BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73870.1
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476523 jgi|Araly1|476523|fgenesh2_kg.2__1653__AT1G73870.1 1731 0.0
> Ahg476523 jgi|Araly1|476523|fgenesh2_kg.2__1653__AT1G73870.1
Length=1281
Score = 1731 bits (937), Expect = 0.0
Identities = 1176/1289 (91%), Gaps = 25/1289 (2%)
Strand=Plus/Plus
Query 49 ATGGTGGTCGATGTAGAGAGCCGAACCGCGAGCGTGACAGGAGAGAAGATGGCGGCGCGT 108
|||||||||||||| ||||||||| ||| ||||||| | |||| |||||||| |||||||
Sbjct 6 ATGGTGGTCGATGTGGAGAGCCGAGCCGTGAGCGTGCCGGGAGGGAAGATGGTGGCGCGT 65
Query 109 GGCTGTGATGCGTGCATGAAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGATGACGCT 168
| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 66 GCCTGCGATGCGTGCATGGAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGAAGACGCT 125
Query 169 TTCCTATGCCAAAGCTGCGACGCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCAC 228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 126 TTCCTATGCCAAAGCTGCGACTCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCAC 185
Query 229 GAACGTGTCCGGTTACAATCATCTTCGCCGACGGAGACGGCAGACAAAACGACGTCGGTA 288
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 186 GAACGCGTCCGGTTACAATCATCTTCGTCGACGGAGACGGCAGACAAAACGACGTCGGTA 245
Query 289 TGGTACGAAGGATTCAGGAGAAAGGCGAGAACGCCTAGGAGCAAGAG-TTGTGCGTTTGA 347
||||||||||| |||||||||||||||||||| ||||||| |||| | ||| ||||||||
Sbjct 246 TGGTACGAAGGTTTCAGGAGAAAGGCGAGAACTCCTAGGAACAAGGGTTTG-GCGTTTGA 304
Query 348 GAAGTTGTTGCAAATCGAGTCA-AACGATCCTCTTGTTCCGGAGCTTGGTGGAGACGAAG 406
|||||||||||| | ||| | |||||||||||||||||||| ||||||||||| ||||
Sbjct 305 GAAGTTGTTGCAGGTTGAG-GAGAACGATCCTCTTGTTCCGGATCTTGGTGGAGAAGAAG 363
Query 407 ATGATG-GCTTTTTCTCGTTCTCCTCCGTAGAAGAAACCGAGGAGAGTCTGAATTGTTGC 465
| || | | |||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 364 AAGAAGTG-TTTTTCTCGTTCTCTTCCGTAGAAGAAAACGACGAGAGTCTGAATTGTTGC 422
Query 466 GTGCCTGTTTTCGATCCTTTCTCAGACATGCTGATTGATGATATAAACGGCTTTTGCTTA 525
||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 423 GTGCCAGTTTTCGATCCTTTCTCAGACATGGTGATTGATGATATCAACGGCTTTTGCTTA 482
Query 526 GTTCCTGATGAAG---TCAATAACACTACTACT-AATGGAGAATTAGGAGAAGTCGAGAA 581
||||| ||||||| ||||||||||||||| | | | |||| |||||||| ||||| |
Sbjct 483 GTTCCCGATGAAGTCATCAATAACACTACTAATGGA-GAAGAACTAGGAGAACTCGAG-A 540
Query 582 GGCAA-TCATGGACGATGAAGGTTTTATGGGGTTCGTGCCATTGGATATGGATCTTGAGG 640
|| || |||||||||||||||||||||| |||||| |||| ||| |||||||||||||||
Sbjct 541 GGGAAGTCATGGACGATGAAGGTTTTATTGGGTTCTTGCCGTTGAATATGGATCTTGAGG 600
Query 641 ATCTCACTATGGACGTGGAGAGTTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGG 700
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTCACTATGGATGTGGAGAGGTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGG 660
Query 701 AACCAAACGATGTTGGAGTCATCAAAGAAGAGAATAAAGTAGGGTTTGAGATTAATTGTA 760
||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 661 AACCAAACGATATTGGAGTTATCAAAGAAGAGAATAACGTAGAGTTTGAGATTAATTGTA 720
Query 761 AGGATTtgaagagggtgaaagatgaagatgaagaagaagaagaagCCAAGTGTGAAAATG 820
|||||||||||||||| |||||| || | ||||||||||||||||||||||||||||
Sbjct 721 AGGATTTGAAGAGGGTTAAAGAT---GA-G--GAAGAAGAAGAAGCCAAGTGTGAAAATG 774
Query 821 GAGGATCAAAGGATAGTGATAGAGAAGCATCAAATGATAAAGATAGAAAGACAAGTTTGT 880
|||||||||||||||||||| |||||||||| || ||| ||||| ||||||| |||||||
Sbjct 775 GAGGATCAAAGGATAGTGATGGAGAAGCATCTAAGGATGAAGATGGAAAGACGAGTTTGT 834
Query 881 TTCTGAGATTAGATTATGGAGCTGTGATTAGTGCTTGGGATAATCACGGTTCGCCGTGGA 940
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 835 TTCTGAGATTAGATTATGAAGCTGTGATTAGTGCTTGGGATAATCATGGTTCGCCGTGGA 894
Query 941 AAACCGGAATCAAACCGGAGTGCATGTTGGGAGGGAACACGTGTCTGCCTCATGTTGTGG 1000
|||||||||||||| |||||||| ||||||||||||||||||||| | | |||| ||| |
Sbjct 895 AAACCGGAATCAAATCGGAGTGCTTGTTGGGAGGGAACACGTGTCCGTCACATGCTGTAG 954
Query 1001 GTGGGTACGA-GAAATTGATGTCGAGCGACGGATCGGTGACACGTCAGCAagggagagac 1059
|||||| ||| | | ||| ||||| || ||||||||||||||| ||||||| |||||||
Sbjct 955 GTGGGTTCGATG-AGTTGGTGTCGCCCGTCGGATCGGTGACACGCCAGCAAGTGAGAGAC 1013
Query 1060 ggaggaggatcggacggggagagagaggcgagggttttgaggtacaaggagaAGCGGAGG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1014 GGAGGAGGATCGGACGGGGAGAGAGAGGCGAGGGTTTTGAGGTACAAGGAGAAACGGAGG 1073
Query 1120 ACGAGGTTGTTCTCAAAGAAAATAAGATATGAGGTTCGGAAACTTAACGCTGAGCAGAGA 1179
||||| |||||||||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 1074 ACGAGATTGTTCTCAAAGAAGATAAGATACGAGGTTCGGAAACTCAATGCCGAGCAGAGA 1133
Query 1180 CCTCGAATCAAAGGTCGTTTCGTGAAGAGGACGTCACTTTTGACGTGATTTGATTTACTT 1239
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1134 CCTCGAATCAAAGGTCGGTTCGTGAAGAGAACGTCACTTTTGACGTGATTTGATTTACTT 1193
Query 1240 TAATCAACACTTTAAAGATCTTGTAATTAAGACCTTTGAAGTAATTGTCGTAATGTACTG 1299
|||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1194 TAATGAACACTTTAAAGAGCTTGTAATTAAGAACTTTGAAGTAATTGTGGTAATGTACT- 1252
Query 1300 A-ATAATG-AACTGAAACTCTTGGGGCCG 1326
| | ||| |||||||| |||||||||||
Sbjct 1253 ACA-AATTTAACTGAAAATCTTGGGGCCG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51694675452
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5