BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73680.2 Length=2051 Score E Sequences producing significant alignments: (Bits) Value Ahg926743 jgi|Araly1|926743|scaffold_202304.1 2543 0.0 > Ahg926743 jgi|Araly1|926743|scaffold_202304.1 Length=2010 Score = 2543 bits (1377), Expect = 0.0 Identities = 1478/1528 (97%), Gaps = 2/1528 (0%) Strand=Plus/Plus Query 503 TGTAGTGGCGACAAAGTTGTTAGCGAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 562 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 468 TGTAGTGGCGACAAAGTTGTTAGCTAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 527 Query 563 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 587 Query 623 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAGTGGATGTCCATTGAAGTC 682 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 588 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAATGGATGTCCATTGAAGTC 647 Query 683 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGATGATCACCACAAATCTGGCGCTGT 742 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 648 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGGTGATCACCACAAATCTGGCGCTGT 707 Query 743 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGACTGGAAT 802 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 708 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGGCCGGAAT 767 Query 803 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 827 Query 863 GAGGGACGAAAGAGGTGTTCCGATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 922 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 828 GAGGGACGAAAGAGGTGTTACTATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 887 Query 923 TCTGTTGCAAGCTCTCTTTGTCAAAGAACACAACTCCGTCTGTGATATGCTCAAAGAACG 982 ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 888 TCTGTTGCAAGCTCTCTTTGTGAAAGAACATAACTCTGTCTGTGATATGCTCAAAGAACG 947 Query 983 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTTGTGACAGCAGCGGT 1042 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 948 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTGGTGACTGCAGCGGT 1007 Query 1043 TATCGCTAAGGTTCATACGATCGATTGGACAATAGAACTCTT-AAAGACAGACACACTCA 1101 |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| Sbjct 1008 TATCGCTAAGGTTCATACAATCGATTGGACAATAGAACTCTTGAAA-ACAGACACACTCA 1066 Query 1102 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTTGGGAAGAAAGTGAAGGACATGGTTG 1161 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1067 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTAGGGAAGAAAGTGAAGGACATGGTCG 1126 Query 1162 GAGCAAGATTTGGTCCTCTATTTAGCGGATTAGTTGGTCTGAAGAAACCGAATGATCATG 1221 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1127 GAGCAAGATTTGGTCCTATATTTAGCGGCTTAGTTGGTCTGAAGAAACCGAAAGATCATG 1186 Query 1222 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1187 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1246 Query 1282 CAGAGACACTTATACTCCGAGATATGAACTCTGAGAATGTAGACAAAGAAAACCCTGCAA 1341 ||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||| Sbjct 1247 CAGAGACACTTATCCTCCGAGATATGAAATCTGAGAATGTTGACAAAGCAAACCCTGCAA 1306 Query 1342 TAGAACGAGAGATACCGATGACGGAACTGATCGGGAAAAAAGCAGGAGAAAAGGCTTCGA 1401 |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||| Sbjct 1307 TAGAACGAGAGATACCGATGACAGAACTGATCGGGAAAGAAGCAGGACTAAAGGGTTCGA 1366 Query 1402 AACTTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGCGCATTGACAT 1461 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1367 AAATTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGGGCATTGACAT 1426 Query 1462 TGTGGAACTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1521 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1427 TGTGGAATTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1486 Query 1522 GACCTCACCTTATAGACATGGCTGCCTTGGAGATTTATAGAGACCGGGAGAGAGGAGTTC 1581 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1487 GACCTCACCTTATAGATATGGCTGCCTTGGAGATTTATAGAGATCGGGAGAGAGGAGTTC 1546 Query 1582 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1547 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1606 Query 1642 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1607 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1666 Query 1702 AGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCG 1761 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1667 AGCTTGATCTAAACGTGGGATTGCACGCAGAGAAGAAGATCAAAGGATTCGCCATTAGCG 1726 Query 1762 AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1821 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1727 AAACTGCTTTCTTCATCTTTCTCCTCGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1786 Query 1822 TCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTA 1881 |||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 1787 TCACGACGAACTTCAACGAGAAGACGTATACTAAAGAAGGATTAGAGTGGGTCAATACTA 1846 Query 1882 CAGAGACTTTAAAAGATGTGATAGACCGACACTTCCCGAGGTTAACCGATCAATGGATGC 1941 ||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||| Sbjct 1847 CAGAGACTTTAAAAGATGTAATAGACAGACACTTCCCAAGCTTAACCGATCAATGGATGC 1906 Query 1942 GATGTTCGAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAAGAATTGGGTTCCTT 2001 ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1907 GATGTTCTAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAACACTTGGGTTCCTT 1966 Query 2002 TGTACCTCCGATCCGCTCCATAGGCCAT 2029 |||||||||||||||||||||||||||| Sbjct 1967 TGTACCTCCGATCCGCTCCATAGGCCAT 1994 Score = 750 bits (406), Expect = 0.0 Identities = 437/452 (97%), Gaps = 1/452 (0%) Strand=Plus/Plus Query 10 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 60 Query 70 GATAGGGAGACaaaaaaaaa-TCAAGGCAAAAAATGGGTTTCTCTCCATCCTCTTCATGG 128 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GATAGGGAGACAAAAAAAAAATCAAGGCAAAAAATGGGTTTCTCTCCATCTTCTTCATGG 120 Query 129 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCAAGATGTCTTACTTTGATGCTTTTTTG 188 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCGAGATGTCTTACTTTGATGCTTTTTTA 180 Query 189 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGATTTCCAGTGTTATTA 248 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 181 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGGCTTCCAGTGTTATTA 240 Query 249 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTGGTACATGTC 308 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTTGTACATGTC 300 Query 309 GGTCCGATCAACGGTCAGGGTTACGACACCGATGAGTTCTGTTATCGTACGGCTGACGGC 368 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 301 GGTCCGATCAACGGTCAGGATTACGACAACGATGAGTTCTGTTATCGTACGGCTGACGGC 360 Query 369 AAGTGTAACCATCCCTCCGATAACACCATCGGCAGCCAAGGCAGCTTCATCGGCCGGAAT 428 |||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 361 AAGTGTAATCATCCCTCCGACGACTCCATCGGCAGTCAAGGCAGCTTCATCGGCCGGAAT 420 Query 429 ATGCCTCCCTCTACTTCTCAGTACGGCttttt 460 ||||||||||||||||||||||||||| |||| Sbjct 421 ATGCCTCCCTCTACTTCTCAGTACGGCATTTT 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77132746125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5