BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73650.3 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 1083 0.0 > Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 Length=1359 Score = 1083 bits (586), Expect = 0.0 Identities = 627/647 (97%), Gaps = 2/647 (0%) Strand=Plus/Plus Query 194 GTGATTTACCAGTTCATATTCTTCGTAATCACGGCTCTTTTCAAATTTGATCAAGTCACT 253 ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732 Query 254 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTCAAAGCC 313 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTTAAAGCC 792 Query 314 TCTTGGCATTTTCGACAGATAGTATTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 373 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 793 TCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 852 Query 374 GGGATTTTCCTTCTAATGAGGATCTTGCAATGGGGGGAAGATCGTCGCTTTGATGAACAG 433 ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 853 GGGATATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAACAG 912 Query 434 CGTGGAAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCTGTGTGGGTTTGGACG 493 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 913 CGTGGGAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCCGTGTGGGTTTGGACG 972 Query 494 GTTAGCTTACCTTTAACAC-TTGTTAATGCAAGTGATGGTGGTGGATCTCTTAAACCCGC 552 ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| Sbjct 973 GTTAGCTTACCTTTAAC-CGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAAACCCGC 1031 Query 553 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 1091 Query 613 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1092 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 1151 Query 673 CTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGAATCTT 732 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1152 GTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGGATCTT 1211 Query 733 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 1271 Query 793 TCTCACTTTGCTACTTCTATTCGTCAGCGGCATACCATTACTCGAGG 839 |||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1272 TCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5