BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74020.1 Length=1206 Score E Sequences producing significant alignments: (Bits) Value Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1 1615 0.0 > Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1 Length=1084 Score = 1615 bits (874), Expect = 0.0 Identities = 997/1058 (94%), Gaps = 2/1058 (0%) Strand=Plus/Plus Query 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCTCCAT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCCCCAT 60 Query 61 GATttctcttcttcttcttctctctcttTCATCGGCGGTTTTCTCCGATGACGCTTCTTT 120 ||||| |||||||||||||||||||||||| |||| ||||||||||||||| || ||||| Sbjct 61 GATTTTTCTTCTTCTTCTTCTCTCTCTTTCCTCGGTGGTTTTCTCCGATGATGCGTCTTT 120 Query 121 CCAGAAACTTCCGGTGCCGGAAACTAGGTCAGGTCCC-GAAGCTTTCGCTTTTGATTCCA 179 ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||| Sbjct 121 CCAGAAACTTCCGGTGCCGGAAAGTAGGTCAGG-CCCTGAAGCTTTCGCCTTTGATTCCA 179 Query 180 CCGGTAAAGGGTTCTATACCGGTGTCTCCGGTGGTAAAATCCTCAAGTACCTCCCCGAGA 239 |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 180 CCGGAAAAGGGTTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGA 239 Query 240 CGGGTTATGTTGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGTA 299 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 240 CGGGTTATGTCGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGAA 299 Query 300 CTATTGGAACGGCTTTAGCCGGACGCTGTGGTCGACCAGCAGGAATAGCATTCAACGAGA 359 |||||||||||||||||| ||| | |||||| ||||||| |||||||| |||||||||| Sbjct 300 ATATTGGAACGGCTTTAGCAGGAAGATGTGGTAGACCAGCGGGAATAGCGTTCAACGAGA 359 Query 360 AAACAGGTGATCTTTACGTCGCCGATGCTCCGTTGGGTCTTCACGTTATTTCTCCCGCCG 419 ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| | Sbjct 360 AAACAGGTGATCTCTACGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTCCCGCAG 419 Query 420 GTGGTTTGGCTACGAAGATCACCGACAGTGTTGACGGAAAGCCTTTCAAGTTTCTTGACG 479 ||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||| Sbjct 420 GTGGTTTGGCTACAAAGATCGCCGATAGTGTTGACGGAAAGCCTTTCAATTTTCTTGACG 479 Query 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCT 539 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTCACGCTTCA 539 Query 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599 Query 600 ACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659 |||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||||||| Sbjct 600 ACGACCCATCAACCAAAGTTGTGACCGTATTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659 Query 660 GTGCAGTGAGCTCAGATGGTTCGTTTGTGCTGGTTAGTCAGTTCACAAAAAGTAACATCA 719 |||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||| Sbjct 660 GTGCAGTGAGCTCAGATGGTTCATTCGTGTTGGTTAGTCAGTTCACAAAGAGTAACATCA 719 Query 720 AGAGGTATTGGATCAAGGGACCCAAAGCTGGTTCTTCTGAAGACTTCACCAACTCAGTCT 779 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 720 AGAGGTATTGGATCAAGGGACCAAAAGCTGGTTCTTCTGAAGACTTCACCAACTCGGTCT 779 Query 780 CAAACCCTGACAATATCAAAAGAATTGGCTCTACTGGAAACTTTTGGGTCGCTTCAGTGG 839 ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 780 CAAACCCTGACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCTTCCGTGG 839 Query 840 TGAACAAGATCATCGTACCTACGAACCCATCAGCAGTCAAAGTTAACTCTAATGGTGAAG 899 |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| Sbjct 840 TGAACAAGATCATCGTGCCTACGAACCCATCAGCAGTCAAAGTAAACTCTGATGGTGAAG 899 Query 900 TTCTTCAAACAATTCCTCTCAAAGATAAATTTGGAGACACTCTGCTCAGCGAAGTCAACG 959 | ||||| ||||| ||||||||||||||||||||||||||| |||| || |||||||||| Sbjct 900 TGCTTCAGACAATACCTCTCAAAGATAAATTTGGAGACACTTTGCTTAGTGAAGTCAACG 959 Query 960 AATTCGAGGGCAATTTATATATAGGAACTCTCACCGGACCATTTGCTGGAATTCTTAAGC 1019 |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 960 AATTCGAGGGCAATCTATATATCGGAACTCTCACAGGACCATTTGCTGGAATTCTTAAGC 1019 Query 1020 TCGAAAAGGGTTCTTGTCCTGCCACTTAGATCTCTTAT 1057 ||||||| |||||||| ||||||||||||||||||||| Sbjct 1020 TCGAAAATGGTTCTTGCCCTGCCACTTAGATCTCTTAT 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45023164977 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5