BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73850.1 Length=2091 Score E Sequences producing significant alignments: (Bits) Value Ahg926763 jgi|Araly1|926763|scaffold_202324.1 2575 0.0 > Ahg926763 jgi|Araly1|926763|scaffold_202324.1 Length=1724 Score = 2575 bits (1394), Expect = 0.0 Identities = 1624/1734 (94%), Gaps = 20/1734 (1%) Strand=Plus/Plus Query 317 gaagaagaaggggaagaaCTCAAGATGTCGTGTAACTCAAGTTACCATGTGATATCTAGA 376 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GAAGAAGAAGGGGAAGAATTCAAGATGTCGTGTAACACAAGTTACCATGTGATATCTAGA 60 Query 377 GATCCAAATCCGGATTTGATAGCTGATATAGCAGACGACGGAGAATCTTTAGTGTTTTAC 436 |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GATCAAAATCCAGATTTGATAGCTGATATAGGGGACGACGGAGAATCTTTAGTGTTTTAC 120 Query 437 AATAATATTTCTCAAGGAGGAGTAAATAATCAACACACG-A--AGGAGTTCAATAATGTC 493 ||||||| |||||||| ||| || ||||||||||||| | ||||||||||||||||| Sbjct 121 AATAATAACTCTCAAGGTGGACTATGTAATCAACACACGAAGGAGGAGTTCAATAATGTC 180 Query 494 TATCAAACTCATGAACACGAAGAAGAGGAAGAAGATGATCAAGATTCTAACACTTCTTCT 553 |||||||||||||||||| | | | |||||||||||||||||||| |||||||||||| Sbjct 181 TATCAAACTCATGAACAC---G-A-A-GAAGAAGATGATCAAGATTCCAACACTTCTTCT 234 Query 554 ACAGAGGAGCACTTTTCTTCTGCCAATGTTTCTCCTTATCGCAGTGAATCATCAATAGAA 613 || ||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||| Sbjct 235 ACGGAGGAACACTTTTCTTCTGCCAATGTTTCTCCTTATCACAGCGAATCATCAGTAGAA 294 Query 614 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 354 Query 674 GAAGAGGTAGGAGGAGTGTCACGATACGACGTCGTTGAGGATTTGGTTCGTAAGCAACC- 732 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 355 GAAGAGGTAGGAGGAGTGTCACGATACGATGTCGTTGAGGATTTGGTTCGTAAGCAACCA 414 Query 733 AA-A-TACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 790 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 AATACTACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 474 Query 791 AAAAGTTACAATGCAAGAGAGTTTGTGTCCAATGGAGGAATCAAGAATGATGTCGACGAG 850 ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 475 AAAAGCTACAATGCAGGAGAGTTTGTGTCTAATGGAGGAATCAAGAATGATGTTGACGAG 534 Query 851 ATACAGCCATCATCGGGCTTTGACATgagagagataaaagcagaggaattagaggaagaa 910 ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| Sbjct 535 ATACAGCCATCATCGGGGTTTTCCATGAGAGAGATCAAAGCAGAGGAATTAGAGGAAGAG 594 Query 911 gaagaagaagagagagGACAAATATTCGGAGAGTCATGCACGAATGGGTCAACGTCGAAA 970 |||||||||||||||||| | ||||||||| |||||| |||||||||||||||||| ||| Sbjct 595 GAAGAAGAAGAGAGAGGAGAGATATTCGGACAGTCATACACGAATGGGTCAACGTCAAAA 654 Query 971 AGCTCATCGGAATGGAGAAACTCTGTCAAAACTGACGACCCTTTCTCAACGTCCTCTCGC 1030 |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 655 AGCTCATCAGAATGGAGAAACTCTGTCAAAACCGACGACCCTTTCTCAACTTCCTCCCGC 714 Query 1031 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 774 Query 1091 TTTCTCACTAGAATCTCTGCTCAAAAGCTTCACGAAGCAGAATCTTTGAAGTCAATTATG 1150 ||||||||||||||| |||||||||||||||||||| | ||||| || |||||||| ||| Sbjct 775 TTTCTCACTAGAATCACTGCTCAAAAGCTTCACGAAACTGAATCGTTAAAGTCAATCATG 834 Query 1151 GTGGAGCCAAGATCTATCTCGGAGAGGATCGTTCACAAGTTATCATCAAACGG-T--CAC 1207 |||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||| Sbjct 835 GTGGAGCCAAGATCGATCTCGGAGAGGATCGTTCACAAGTTATCATCAAATGGATCACAC 894 Query 1208 AAGaaaaaacaaaaaCAATATCCAGGCAGCAATGGGTCGAGACCAAACCCTTACGTGGAA 1267 |||||||||||| ||| ||||| || |||||||||||||||||||||| ||||||||| Sbjct 895 AAGAAAAAACAACAACGTTATCCTGGTGGCAATGGGTCGAGACCAAACCCGTACGTGGAA 954 Query 1268 CTAGAATCCGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1327 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 CTAGAATCAGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1014 Query 1328 AAAAACTTCGAGAGAAAAAGATCAACCACGCAACGAAGCTTCAACGACGTAGGATGTCCC 1387 |||||||||||||||||||||||| ||| || |||||||||||||||||| |||||||| Sbjct 1015 AAAAACTTCGAGAGAAAAAGATCATCCAGGCTACGAAGCTTCAACGACGTCGGATGTCCG 1074 Query 1388 GCCGGAATCGCCGACCAATTCCGTACGTTTCACATTCTTTTACAAAGATACGTAGAAAAT 1447 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 1075 GCCGGCATCGCCGACCAGTTCCGTACGTTTCACATTCTTTTACAAAGATACGTGGAGAAT 1134 Query 1448 GAACCTTATGAACATGGAAGAAGACCAGAGATTTATGCTCGCATGCGAACTCTTGCTCCT 1507 || ||||||||||||||||||||||||||||||||||| || ||| |||||||||| || Sbjct 1135 GAGCCTTATGAACATGGAAGAAGACCAGAGATTTATGCCCGAATGAGAACTCTTGCGCCC 1194 Query 1508 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGAGGAAGAGGAGGAGAAGGAAGACGAG 1567 ||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| ||| Sbjct 1195 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGA-G--GAGGATGAGAAAGAAGAAGAG 1251 Query 1568 AACGAAGAGGGTTTCAGGTCGAGGATATCGTCAGCTTCGTTCTTGATGATAATGGAGGAA 1627 || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1252 AAAGAGGAGGGTTTCAGGTCGAGGATATCGTCAGCGTCGTTCTTGATGATAATGGAGGAA 1311 Query 1628 TGCATAAGAACATTCATGAATTTTCTCCAAGCGGATAAAGAAAAGCCTTGTCAGAAGATC 1687 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| Sbjct 1312 TGCATAAGAACATTCATGAATTTTCTCAAAGCGGATAAAGAGAAGCCTTGTCAAAAGATC 1371 Query 1688 ATCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCCCCGTTGATCCAACCCTTGTACATCTC 1747 |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1372 CTCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCTCCGTTGATCCAACCCTTGTCCATCTC 1431 Query 1748 ATGAAGAAAGTCAACACAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGGAAA 1807 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1432 ATGAAGAAAGTCAACAAAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGAAAA 1491 Query 1808 TACATGAGGAAGAAGAAGATGAGTATAGAGGAGGAAATGGAGATATTGATGGGAT-TAAT 1866 |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| Sbjct 1492 TACATGAGGAAGAAGAAGATGAGTATAGAGGAAGAAATGGAGATATTGATGGG-TCTAAT 1550 Query 1867 AGATTTGAAAGTGGTTTCAAGAGTGTTAAGGATGAATGAAATGAACGAAGAGAATTTGCA 1926 ||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||| Sbjct 1551 AGACTTGAAAGTGGTGTCAAGAGTATTGAGAATGAAAGAAATGAACGAAGAGAATTTGCA 1610 Query 1927 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1986 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1670 Query 1987 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTCTAATCTAAT 2040 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1671 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTTTAATCTAAT 1724 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78656355925 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5