BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74070.1 Length=1330 Score E Sequences producing significant alignments: (Bits) Value Ahg476549 jgi|Araly1|476549|fgenesh2_kg.2__1679__AT1G74070.1 1746 0.0 > Ahg476549 jgi|Araly1|476549|fgenesh2_kg.2__1679__AT1G74070.1 Length=1284 Score = 1746 bits (945), Expect = 0.0 Identities = 1138/1228 (93%), Gaps = 25/1228 (2%) Strand=Plus/Plus Query 1 ACGTTTGTGTGACATGAAAT--G-AAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 57 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 ACGTTTGTGTGACATGAAATGGGTGAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 60 Query 58 AGTTAATTATCTATCTCCCTCCACCAATGATGACAC--A--CAGT-TTCATCAGGTAGAC 112 || ||||||||||||| ||||||||||||| ||||| | || | |||||||||||||| Sbjct 61 AG-TAATTATCTATCTTCCTCCACCAATGA-GACACAGATTCA-TATTCATCAGGTAGAC 117 Query 113 AAAATGATGC-A--ACCCAATGCAAAACTTTTGTCCCCATCCGCTAAATTTCTACCGTCA 169 |||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 118 AAAATGATGCTACCACCCAATGCAAAACTTTTGTCCTCATCCGCAAAATTTCTACCGTCG 177 Query 170 CCTATAGAGCCACCGCAACACAACCGTAGAACCACCGTAGGAGCAC-CTCCGTCATTGGA 228 ||| |||||||||||||||||| |||||||| | ||| |||||| | ||||||| ||||| Sbjct 178 CCTGTAGAGCCACCGCAACACAGCCGTAGAATCGCCGGAGGAGC-CTCTCCGTCGTTGGA 236 Query 229 ACGAAACTGCAAATTATCGCGACGGAATCTTAGTAAATCCTCGTTGCTTCTACTCCTCAC 288 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 237 ACGAAACTGCAAATTATCGCGACGGAATCTAAGTAAATCCTCGTTGCTTCTACTCCTTAC 296 Query 289 CACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGC 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGA 356 Query 349 TAACCCTAATCTCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 408 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TAATCCTAATCCCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 416 Query 409 GTCAATCGACGGCGAACCAATCGGGAGGATCATAATCGGATTATACGGAGACGATGTACC 468 || |||||||| ||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct 417 ATCGATCGACGGAGAACCAATCGGAAGGATCGTAATCGGATTATACGGAGACGATGTGCC 476 Query 469 GGCGGGAACAGCTAGATTCAGTAGCATTGTAAGCGGGAAAGCTGGAATTACTTACCGGAG 528 ||||||||||||||| ||||| |||||||||||||||||||| ||||| | ||||||||| Sbjct 477 GGCGGGAACAGCTAGGTTCAGCAGCATTGTAAGCGGGAAAGCCGGAATAAGTTACCGGAG 536 Query 529 AAAAGATTTTGTGAAGATTATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 588 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AAAAGATTTTGTGAAGATCATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 596 Query 589 TGTCGATGCCGAGCGTGCCACCGCCGCGGTGGGGAGTCTCCAAAACCTAATTGAagagtg 648 ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 597 AGTCGACGCCGAGCGAGCCACCGCCGCGGTCGGGAGTCTTCAAAACCTAATTGAAGAGTG 656 Query 649 ggagagagggaagagaggagagaTATGTAATGTAAATAAGGCGGGAAGCGTTGGAATCGT 708 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 657 GGAGAGAGGGAAGAGAGGAGAGATATGCAATGTAAATAAGGCGGGAAGTGTTGGAATCGT 716 Query 709 GGTGAGAGATCCGTCGAAACCGCCGCCGAAGACGAAGCTTGTGGCAAGGAATGGGAAGCT 768 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 717 GGTGAGAGATCCGTCGAAGCCGCCGCCGAAGACGAAGCTTGTGGCGAGGAATGGGAAGCT 776 Query 769 TGTGGTCGAAGAAGAGGTAATTGCGGTGGGGCCAAACGGAACGGAGTTTGTTATAACGGC 828 | ||| ||||||||||| || || || || || ||||||||||||||||||||||| || Sbjct 777 TCAGGTGGAAGAAGAGGTTATAGCCGTAGGACCGAACGGAACGGAGTTTGTTATAACTGC 836 Query 829 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAAGTTTTGGAAGGAAT 888 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 837 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAGGTTTTGGAAGGAAT 896 Query 889 GGGAGTTGTTGAGAAGATGAGAGAAGTGAAGACTGTGAGGGATAACACTTCATCTCCTTA 948 ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 897 GGGAGTTGTGGAGAAGATGAGACAAGTGAAGACTGTTAGGGATAACACTTCATCTCCTTA 956 Query 949 TTTCAGGGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1008 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TTTCAGAGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1016 Query 1009 CCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1068 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1076 Query 1069 AATGAGCTCATTGTTTGTTGGCAACGTTTTTTGTGTGCTATG-CAAGACAACTTAAACTG 1127 |||||||||| |||||||||||||||||||| | || | | ||| ||| ||| ||||| Sbjct 1077 AATGAGCTCAC-GTTTGTTGGCAACGTTTTTTTTTTGGTGTAACAA-ACAGCTTCAACTG 1134 Query 1128 TTAAGCACATCAACCACATGGAAA-GATTGCAGCCATGGTG--G-T--TTGGTGGAACTA 1181 || ||||||||||||||||||||| |||||||||||||||| | | || ||||||||| Sbjct 1135 TTTAGCACATCAACCACATGGAAAAGATTGCAGCCATGGTGATGGTGGTTTGTGGAACTA 1194 Query 1182 CATTATCAATTGAGTAATTATAAGCGTG 1209 |||||||||||||| ||||||||||||| Sbjct 1195 CATTATCAATTGAGAAATTATAAGCGTG 1222 Score = 99.0 bits (53), Expect = 8e-20 Identities = 60/63 (95%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 1269 GCTTGGGCCTTAACTGGATATTAAAGAGT-GTAATAAACAATTTCTACTATTTCTATTTG 1327 ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 1223 GCTTGGGCCTTAACTGGATATTAAAGAGTTG-AATAAACAAATTCTACTATTTCTATTTG 1281 Query 1328 CCC 1330 ||| Sbjct 1282 CCC 1284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49750406685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5