BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73630.1

Length=718
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476499 jgi|Araly1|476499|fgenesh2_kg.2__1629__AT1G73630.1         758    0.0  


> Ahg476499 jgi|Araly1|476499|fgenesh2_kg.2__1629__AT1G73630.1
Length=648

 Score =  758 bits (410),  Expect = 0.0
 Identities = 473/503 (94%), Gaps = 6/503 (1%)
 Strand=Plus/Plus

Query  9    aaaaatggcaaacacaaatcttgaatccaccaacaaatccacaacaccatcaacGGATAT  68
            |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct  1    AAAAATGGCAAACACAAATCCTGAATCCGCTAACAAATCCACAACACCATCAACGGATAT  60

Query  69   GGAGCTAAAGAAAGTCTTCGA-CAAGTTCGA-TGCCAACGGCGACGGGAAAATCTCAGTT  126
            ||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct  61   GGAGCTAAAGAAAGTCTTCGACCAA-TTCGACT-CCAACGGCGACGGGAAAATCTCAGTT  118

Query  127  TCAGAACTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACTGAGGAGGAGCTAAAC  186
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  119  TCAGAGCTCGGAAACGTTTTCAAATCCATGGGAACGTCGTACACAGAGGAGGAGCTAAAC  178

Query  187  CGTGTATTAGACGAAATCGACATCGACT-GCGACGGTTTCATCAATCAAGAAGAGTTTGC  245
            ||||| |||||||||||||||||||| | | ||||||||||||||||| |||||||| ||
Sbjct  179  CGTGTGTTAGACGAAATCGACATCGA-TCGTGACGGTTTCATCAATCAGGAAGAGTTCGC  237

Query  246  TACCATTTGTCGATCATCTTCCTCCGCTGTAGAGATCCGTGAAGCGTTCGATCTCTACGA  305
            ||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct  238  TACCATTTGCCGATCATCTTCCTCCGCAGCAGAGATACGTGAAGCGTTCGATCTCTACGA  297

Query  306  TCAGAATAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAAGTTCTGAATCGTCTTGG  365
            |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  298  TCAGAACAAAAACGGTTTGATTTCGTCCTCTGAGATCCATAAGGTTCTTAATCGTCTTGG  357

Query  366  TATGACTTGCTCTGTTGAAGATTGTGTGAGAATGATTGGTCATGTTGATACTGATGGCGA  425
            |||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct  358  TATGTCTTGCTCTGTTGAAGATTGTGTGAGAATGATCGGTCATGTTGATGCTGACGGCGA  417

Query  426  TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  TGGAAATGTTAATTTCGAGGAGTTTCAGAAGATGATGTCGTCGCCTGAGCTCGTTAAGGG  477

Query  486  AACCGTTGCGAACTCTTAGAGTT  508
            | |||| |||||| ||||| |||
Sbjct  478  ATCCGTCGCGAACACTTAGGGTT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26419181481


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5