 61 GGAGCTAAAGAAAGTCTTCGACCAA-TTCGACT-CCAACGGCGACGGGAAAATCTCAGTT 118 Query 127 TCAGAACTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACTGAGGAGGAGCTAAAC 186 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 119 TCAGAGCTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACAGAGGAGGAGCTAAAC 178 Query 187 CGTGTATTAGACGAAATCGACATCGACT-GCGACGGTTTCATCAATCAAGAAGAGTTTGC 245 ||||| |||||||||||||||||||| | | ||||||||||||||||| |||||||| || Sbjct 179 CGTGTGTTAGACGAAATCGACATCGA-TCGTGACGGTTTCATCAATCAGGAAGAGTTCGC 237 Query 246 TACCATTTGTCGATCATCTTCCTCCGCTGTAGAGATCCGTGAAGCGTTCGATCTCTACGA 305 ||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||| Sbjct 238 TACCATTTGCCGATCATCTTCCTCCGCAGCAGAGATACGTGAAGCGTTCGATCTCTACGA 297 Query 306 TCAGAATAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAAGTTCTGAATCGTCTTGG 365 |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 298 TCAGAACAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAGGTTCTTAATCGTCTTGG 357 Query 366 TATGACTTGCTCTGTTGAAGATTGTGTGAGAATGATTGGTCATGTTGATACTGATGGCGA 425 |||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 358 TATGTCTTGCTCTGTTGAAGATTGTGTGAGAATGATCGGTCATGTTGATGCTGACGGCGA 417 Query 426 TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG 477 Query 486 AACCGTTGCGAACTCTTAGAGTT 508 | |||| |||||| ||||| ||| Sbjct 478 ATCCGTCGCGAACACTTAGGGTT 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26419181481 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5