BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73990.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476539 jgi|Araly1|476539|fgenesh2_kg.2__1669__AT1G73990.1 3482 0.0
> Ahg476539 jgi|Araly1|476539|fgenesh2_kg.2__1669__AT1G73990.1
Length=2085
Score = 3482 bits (1885), Expect = 0.0
Identities = 2021/2088 (97%), Gaps = 3/2088 (0%)
Strand=Plus/Plus
Query 19 GAGAGAGAGAAACAATGGCGAAGCTACTTCTTCTTCACGCGCCTCATGTAATACCTAGGT 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAAACAATGGCGAAGCTACTTCTTCTTCACGCGCCTCATGTAATACCTAGGT 60
Query 79 TTAGCAGCAGTAGTAGTAGATCACTGGTCTCCGCAGCGGCTTTATACAGAAGACCTCTCC 138
|||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 TTAGCAGCAGTAGTAG--G-TCACTGGTCTCAGCAGCGGCTTTATACCGAAGACCTCTCC 117
Query 139 TCGTGAATCCCCAATTTTCCCATATCGGACCTCGTCTTCATTCTCCGTACAATCGGAGAT 198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 118 TCGTGAATCCCCAATTTTCCCATATCGGACCTCGTCTTCGCTCTCCGTACAATCGGCGAT 177
Query 199 TCTCGGCTCGAGCCTTCGACGATTCACCTGCTTCCTCGGCGGAGATGGAGAAAGAGAAAC 258
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 178 TCTCGGCTCGTGCCTTCGACGATTCACCTGCTTCCTCGACGGAGATGGAGAAAGAGAAGC 237
Query 259 AGGAACAGCTGCTGGATGGAGTTTCTGGGAAAAAAGATGAGGACTATCCGACCGGAGAAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGGAACAGCTGCTGGATGGAGTTTCTGGGAAAAAAGATGAGGACTATCCGACCGGAGAAA 297
Query 319 TGGAGTATGAGAATAGGAACGCGTGGGAGATTTTTGTTGTGAAGTTTCGGATGTTATTTG 378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 TGGAGTATGAGAATAGGAACGCGTGGGAGATTTTTGTTGTGAAGTTGCGGATGTTATTTG 357
Query 379 CTTATCCATGGCAGCGTGTTCGTAAGGGAAGCGTCTTGACCATGACATTGCGCGGCCAGA 438
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTATCCATGGCAGCGCGTTCGCAAGGGAAGCGTCTTGACCATGACATTGCGCGGCCAGA 417
Query 439 TCTCTGATCAGCTAAAGAGCCGTTTCAATTCTGGGCTTTCTCTGCCTCAACTCTCAGAAA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCTGATCAGCTAAAGAGCCGTTTCAATTCTGGGCTTTCTCTGCCTCAACTCTCAGAAA 477
Query 499 ATTTTGTGAAAGCGGCATATGATCCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTT 558
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 ATTTTGTGAAAGCGGCATATGATCCTCGTATAGCTGGAGTCTACCTTCACATTGATCCTT 537
Query 559 TGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAAT 618
||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||
Sbjct 538 TGAGTTGTGGGTGGGGAAAGGTTGAAGAACTTCGAAGGCATATATTGGATTTTAAGAAAT 597
Query 619 CAGGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGGAGTACTATCTTGGAT 678
||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 598 CAGGTAAATTCATTGTTGGATATATCAGCATTTGTGGACTAAAGGAATTTTATCTTGGAT 657
Query 679 GTGCATGCAACGAGCTCTTTGCCCCACCTAGTGCCTATTCCTTTCTGTATGGTTTGACTG 738
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GTGCATGCAACGAGCTCTATGCCCCACCTTGTGCCTATTCCTTTCTGTATGGTTTGACTG 717
Query 739 TTCAAGCATCTTTTCTTGGCGGTGTCTTCGAAAAAGTGGGGATTGAACCTCAAGTACAAA 798
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TTCAAGCATCTTTTCTTGGAGGTGTCTTCGAGAAAGTGGGGATTGAACCTCAAGTACAAA 777
Query 799 GGATTGGAAAATACAAAAGTGCTGGAGATCAGCTTTCTCGCAAAAGTATATCTGAGGAAA 858
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 778 GGATTGGAAAATACAAAAGTGCTGGAGATCAGCTTTCCCGAAAAAATATATCTGAGGAAA 837
Query 859 ATTATGAGATGCTGAGTGTGCTTCTTGATAACATATATTCAAATTGGCTGGATGGTGTTT 918
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 ATTATGAGATGCTGAGTGTGCTTCTTGATAACATATATGCAAATTGGCTGGATGGTGTTT 897
Query 919 CTGACGCAACAGGGAAAAAGCGAGAAGATGTTGAAAATTTCATCAATCAAGGAGTTTACG 978
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTGACTCAACAGGAAAAAAGCGAGAAGATGTTGAAAATTTCATCAATCAAGGAGTTTACG 957
Query 979 AAATCGAAAAGCTCAAGGAAGCGGGGCTGATAAAGGATATTCGCTATGATGATGAGGTTA 1038
||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 958 AAATCGAAAAGCTAAAGGAAGAGGGGCTGATAAAGGATATTCGATATGATGATGAGGTTA 1017
Query 1039 TAACGATGCTGAAAGAGAGGCTTGGAGTCGAGAAAGACAAAAAGCTTCCTACTGTTGATT 1098
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TAGCGATGCTGAAAGAGAGGCTTGGAGTCGAAAAAGACAAAAAGCTTCCTACTGTTGATT 1077
Query 1099 ACAAGAAATACTCAGGTGTTAAGAAGTGGACTCTTGGTCTAACTGGCGGCCGAGACCAAA 1158
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1078 ACAAGAAATACTCAGGTGTTAAGAAGTGGACTCTTGGTCTAAGTGGCGGTCGAGACCAAA 1137
Query 1159 TAGCTATTATTAGAGCAGGGGGAAGCATTTCTCGGGTTAAGGGTCCATTAAGCACTCCTG 1218
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 TAGCTATTATTAGAGCAGGGGGAAGCATTTCTCGGGTTAAGGGTCCGCTAAGCACTCCTG 1197
Query 1219 GTTCAGCTATCATAGCAGAACAACTAATTGAGAAGATCCGCAGTGTTAGAGAGTCCAAAA 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTTCAGCTATCATAGCAGAACAACTAATTGAGAAGATCCGCAGTGTTAGAGAGTCCAAAA 1257
Query 1279 AATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGTGATGCTCTCGCTTCTGATT 1338
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1258 AATATAAGGCTGCCATCATCCGAATTGACAGTCCAGGAGGCGATGCTCTCGCTTCTGATT 1317
Query 1339 TAATGTGGAGGGAGATCAAACTACTGGCTGAAACAAAACCCGTCATTGCGTCAATGTCAG 1398
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct 1318 TAATGTGGAGGGAGATCAAACTACTGGCTGAAAAAAAACCTGTCATCGCGTCAATGTCAG 1377
Query 1399 ATGTGGCAGCAAGTGGAGGCTACTACATGGCAATGGCTGCAAACGCCATTGTTGCTGAAA 1458
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 ATGTGGCAGCAAGTGGAGGCTACTACATGGCAATGGCTGCAAACACCATTGTTGCTGAAA 1437
Query 1459 ATTTGACATTAACTGGCTCAATTGGAGTTGTCACTGCAAGATTTACCTTGGCCAAACTAT 1518
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 ATTTGACATTAACTGGCTCAATTGGAGTTGTCACAGCAAGATTTACCTTGGCCAAACTAT 1497
Query 1519 ATGAAAAGATTGGCTTCAACAAGGAAACTATATCTAGAGGAAAATATGCTGAGCTTCTGG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGAAAAGATTGGCTTCAACAAGGAAACTATATCTAGAGGAAAATATGCTGAGCTTCTGG 1557
Query 1579 GGGCTGAGGAAAGACCTTTAAAGCCAGAGGAAGCAGAACTGTTTGAGAAGTCTGCACAGC 1638
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1558 GGGCTGAGGAAAGACCTTTTAAGCCAGAGGAAGCAGAACTGTTTGAGAAGTCTGCACGGC 1617
Query 1639 ATGCATACCAGCTTTTCCGAGATAAAGCAGCCTTATCAAGATCGATGCCTGTCGACAAGA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ATGCATACCAGCTTTTCCGAGATAAAGCAGCCTTATCAAGATCGATGCCTGTCGACAAGA 1677
Query 1699 TGGAAGAAGTTGCACAGGGCAGAGTGTGGACCGGTAAGGATGCTCATTCTCGTGGTCTAA 1758
|||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1678 TGGAAGAAGTTGCACAAGGCAGAGTCTGGACCGGTAGGGATGCTCATTCTCGTGGTCTAG 1737
Query 1759 TAGATGCTGTCGGTGGGCTGTCCCGAGCTATAGCCATTGCTAAGCAGAAAGCTAATATTC 1818
|||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1738 TAGATGCTCTCGGCGGGCTGTCCCGAGCTATAGCAATCGCTAAGCAGAAAGCTAATATTC 1797
Query 1819 CTCTTAATAAGAAGGTAACTCTTGTTGAGCTTTCAAGACCTTCTACATCACTACCAGATA 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CTCTTAATAAGAAGGTAACTCTTGTTGAGCTTTCAAGACCTTCTACATCACTACCAGATA 1857
Query 1879 TCTTAAGCGGTATAGGAAGCTCGGTGATTGGAGTTGACAGAACATTAAAAGGACTGCTCG 1938
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1858 TCTTGAGCGGTATAGGAAGCTCGGTGATTGGAGTTGACAGAACATTAAAAGAACTGCTCG 1917
Query 1939 ACGAATTAACAATCACCGAGGGAGTTCAAGCTCGTATGGACGGAATCATGTTTCAGCAAC 1998
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1918 ATGAATTAACAATCACCGAGGGAGTTCAAGCTCGAATGGACGGGATCATGTTTCAGCAAC 1977
Query 1999 TTGGCCGAGATTCTTTAGCAACTCCCATCATTGATATGCTTAAAGATTACCTCAGCTCTC 2058
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1978 TTGGCCGAGATTCTTTAGCAACTCCCATCATTGATTTGCTTAAAGATTACCTCAGCTCTC 2037
Query 2059 TCAGATGATTCCGACACTAGTACTGAATCTCATTTGAATGAAACTAAA 2106
|| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2038 TCCGATGATTCCGACACTATTACAGAATCTCATTTGAATGAAACTAAA 2085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5