BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73950.1 Length=1825 Score E Sequences producing significant alignments: (Bits) Value Ahg926773 jgi|Araly1|926773|scaffold_202334.1 2278 0.0 Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1 1376 0.0 > Ahg926773 jgi|Araly1|926773|scaffold_202334.1 Length=1446 Score = 2278 bits (1233), Expect = 0.0 Identities = 1370/1435 (95%), Gaps = 14/1435 (1%) Strand=Plus/Plus Query 113 AGAGAGA-AGAAAGACGATGAACTGTTGGAGAGTGTTGAAATCCGTACAAGCCTCGGTGG 171 ||||| | |||||||||||||||||| |||||||||||||||||| |||||||| ||||| Sbjct 6 AGAGAAACAGAAAGACGATGAACTGTGGGAGAGTGTTGAAATCCGCACAAGCCTTGGTGG 65 Query 172 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGGTGCTCAAGCTCGATCACTCCAT-T 230 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | | Sbjct 66 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGATGCTCAAGCTCGACCACTCCCTGT 125 Query 231 ACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGCAAGG 290 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 126 -CTTACTCCTGGTGGGTTGTGTGTTTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGG 184 Query 291 GGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATGTCAT 350 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 185 GGAAGATTCTCTCTTCCTGCTCCAATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCAT 244 Query 351 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTACTCCTCTGTGTATACCTCGAG 410 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 245 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTGCTTCTCTGTGTATACCTCGAG 304 Query 411 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTATTTCTCCCTTTATTG 470 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 305 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTGTTTCTCCCTTTATTG 364 Query 471 GCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGATGCCTGGA 530 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 365 GCATTTGAAGTAATAATACTGGTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGA 424 Query 531 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 484 Query 591 ATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTT-AAGCTGTCTGGCGA 649 || ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| Sbjct 485 ATTTCCATGGTGTTCTTTCTGGCTGCTACAGTCTTTACCCT-CTTAAAGCTGTCTGGCGA 543 Query 650 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGAGTGCTTTGC 709 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 544 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGC 603 Query 710 GTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACGTGATAGAGA 769 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 604 TTTTCTTGTTTGTACAAAATGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGA 663 Query 770 AACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 829 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 AACCGGGTCATCTTCTTCCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 723 Query 830 TTCAGAAGACGATAGGAACCAAGAT---ACATGTGGCCTGCAAGACATTGGTGGTCATAT 886 ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 724 TTCGGAAGACGATAGGAACCAAGATACAACATGTGGCCTGCAAGACTTTGGTGGTCATAT 783 Query 887 AATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 946 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 784 AATGAAAATTCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 843 Query 947 TGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCACTTTTCCTTTTGCAAGG 1006 |||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||| Sbjct 844 TGAAGCTGCTAAGTATATACCTGTCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGG 903 Query 1007 CGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCTACTGCTGCGTGG 1066 |||||||||||||||||||||||||||| |||||||||||||||||||| | |||| || Sbjct 904 CGTTGGTGTTCTATTTGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGG 963 Query 1067 CGAAGATGATA-CAGGATTATATTTTAGA-TTTCTATCCAGAGCACATGATTGCTTGGGT 1124 |||||||| | ||||||||||||||||| |||| ||| | ||| ||||||||||||||| Sbjct 964 TGAAGATGA-AGCAGGATTATATTTTAGATTTTC-ATCGACAGCCCATGATTGCTTGGGT 1021 Query 1125 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1081 Query 1185 GAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTTCTGTGGTCATCCG 1244 ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1082 GAGCAAGCTCGACTATACTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCT 1141 Query 1245 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGTGTGGAGACTTCAA 1304 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1142 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAA 1201 Query 1305 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTG 1364 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1202 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTG 1261 Query 1365 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1321 Query 1425 CCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTC 1484 |||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||| Sbjct 1322 CCATGTAGACACCGAGTCCTCTGCAGAAACTGCTCAGACAAGTGTAAAAAATGTCCTTTC 1381 Query 1485 TGCCGTATAA-CTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1538 |||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 TGCCGTATAAAC-ATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1435 > Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1 Length=1792 Score = 1376 bits (745), Expect = 0.0 Identities = 1214/1438 (84%), Gaps = 42/1438 (3%) Strand=Plus/Plus Query 113 AGAGAGAAGAAAG-ACGATGAACTGTTGGAGAGTG-TTGAAATCCG-TACAAGCCTCGGT 169 ||||| |||| || | ||||| || |||||||| || || | || ||||||||| || Sbjct 127 AGAGATAAGAGAGAAAGATGAGTTGGAGGAGAGTGCTT-AAGT-CGATACAAGCCTTGGC 184 Query 170 GGCTCACT-GCTTTCTCTTCTCTTTCACGCTCGCT-TTGGTGCTCAAGCTCGATCACTCC 227 |||||| | |||| ||||||| |||||||||| | |||||||| ||||| |||||| || Sbjct 185 GGCTCA-TAGCTTACTCTTCTGTTTCACGCTC-TTATTGGTGCTTAAGCTTGATCACACC 242 Query 228 AT-TACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGC 286 | | ||| ||| |||||| | |||| | | || ||||||||||| ||||| |||||||| Sbjct 243 GTCT-CTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGC 301 Query 287 AAGGGGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATG 346 |||||| |||||||| ||||||||||| | ||||| |||||||||||||||||||| || Sbjct 302 AAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCCTTG 361 Query 347 TCATGCTATTGTCTCAACACCGTTGCTTA-TAGCTTTCGAATTACTCCTCTGTGTATACC 405 |||||| ||||| | |||||||||| || |||| |||||||||||||||||| |||||| Sbjct 362 CCATGCTGTTGTCGCGACACCGTTGC-TAGTAGCATTCGAATTACTCCTCTGTATATACC 420 Query 406 TCGAGACTGCATATGCT-GATTCGCCGCCAGCTGTGAGCT-TGAAGATTGTATTTCTCCC 463 |||||| | | |||||| | || ||| ||||||||||| | ||||||||| |||| | || Sbjct 421 TCGAGAGTTCTTATGCTCG-TTGGCCACCAGCTGTGAG-TCTGAAGATTGCATTTGTACC 478 Query 464 TTTATTGGCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGAT 523 |||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| |||| Sbjct 479 GTTATTGGCATTTGAATTAACGATACTGGTGGACAATTTGAGAATGTGTCGAGCATTGAT 538 Query 524 GCCTGGAGATGAAGAGAGCGTGAA-TGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCT 582 ||| || || || || ||| | || |||||| ||| ||||||| || ||||||||||||| Sbjct 539 GCCAGGCGACGACGACAGCAT-AACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 597 Query 583 GGGTTGCGATCTCCATGGTGTTC-TTTCTCGCTGCTACAG-TCTTTACCCTCCTTAAGCT 640 ||||||| || |||||||||||| | | |||||||| | | ||||||||||| || || Sbjct 598 GGGTTGCAATTTCCATGGTGTTCACGT-TGGCTGCTAC-GTTTTTTACCCTCCTAAAACT 655 Query 641 GTCTGGCGATGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGA 700 ||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| || || Sbjct 656 TTCTGGCGATGTAGTTGCTCTTGGATGGTGGGATTTATTCATAAATTTTGGAATTGCCGA 715 Query 701 GTGCTTTGCGTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACG 760 ||||||||| ||||||||||| ||||||||||| || ||||| || |||||||||||||| Sbjct 716 GTGCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAACCCAGTAATCCATAGAAGCTCACG 775 Query 761 TGATAGAGAAACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCT 820 || ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 776 TGCCCGAGAAACCGGGTCATCTTCTACCACTATCAGATATCTTGACTGGAACAGTGGCCT 835 Query 821 TGGGGTTTTTTCAGAAGACGATAGGAACCAAGATACAT-GT--GGCCTGCAAGACATTGG 877 || |||| | ||||||| |||||| ||||||||| || || || ||||||| ||||| Sbjct 836 TGTGGTTGCTCCAGAAGAGGATAGGCACCAAGATAGATGGTGCGGTTTGCAAGATATTGG 895 Query 878 TGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGA 937 ||||||||| | ||||| ||| | |||||||||||||| || ||||||||| ||||||| Sbjct 896 TGGTCATATGTTAAAAATTCCCGTTATTGTATTTCAAGTTGTTCTTTGCATGTATCTAGA 955 Query 938 GGGGACTCCTG-AAGCTGCTAAGTCTATAT-C-TGTCCCTGTCCTGTTTTCTCCACTTTT 994 ||||||||||| ||| |||||| ||||| | | ||| | | || || |||||||| || Sbjct 956 GGGGACTCCTGAAAG-AGCTAAGGATATATCCAT-TCCAT-TACTCTTCTCTCCACTATT 1012 Query 995 CCTTTTGCAAGGCGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCT 1054 ||| ||||||||| | |||||||| ||||||||||||||||| ||||||||| | ||||| Sbjct 1013 CCTATTGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCATAGAGAAGATCGTTCT 1072 Query 1055 AC-TGCTGCGTGGCGAAGATGATACAGGATTATATTTTAGA-TTTCTATCCAGAGCACAT 1112 | | ||||| || |||| || | ||||||| ||||||||| |||| ||| || || ||| Sbjct 1073 -CTTACTGCGCGGGGAAGCTGGTCCAGGATTGTATTTTAGATTTTC-ATCAAGTGCCCAT 1130 Query 1113 GATTGCTTGGG-TTTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGA 1171 ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| ||||| || Sbjct 1131 GATTGCTTGGGATTT-TTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCGATTGACGA 1189 Query 1172 AGGAAGCCGGGAGGAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTT 1231 ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| || Sbjct 1190 AGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATT 1249 Query 1232 CTGTGGTCATCCGCCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGT 1291 | |||||||||||||||| |||||||||||||||| ||| |||| ||||| || ||||| Sbjct 1250 CAGTGGTCATCCGCCTGAGGTAGTCAAGAAAATGCCAAAGGAAGATCTTGCTGAAGAGGT 1309 Query 1292 GTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGA 1351 |||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 1310 ATGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAACAAGA 1369 Query 1352 ATATGAGAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAG 1411 |||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||| Sbjct 1370 ATATGAAAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGAAATCAG 1429 Query 1412 TGTTG-TACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTA 1470 | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1430 T-TTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAGTCTGTGCAGACAAGTGTA 1488 Query 1471 AAAAATGCCCCTTCTGCCGTATA-ACTATCGAAGAGCGGCTCCCCGTATATGATGTTT 1527 || ||||| | || |||||| || || ||| | || || | ||||| || |||| Sbjct 1489 CAACGTGCCCAATATGTCGTATAGAC-ATTGAAAAACGACTATCTGTATACGACGTTT 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68524350755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5