BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73660.1
Length=3940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476506 jgi|Araly1|476506|fgenesh2_kg.2__1636__AT1G73660.1 4841 0.0
Ahg472032 jgi|Araly1|472032|fgenesh2_kg.1__1986__AT1G18160.1 1306 0.0
> Ahg476506 jgi|Araly1|476506|fgenesh2_kg.2__1636__AT1G73660.1
Length=3871
Score = 4841 bits (2621), Expect = 0.0
Identities = 2885/3009 (96%), Gaps = 32/3009 (1%)
Strand=Plus/Plus
Query 880 GGATTTAGGTTCCAAAGATCCAGCTGTTGAAGAAGAGAATCAGATACAGTTGGCTTTAGA 939
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GGATTTAGGCTCCAAGGATCCAGCTGTTGAAGAAGAGAATCAGATACAGTTGGCTTTAGA 942
Query 940 GTTAAGTGCTAGAGAAGATCCTGAGGCTACTCAGATTGAGGCTATTAAGCAATTCAGTTT 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTTAAGTGCTAGAGAAGATCCTGAGGCTACTCAGATTGAGGCTATTAAGCAATTCAGTTT 1002
Query 1000 AGGCTCTTGTGCTCCTGAGAACTCTCCAGCTGAACTCATCGCTTATCGCTACTGGAATTA 1059
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1003 AGGCTCTTGTGCTCCTGAGAACTCTCCAGCCGAACTCATCGCTTATCGGTACTGGAATTA 1062
Query 1060 CAATTGTCTTGGCTATGATGACAAGATCTTGGATGGTTTTTATGACTTGTATGGAGTGTT 1119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1063 CAATTGTCTTGGCTATGATGACAAGATCTTGGATGGTTTTTATGACTTGTATGGAGTGAT 1122
Query 1120 GAATGCATCCTCAGCAGAAAGAATACCTCCTTTGCTCGATCTTCAAGGGACACCTGTTTC 1179
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GAATGTATCCTCATCAGAAAGAATACCTCCTTTGCTCGATCTTCAAGGGACACCTGTTTC 1182
Query 1180 AGACGGTGTGACATGGGAAGCTGTTCTTGTGAACAGAAGTGGGGATTCTAATCTGTTGAG 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGACGGTGTGACATGGGAAGCTGTTCTTGTGAACAGAAGTGGGGATTCTAATCTGTTGAG 1242
Query 1240 ACTTGAACAGATGGCTCTTGATATTGCTGCTAAATCAAGATCAGTTTCTTCCTCTGGTTT 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GCTTGAACAGATGGCTCTTGATATTGCTGCTAAATCAAGATCAGTTTCTTCCTCTGGTTT 1302
Query 1300 TGTGAATAGTGAATTGGTAAGGAAACTGGCTATTTTAGTGGGAGATTACATGGGTGGACC 1359
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1303 TGTGAACAGTGAATTGGTAAGGAAACTGGCTATTTTGGTTGGAGATTACATGGGTGGACC 1362
Query 1360 AGTCGTGCACCCAGAGAGCATGTTGAGAGCTTGGAGGAGTCTTAGCTATAGTTTGAAAGC 1419
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1363 AGTCGTGCACCCAGATAGTATGTTGAGAGCTTGGAGGAGTCTTAGCTACAGTTTGAAAGC 1422
Query 1420 AACTCTTGGAAGCATGGTTTTGCCACTTGGTTCTCTGACTATTGGTTTGGCTCGTCACCG 1479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1423 AACTCTTGGAAGCATGGTTTTGCCACTTGGTTCTCTAACTATTGGTTTGGCTCGTCACCG 1482
Query 1480 AGCCTTGTTATTCAAAGTATTGTGTGATAGTGTTGGTGTTCCTTGTCGAATAGTCAAAGG 1539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1483 GGCCTTGTTATTCAAAGTATTGTGTGATAGTGTTGGTGTTCCTTGTCGGATAGTCAAAGG 1542
Query 1540 TCAGCAATATACCGGTTCTGAAGATGTGGCAATGAACTTTATTAAGGCTGATGATGGCAG 1599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ACAGCAATATACCGGTTCTGAAGATGTGGCAATGAACTTTATTAAGGCTGATGATGGCAG 1602
Query 1600 GGAGTACATTGTTGATCTTATGGGAGATCCCGGCACGCTTATTCCAGCTGATGCAGCTGG 1659
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1603 GGAGTACATTGTTGATCTCATGGGAGATCCCGGCACACTTATTCCAGCTGATGCAGCTGG 1662
Query 1660 ACTACAAATAGACTATGATGAATCTGCCTATTCCGCTAGTCCTGGAGACAATGATTCAAT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1663 ACTACAAATAGACTATGATGAATCTGCCTATTCCGCTAGTCCTGGAGACAATGTTTCATT 1722
Query 1720 TCATGTAGCTTCTTCCAGCAATGGTATTGAAAGCTCATATGAAGAGAATACAGAGTTTCG 1779
|||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||
Sbjct 1723 TCATGTAGCTTCTTCCAGCAATGGGATTGAGAGCTCATTTGAAGAGAATGCAGAGTTTCG 1782
Query 1780 AACAGGGGAACATCGTTCTAGTACCAAGAGTTCTGGGGAGAGAAACCAATCCGGAGGTGG 1839
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1783 AACAGGGGAAGATCATTCTAGTACCAAGAGTTCTGGGGCGAGAAACCAATCCGGAGGTGA 1842
Query 1840 AGGCGATCTCATTGTTCATCCAAATATTTCTAGAGAAGATGTGAAAAATCAGAAGAAAGT 1899
|||| ||||||||||||||||||| |||||||| ||||| |||| |||||||||||| ||
Sbjct 1843 AGGCAATCTCATTGTTCATCCAAAGATTTCTAGGGAAGAAGTGAGAAATCAGAAGAATGT 1902
Query 1900 TGAAAAGGCTCCATTTCAAAATCTGTCTAGCAGGCCTATTCATTCTTTCACCCATATGAG 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 TGAAAAGGCTCCATTTCAAAATCTGTCTAGCAGGCCTATTCATTCTTTCACCCATATGAG 1962
Query 1960 ATCACCTTCTTGGACTGAAGGGGTTAGCTCCCCAGCTGCACAAAGGATGAAAGTCAAAGA 2019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1963 ATCACCTTCTTGGACTGAAGGGGTTAGCTCCCCAGCTGCACAGAGGATGAAAGTCAAAGA 2022
Query 2020 TGTTTCACAATATATGATTGATGCTGCTAAAGAGAATCCACGGTTAGCTCAGAAGCTTCA 2079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2023 TGTTTCACAATATATGATTGATGCTGCCAAAGAGAATCCACGGTTAGCTCAGAAGCTTCA 2082
Query 2080 TGATGTATTACTTGAAAGCGGAGTTGTAGCTCCTCCCAATTTATTTTCCGAAGTCTATCC 2139
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 2083 TGATGTATTACTTGAAAGCGGAGTTGTAGCTCCTCCCAGTTTATTTTCCGAAGTTTATCC 2142
Query 2140 CCAGCAATTGGAGGCAACTGTTGAAAGCAAAAACTCGACTGAAGCCAAGAAAGAGAGAGG 2199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2143 CCAGCAATTGGAGGCAACTGTTGAAAGCAAAAACTCGACTGAAGCCAAGAAAGAGAAAGG 2202
Query 2200 AAAAGATTTAGAGACAACTCAGGAAGGAAGACACCAAAACGGTTTTGGTCCAGTGAGGTT 2259
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 AAAAGATTTAGAGACAGCTCAGGAAGGAAGACACCAAAACGGTTTTGGTCCAGTGAGGTT 2262
Query 2260 TTTGCCTCCATTACCAAGAGTGCAATCTAAAACAAATGCACATGATCAACGTGATAATGG 2319
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2263 TTTGCCTCCATTACCAAGAGTACGCTCTAAAACAAATGCACATGATCAACGTGATAATGG 2322
Query 2320 CAAAGTTGTAAGTCAGTCTGATTCTTCACATTCTGAAGCATCTTCGACAGAATATGCCAG 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323 CAAAGTTGTAAGTCAGTCTGATTCTTCACATTCTGAAGCATCTTCGACAGAATATGCCAG 2382
Query 2380 AACCGTCCctgctgctgtagctgcagctgctgttgttgcatcttccatggttgctgctgc 2439
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2383 AACCGTTCCTGCTGCTGTAGCTGCAGCTGCTGTTGTTGCATCTTCAATGGTTGCTGCTGC 2442
Query 2440 tgctgccaagtctgcAAACTCAGACTCCTCCCCCATAGAACTTCCTGCTGC-AGCTGCTG 2498
||||||||||||||| |||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 2443 TGCTGCCAAGTCTGCTAACTCAGACTCCTCCCCCGTAGAACTTCCTGCGGCCA-CTGCTG 2501
Query 2499 CCACGGCCACTGCTGCTGCAGTTGTGGCAACAGCTGCAGCCGTGTCCAGGCAACTTGAAT 2558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2502 CCACGGCCACTGCTGCTGCAGTTGTGGCAACAGCTGCGGCCGTGTCCAGGCAACTTGAAT 2561
Query 2559 TAGGCTCGAATAGCGACGGGGATGATGGTTCTGGTGGGCATGAGCCTCAAGGTAGTGGGG 2618
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 2562 TAGGCTCGAATAGCGACGGGGATGCTGGTTCTGGTGGGCATGATCCTCAAGGTAGTGGGG 2621
Query 2619 ACTCTAATCATGGGCCAAATTCAGGAGGGGAAAGAATATCTGACAAATCTATTGGCAATG 2678
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 2622 ACTCTAATCATGGGCCAAATTCAGGAGGGGAAAGAATATCTGACAGATCTATTGACAACG 2681
Query 2679 AAAGTTCTAAGTCAGACTGTGATGATGTATCTGACTGTGAGATTTTGTGGGAAGAAATTA 2738
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2682 AAAGTTCCAAGTCTGACTGTGATGATGTATCTGACTGTGAGATTTTGTGGGAAGAAATTA 2741
Query 2739 CTGTGGGAGAACGTATTGGACTTGGATCTTATGGAGAAGTGTATCGGGGAGATTGGCACG 2798
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2742 CTTTGGGAGAACGTATTGGACTCGGATCTTATGGAGAAGTGTATCGGGGAGATTGGCACG 2801
Query 2799 GGACTGAAGTGGCTGTCAAGAAGTTCCTTGATCAAGATTTAACAGGAGAAGCATTGGAGG 2858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 GGACTGAAGTGGCTGTCAAGAAGTTCCTTGATCAAGATTTAACAGGAGAAGCATTGGAGG 2861
Query 2859 AATTCAGAAGTGAGGTCCGAATCATGAAAAAGCTAAGACATCCCAACATTGTTCTCTTCA 2918
|||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 2862 AATTCAGAAGTGAGGTCCGAATCATGAAAAAGGTTAGACACCCCAACATTGTTCTCTTCA 2921
Query 2919 TGGGAGCTGTGACTCGCCCACCGAATCTTTCAATTGTTACAGAGTTTCTTCCTAGAGGTA 2978
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2922 TGGGAGCTGTGACTCGTCCACCGAATCTCTCAATTGTTACAGAGTTTCTTCCTAGAGGTA 2981
Query 2979 GCTTGTATAGGTTAATCCACCGGCCAAATAACCAATTAGACGAGAGGAGGCGCCTGAGAA 3038
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2982 GCTTGTATAGGTTAATCCACCGGCCAAATAACCAATTAGACGAGAGGAGGCGTCTAAGAA 3041
Query 3039 TGGCCCTTGATGCTGCTCGTGGAATGAACTATTTGCACAGCTGTAATCCGATGATTGTCC 3098
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3042 TGGCTCTTGATGCTGCTCGTGGAATGAACTATTTGCACAGCTGTAATCCGATGATTGTCC 3101
Query 3099 ATCGCGATCTTAAGTCCCCAAACCTTCTAGTTGACAAAAACTGGGTCGTGAAGGTGTGTG 3158
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3102 ATCGCGATCTAAAGTCCCCAAACCTTCTAGTTGACAAAAATTGGGTCGTGAAGGTGTGTG 3161
Query 3159 ATTTTGGATTGTCTAGGATGAAACACAGTACATACCTCTCTTCAAAGTCAACAGCAGGGA 3218
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3162 ATTTTGGGTTGTCTAGAATGAAACACAGTACATACCTCTCTTCAAAGTCAACAGCAGGCA 3221
Query 3219 CGGCTGAATGGATGGCTCCAGAAGTGCTAAGAAACGAACCTGCTGATGAGAAGTGCGATG 3278
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3222 CGGCTGAATGGATGGCTCCAGAAGTGCTTAGAAACGAACCTGCTGATGAGAAGTGCGATG 3281
Query 3279 TTTACAGCTACGGTGTGAT-CTTATGGGAACTCTTTACGTTACAACAACCGTGGGGAAAG 3337
|||||||||| |||||||| || ||||||||||||||||||||| ||||| |||||||||
Sbjct 3282 TTTACAGCTATGGTGTGATTCT-ATGGGAACTCTTTACGTTACAGCAACCATGGGGAAAG 3340
Query 3338 ATGAACCCGATGCAAGTAGTTGGGGCAGTTGGGTTTCAGCATCGACGTCTTGACATTCCC 3397
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3341 ATGAACCCGATGCAAGTTGTTGGGGCAGTTGGGTTTCAGCATCGACGTCTTGACATTCCC 3400
Query 3398 GACTTTGTAGATCCAGCAATTGCAGATCTCATCAGTAAATGCTGGCAGACGGATTCAAAG 3457
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3401 GACTTTGTCGATCCAGCAATTGCAGATCTCATCAGTAAATGCTGGCAGACGGATTCAAAG 3460
Query 3458 TTAAGGCCAAGTTTTGCAGAGATAATGGCGTCTCTAAAGCGGCTACAGAAACCTGTAACA 3517
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3461 TTAAGGCCAAGTTTTGCAGAGATAATGGCTTCTCTAAAGCGGCTACAGAAACCTGTAACA 3520
Query 3518 GGTTCCAACATCCCAAGACCAGTCCCCAGTTCCTCTTCATTACCAACTGAACATGAACAA 3577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3521 GGTTCCAACATCCCAAGACCAGTCCCCAGTTCCTCTTCATTACCAACTGAACATGAACAA 3580
Query 3578 AAGGATTGATAACAGAAGAAGACG-A--CCAAAGTGGCAAACACATTTTTGACGAATTCA 3634
|||||||||||||| ||||||| | | |||||||||||||||||||||||| | |||||
Sbjct 3581 AAGGATTGATAACAAAAGAAGAAGGAGACCAAAGTGGCAAACACATTTTTGATGGATTCA 3640
Query 3635 ATCTGTTTGAAGGaa-aaaaaa--GCTACAAATGTTCCTTCTCTGCTACTTTTTGCCTCA 3691
||||||||||||||| |||||| || ||||||||||| |||||||||||||||| ||||
Sbjct 3641 ATCTGTTTGAAGGAAGAAAAAAAAGCAACAAATGTTCCATCTCTGCTACTTTTTGGCTCA 3700
Query 3692 GCTTCAGTGTTTGACACAGCTTGTGAATTGTGA--AAAAGAAAGATTCATGGAAGATGAC 3749
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 3701 GCTTCAGTGTTTCACACAGCTTGTGAATTGTGATTAAAAGAAC-ATTCATGGAAGATGAC 3759
Query 3750 GATTGAAGAAGGTGAAGGATTGTGCTCGTGTGTTTTGTTGTCTTTGCTTGCAAGCGATGT 3809
||||||||||||||||||||||||||||| | | ||| | | | ||| |||
Sbjct 3760 GATTGAAGAAGGTGAAGGATTGTGCTCGT-T-T---GTT-T-T--G-TTG-------TGT 3802
Query 3810 TCATGTTCATGCGTAAT-T-TCCTCTATTTTGTTTTCCAATATTGAAACTGTACAAAGAG 3867
|||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||
Sbjct 3803 TCATGTTCATGCGTAAAATATCCTCTGTTTTGTTTTCCAAAATTGAAACTGTACAAAGAG 3862
Query 3868 AGAAAGAAA 3876
|||||||||
Sbjct 3863 AGAAAGAAA 3871
Score = 1051 bits (569), Expect = 0.0
Identities = 760/842 (90%), Gaps = 53/842 (6%)
Strand=Plus/Plus
Query 13 TTTTTTCTTGTTCTGTTTTGTTTTGCATGTCACAGTAAGTAACTCTCCTCCTCAATTATC 72
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTTTTTTGTTTTGTTTTATTTTGCATGTCACAGTAAGTAACTCTCCTCCTCAATTCTC 60
Query 73 AAAAATGCAAACTTTAATTTTCTTCTAGAGAAGAGCCACTCTCTCCACTTCTTTCTTTGT 132
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAATCCAAACTTTAA-TTTCTTCTAGAGAAGAGCCACTCTCTCCACTTCTTTCTTTGT 119
Query 133 CCAACTTTT-TAGACAGA-GAAAGTGGCGTCAGAGATAGATAGAGAGATACATATTCAAG 190
||||||||| |||||||| |||||||||| | || |||||| ||| ||||
Sbjct 120 CCAACTTTTATAGACAGATAAAAGTGGCGT-----A-AG--AGAGAG----ATA--CAAG 165
Query 191 TTGGTTGAAGGAGGAGAATTAGCGGTTCATATCAGTACGGAGAAAATTGTCAGTCATATG 250
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 166 TT-GTTGAAGGAGGAGAATTAGCGGTTCATATCAGTACGGAG-AAATTGTCAGTCATATG 223
Query 251 Ctttttt-tCTTTAAATTCTGCATTTGAGTGGGTGTGTGCTTTTAACCATTTTGGTGATT 309
||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 224 CTTTTTTCTCTTTAAATTCTGCATTTGAGTGGGTGTGTGCTTTTAACCATTCTCGTGATT 283
Query 310 TATCaaaaaaaaaaaaaaaaTTCTGTGTGTTTTGAGCTCAAGCTCTCTACAAATTTTGCT 369
|||| | ||||||||| |||||| |||||| |||||||||||
Sbjct 284 TATC-----AGAAAAAAAAA--------------AGCTCATTCTCTCTGCAAATTTTGCT 324
Query 370 GTCTCAAGTTTTTGCCTTTTGAAGTCCA-ATAAAGTTGAAATCTTTGTTC--TTTTTGAT 426
|| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 325 GTTTCAAGTTTTTGCCTTTTGAAGTCCAGATAAAGTTGAAATCTTTGTTCTTTTTTTAAT 384
Query 427 TGGTCTTCGTGAATTCCGGTGAAAGTTTCAAACTTTTGATTTAAATTCC-GGGGAGGAAT 485
||||||||||||||||||||||||||||||||| ||| | | ||||||| |||||| |||
Sbjct 385 TGGTCTTCGTGAATTCCGGTGAAAGTTTCAAAC-TTTAAATCAAATTCCGGGGGAGAAAT 443
Query 486 TAGGGTTTATGAAAGTAAAAGAAGAAACTTTGAAGAATTTGGGAGATGGAGTGGTTTTAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TAGGGTTTATGAAAGTAAAAGAAGAAACTTTGAAGAATTTGGGAGATGGAGTGGTTTTAA 503
Query 546 GACCTGTTGATCATTGTTCTAGCATTTGGAGTATGAAGATGAACATGAAGAACTTTCTTA 605
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GACCAGTTGATGATTGTTCTAGCATTTGGAGTATGAAGATGAACATGAAGAACTTTCTTA 563
Query 606 AGAAACTTCATATCTCGCCCAATCAATCAGATGAAGCTGAAGGATCAATTTCAACAAC-- 663
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 564 AGAAACTTCATATCACGCCGAATCAATCAGATGAAGCTGAAGGATCAGTTTCAACAACAA 623
Query 664 ----TA--AG-AGCAATCATCATAAGTCTATCGATGTATCATCATCATCATCACCGAGGT 716
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 624 CGACTACTAGGAGCAATCATCATAAGTCTATCGATGTATCATCATCATCATCACCAAGGT 683
Query 717 CTCATCACAGCAATAGCCCTGAAATCAAACCTTTTTCTGGTTTATCTAATTGGTTAAGTT 776
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 684 CTCATCACAGCAATAGCCCTGAAATCAAACCTTTTTCTGGTTTATCGAATTGGTTAAGCT 743
Query 777 CTGTTGGTCATAGAAAAATCCCTAGTCCTCCTAATTCTTTCAATGCCAAGAACAGAGCCG 836
||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 744 CTGTTAGTCATAGAAAAAGCCCTAGTCCACCTAATTCTTTCAATGCCAAGAACAGAGCCG 803
Query 837 CC 838
||
Sbjct 804 CC 805
> Ahg472032 jgi|Araly1|472032|fgenesh2_kg.1__1986__AT1G18160.1
Length=3408
Score = 1306 bits (707), Expect = 0.0
Identities = 1454/1799 (81%), Gaps = 114/1799 (6%)
Strand=Plus/Plus
Query 563 TCTAGCATTTGGAGTATGAAGATGAACATGAAGAACTTTCTTAAGAAA-CTTCATATCTC 621
|||| |||||||||||||||||||||||||||||| |||||||| ||| |||| |||| |
Sbjct 262 TCTAACATTTGGAGTATGAAGATGAACATGAAGAAATTTCTTAA-AAAGCTTCGTATCAC 320
Query 622 GCCCAATCAATC-AGATGAAGCTGAAGGATCAATTTCAACAACTAAG-AGCAATCA-TCA 678
|||||||||| | ||| || | |||||| ||| | || | ||| || |||||| | ||
Sbjct 321 GCCCAATCAA-CGAGACGATGGTGAAGGGTCAGTCTC-A-AAC--AGAAGCAATAAGTC- 374
Query 679 TAAGTCTATCG-ATGTATCATCAT-CATC--A-TCACCGAGGTCTCATCACAGCAATAGC 733
| ||| || | | | | |||| | | || | ||| |||| || ||| || ||| |
Sbjct 375 T-AGT-GAT-GCA-GAACCATC-TCCTTCAGATTCATTGAGG--TC-TCA-AG--ATAAC 423
Query 734 CCTGAAATCAAACCTTTTTCTGGTTTATCTAATTGGTTAAGTTCTGTTGGTCATAGAAAA 793
||||| ||||||| ||||| |||||||| |||||||| || ||||||| ||| ||||||
Sbjct 424 ACTGAATTCAAACCCTTTTCGGGTTTATCAAATTGGTTCAGCTCTGTTGCTCACAGAAAA 483
Query 794 ATCCC-TAGTCCTCCTAATTCTTTCAAT-GCCAAGAACA-G-AGCCGCCACGG---TTGA 846
| ||| | || ||| ||| | |||| || |||| | | | | ||| || ||
Sbjct 484 AGCCCTTCTTCTTCC-AATGCCACCAATAGCAAAGAGGATGAAACTACCATGGAACATGG 542
Query 847 T-GACACTGTT--GTTGTTAA--TGGGTCA-GA-ACA---TGTGGATT-TAG--GTTCCA 893
| | | | ||| || | || |||| | || || | ||| || ||| |||||
Sbjct 543 TGGTC-CCGTTGGGTCG-GAATCTGGG--AGGATGCAGGGTTTGGGTTCTAGTAATTCCA 598
Query 894 AAGATCCAGCTGTTGAAGAAGAGA-ATCAGATACAGTTGGCTTTAGAGTTAAGTGCTAGA 952
| ||||||| ||||| ||||| | ||||||||||||||||| | ||| ||||||||||
Sbjct 599 AGGATCCAGAAGTTGAGGAAGA-ATATCAGATACAGTTGGCTCTGGAGCTAAGTGCTAGG 657
Query 953 GAAGATCCTGAGGCTACTCAGATTGAGGCTATTAAGCAATTCAGTTTAGG----C-T-CT 1006
|| |||||||| ||| |||||||||||||||| ||||| ||||||||||| | | ||
Sbjct 658 GAGGATCCTGAAGCTGCTCAGATTGAGGCTATGAAGCAGTTCAGTTTAGGTTCTCGTCCT 717
Query 1007 TGTGCTCCTGAGAACTCTCCAGCTGAACTCATCGCTTATCGCTACTGGAATTACAATTGT 1066
| |||||| ||||| ||||| ||||||||||| || ||| | ||||||||||| || |||
Sbjct 718 TCTGCTCCCGAGAATTCTCCTGCTGAACTCATGGCATATAGATACTGGAATTATAACTGT 777
Query 1067 CTTGGCTATGATGACAAGATCT-TGGATGGTTTTTATGACT-TGTATGGAGTGTTGAATG 1124
|||||||||||||||||||| | |||||||||| ||||| | ||| |||||| ||||||
Sbjct 778 CTTGGCTATGATGACAAGAT-TGTGGATGGTTTCTATGA-TCTGTGTGGAGTAATGAATG 835
Query 1125 CATCCTCAGCAGAAAGAATACCT-CCTTTGCTCGATCTTCAAGGGACACCTGTTTCAGAC 1183
||| || ||||||||||||| |||| | | |||||||| ||||||| | | |||||
Sbjct 836 AATCTTCCTTAGAAAGAATACCTCCCTTAG-TTGATCTTCAGGGGACACTTATGTCAGAT 894
Query 1184 GGTGTGACATGGGAAGCTGTTCTTGTGAACAGAAGTGGGGATTCTAATCTGTTGAGACTT 1243
||||| || ||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 895 GGTGTAACTTGGGATGCTGTTCTAGTGAACAGAAGCCAAGATTCGAATCTGTTGAGACTT 954
Query 1244 GAACAGATGGCTCTTGATATTGCTGCTAAATC-AAGATCAGTTTCTTCCTCTGGTTTTGT 1302
||||| ||||||||||||||||| || ||||| ||| |||| ||||| || || |||||
Sbjct 955 GAACAAATGGCTCTTGATATTGCAGCAAAATCAAAG-TCAGCGTCTTCTTCAGGGTTTGT 1013
Query 1303 GAATAGTGAATTGGTAAGGAAACTGGCTA-TTTTAGTGGGAGATTACATGGGTGGACCAG 1361
||| |||||||||||| |||||||||| | |||| || | ||||||||||||||||||||
Sbjct 1014 GAACAGTGAATTGGTACGGAAACTGGC-AGTTTTGGTTGCAGATTACATGGGTGGACCAG 1072
Query 1362 TCGTGCACCCAGAGAGCATGTTGAGAGCTTGGAGGAGTCTTAGCTATAGTTTGAAAGCAA 1421
| ||| | ||||| |||| ||| ||||||||| ||||||| ||||| || ||||||||||
Sbjct 1073 TTGTGGATCCAGATAGCACGTTAAGAGCTTGGTGGAGTCTGAGCTACAGCTTGAAAGCAA 1132
Query 1422 CTCTTGGA-AGCATGGTTTTGCCACTTGGTTCTCTGACTATTGGTTTGGCTCGTCACCGA 1480
| | | | |||||||||||||| || |||||||| |||||||| ||||||||||| ||
Sbjct 1133 C-CCTCCATAGCATGGTTTTGCCCCTGGGTTCTCTAACTATTGGATTGGCTCGTCATCGT 1191
Query 1481 GCCTTGTTATTCAAAGTATTGTGTGATAGTGTTGGTGTTCCTTGTCGAATAGTCAAAGGT 1540
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 GCCTTGTTATTCAAAGTTTTGTGTGATAGTGTCGGTGTTCCTTGTCGAATAGTCAAAGGA 1251
Query 1541 CAGCAATATACCGGTTCTGAAGATGTGGCAATGAACTTTATTAAGGCTGATGATGGCAGG 1600
||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||||
Sbjct 1252 CAGCAATATACCGGTTCCGATGATGTGGCAATGAACTCCATTAAGACTGATGATGGCAGG 1311
Query 1601 GAGTACATTGTTGATCTTATGGGAGATCCCGGCACGCTTATTCCAGCTGATGCAGCTGGA 1660
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1312 GAGTACATTGTTGATCTTATGGGAGATCCAGGCACGCTTATCCCCGCTGATGCAGCTGGA 1371
Query 1661 CTACAAATAGACTATGATGAATCTGCCTATTCCGCTAGTCCTGGAGACAATGATTCAAT- 1719
|||||||| ||||||||||| |||| |||| | || ||||| |||| ||||||| |
Sbjct 1372 CTACAAATGGACTATGATGATTCTGTCTATACTGCCAGTCCCAGAGATGCTGATTCA-TC 1430
Query 1720 TCATGTAGCTTCTTCCAGCAATGGTATTGAAAGCTCATAT-GAAGAGA-ATACAGAGT-T 1776
|||||||||||||||||||| ||| | || |||||| || ||||| | | ||||| | |
Sbjct 1431 TCATGTAGCTTCTTCCAGCAGTGGGGTGGAGAGCTCA-ATTGAAGA-ACACACAGAATCT 1488
Query 1777 TCGAACAGGGGAACATCGTTCTA-GTACCAAGAGTTCTGGGGAGAGAAA-CCAATCCGGA 1834
| | ||| |||||||||||||| | |||||| |||| ||||| |||| |||||| | |
Sbjct 1489 TGGT-CAGCGGAACATCGTTCTAAG-ACCAAGGGTTCCCGGGAG-GAAAACCAATCTGCA 1545
Query 1835 GGTGGAGGCGATCTCATTG-TTCATCCAAATATTT-CTAGAGAAGATGTGAAAAATCAGA 1892
|||||||| |||||||| | ||| || |||||||| | || |||| |||| |
Sbjct 1546 GGTGGAGGGGATCTCAT-GATTCGTCGAAATATTTTC-AGGGAAGTTGTG--------G- 1594
Query 1893 AGAAAGTTGAAAAGGCTCCAT-TTCAAAATCTGTCTAGCAGGCCTA-TTCATTCTTTCAC 1950
||| || |||||||||| | ||||| |||| || |||| ||||| || ||||| ||||
Sbjct 1595 -GAA-GTC-AAAAGGCTCC-TGTTCAACATCTTTCCAGCAAGCCTACTT-ATTCTCTCAC 1649
Query 1951 CCATATGAGATCACCTTCTTGGACTGAAGGGGTTAGCTCCCCAGCTGCACAAAGGATGAA 2010
||| ||||||||||||||||||||||| |||||||| ||||||| || ||||||||
Sbjct 1650 TCATGCCAGATCACCTTCTTGGACTGAAGGTGTTAGCTCTCCAGCTGGACGCAGGATGAA 1709
Query 2011 AGTCAAAGATGTTTCACAATATATGATTGATGCTGCTAAAGAGAATCCACGGTTAGCTCA 2070
|||||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 1710 AGTCAAAGATGTATCACAATATATGATCGATGCTGCCAAAGAGAATCCACAATTAGCTCA 1769
Query 2071 GAAGCTTCATGATGTATTACTTGAAAGCGGAGTTGTAGCTCCTCCCAATTTATTTTCCGA 2130
||||||||||||||| || |||||||| |||||||||||||||| ||||||||||| ||
Sbjct 1770 GAAGCTTCATGATGTGTTGCTTGAAAGTGGAGTTGTAGCTCCTCGGAATTTATTTTCGGA 1829
Query 2131 AGTCTATCCCCAG-CAATTGGAGGCAACTGTTGAAAGCAAAAACTC-GACTGAAGCCAA- 2187
||||||| | || |||| | ||||||| | ||||| |||| || | ||||| ||||
Sbjct 1830 AGTCTATTCAGAGTCAATAG-AGGCAACAGGTGAAATCAAAT-CTGTGGCTGAATCCAAT 1887
Query 2188 GAAAGAGAGAGGAAAAGATTTAGAGA-CAACTCAGGAAGGAAGACACCAAAACGGTTTTG 2246
|| |||| ||| |||||||| | || ||| |||| |||||||| |||| | | | |||
Sbjct 1888 GAT-GAGAAAGGGAAAGATTTTG-GAACAATTCAGCAAGGAAGAAACCAGAGCAATCTTG 1945
Query 2247 GTCCAGTGAGGTTTTTGCCTCCA-TTACCAAGAGTGCAATCTAAAACAAATGCACATGA 2304
| || ||||||||||||||||| || |||||| |||||||||| ||||| | |||||
Sbjct 1946 GCCCTGTGAGGTTTTTGCCTCCTCTT-CCAAGACCGCAATCTAAAGCAAATACCCATGA 2003
Score = 1037 bits (561), Expect = 0.0
Identities = 1027/1241 (83%), Gaps = 75/1241 (6%)
Strand=Plus/Plus
Query 2331 GTCAGTCTGATTCTTCACATTCTGAAGCATCTTCGACAGAATATGCCAGAACCGTCCctg 2390
||||||||||||| |||||||||||| |||| | || || ||| |||||| || ||||
Sbjct 2063 GTCAGTCTGATTCGTCACATTCTGAAACATC-T--ACTGACTATCCCAGAAATGTTCCTG 2119
Query 2391 ctgctgtagctgcagctgctgttgttgcatcttccatggttgctgctgctgctgccaagt 2450
||| ||||||||||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct 2120 TTGCCGTAGCTGCAGCGGCTGTTGTTGCATCTTCCATGGTTG-T--TGCTGCCGCCAAGT 2176
Query 2451 ctgcAAACTCAGACTCCTCCCCCATAGAACTTCCTGCTGCAGCTGCTGCCACGGCCACTG 2510
| |||||||| || |||||| | |||||||| | || || | | || | |||
Sbjct 2177 CAGCAAACTCGGATTCCTCCACTTTAGAACTT--T-CT---GC--C-G-CA--G---CTG 2221
Query 2511 CTGCTGCAGTTGTGGCAACAGCTGCAGCCGTGTCCAGGCAACTTGAATTAGGCTCGA-AT 2569
|||||||||||||||| ||||||||||| ||| |||||| |||||| ||| || | |
Sbjct 2222 CTGCTGCAGTTGTGGCGACAGCTGCAGCAGTGAGCAGGCAGCTTGAACTAGATTC-ACTT 2280
Query 2570 AGCGACGGGGATGATGGTTCTGGTGGGCATGAGCCTCAAGGTAGTGGGGACTCTAATCAT 2629
||| || ||| ||| | ||||| | || | || ||| || |||
Sbjct 2281 AGCAAC-GGG--GAT-G--CTGGT-----T----CT----G--GT-GGG---CT--TCAC 2313
Query 2630 GGGCCAAATTCAGGAGGGGAAAGAATATCTGACAAATCTATTGGCAATGAAAGTTCTAAG 2689
||| | |||||||||| || |||||||||||| ||||| ||||||||||||||| ||
Sbjct 2314 GGGGTAGATTCAGGAGGAGAGCGAATATCTGACAGATCTACTGGCAATGAAAGTTCAAAA 2373
Query 2690 TCAGA--CTG----TGATGATGTATCTGACTGTGAGATTTTGTGGGAAGAAATTACTGTG 2743
|| || ||| ||||||||| |||| || |||||||||||||| ||| ||||||||
Sbjct 2374 TCTGATCCTGCAAATGATGATGTGGCTGAATGCGAGATTTTGTGGGAGGAAGTTACTGTG 2433
Query 2744 GGAGAACGTATTGGACTTGGATCTTATGGAGAAGTGTATCGGGGAGATTGGCACGGGACT 2803
| || ||||| ||||| ||||| || ||||| || ||| ||||||||||||| || |||
Sbjct 2434 GCTGAGCGTATCGGACTGGGATCATACGGAGAGGTTTATAGGGGAGATTGGCATGGAACT 2493
Query 2804 GAAGTGGCTGTCAAGAAGTTCCTTGATCAAGAT-TTAACAGGAGAAGCATTGGAGGAATT 2862
| ||||||||||||||||||| |||| |||||| || || ||||| ||| ||||||||||
Sbjct 2494 GCAGTGGCTGTCAAGAAGTTCATTGACCAAGATATT-ACGGGAGAGGCACTGGAGGAATT 2552
Query 2863 CAGAAGTGAGGTCCGAATCATGAAAAAGCTAAGACATCCC-AACATTGTTCTCTTCATGG 2921
||||||||||||||| || |||| || ||| || || ||| |||||||||||||||||||
Sbjct 2553 CAGAAGTGAGGTCCGGATGATGAGAAGGCTCAGGCA-CCCTAACATTGTTCTCTTCATGG 2611
Query 2922 GAGCTGTGACTCGCCCACCGAATCTTTCAATTGTTACAGAGTTTCTTCCTAGAGGTAGCT 2981
||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 2612 GAGCTGTAACTCGCCCACCAAATCTCTCAATTGTTACAGAATTTCTTCCTAGAGGTAGCT 2671
Query 2982 TGTATAGGTTAATCCACCGGCCAAATAACCAATTAGACGAGAGGAGGCGCCTGAGAATGG 3041
||||||||||||||||| |||| |||||||||||||| || | | ||| ||||| ||||
Sbjct 2672 TGTATAGGTTAATCCACAGGCCTAATAACCAATTAGATGACCGAAAGCGTCTGAGGATGG 2731
Query 3042 CCCTTGATGCTGCTCGTGGAATGAACTATTTGCACAGCTGTAATCCGATGATTGTCCATC 3101
| ||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||
Sbjct 2732 CTCTTGATGCTGCTCGTGGAATGAATTATTTACACAGCTGTAATCCGGTAATTGTCCATC 2791
Query 3102 GCGATCTTAAGTCCCCAAACCTTCTAGTTGACAAAAACTGGGTCGTGAAGGTGTGTGATT 3161
| |||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 2792 GTGATCTTAAATCTCCAAACCTTCTAGTTGACAAAAACTGGGTTGTCAAGGTGTGCGATT 2851
Query 3162 TTGGATTGTCTAGGATGAAAC-ACAGTACATACCTCTCTTCAAAGTCAACAGCAGGGACG 3220
|||| |||||||| |||||| | || ||||||||||||||||||||||||||||| |||
Sbjct 2852 TTGGGTTGTCTAGAATGAAAGTA-AGCACATACCTCTCTTCAAAGTCAACAGCAGGCACG 2910
Query 3221 GCTGAATGGATGGCTCCAGAAGTGCTAAGAAACGAACCTGCTGATGAGAAGTGCGATGTT 3280
|| ||||||||||||||||||||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 2911 GCCGAATGGATGGCTCCAGAAGTGCTTAGAAATGAACCCGCGGATGAAAAGTGTGATGTG 2970
Query 3281 TACAGCTACGGTGTGAT-CTTATGGGAACTCTTTACGTTACAACAACCGTGGGG-AAAGA 3338
|||||||| || || || || |||||||||||||||||||| || || ||||| ||| |
Sbjct 2971 TACAGCTATGGAGTCATTCTC-TGGGAACTCTTTACGTTACAGCAGCCATGGGGGAAA-A 3028
Query 3339 TGAACCCGATGCAAGTAGTTGGGGCAGTTGGGTTTCAGCATCGACGTCTTGACATTCCC- 3397
||||||| |||||||| ||||| || ||||||||||| |||||||| ||||| || |||
Sbjct 3029 TGAACCCAATGCAAGTGGTTGGCGCGGTTGGGTTTCAACATCGACGACTTGATAT-CCCT 3087
Query 3398 GACTTTGTAGATCCAGCAATTGCAGATCTCATCAGTAAATGCTGGCAGACGGATTCAAAG 3457
|| ||||| ||||| | |||||||||| ||||||| ||||| |||||||||||| ||| |
Sbjct 3088 GATTTTGTGGATCCTGAAATTGCAGATATCATCAGGAAATGTTGGCAGACGGATCCAAGG 3147
Query 3458 TTAAGGCCAAGTTTTGCAGAGATAATGGCGTCTCTAAAGCGGCTACAGAAACCTGTAACA 3517
||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||| |
Sbjct 3148 TTAAGACCAAGTTTTGCAGAGATCATGGCTTCTCTAAAGCAGCTACAGAAACCTGTGATG 3207
Query 3518 GGTTCCAA-CATCCCA-AGA-C--CAGTCCCCAGTTCCTCT 3553
||| |||| ||||| | ||| | |||| |||||||| |||
Sbjct 3208 GGT-CCAAACATCC-AGAGAGCAGCAGTTCCCAGTTCTTCT 3246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148919283149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5