BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74210.1 Length=1417 Score E Sequences producing significant alignments: (Bits) Value Ahg909043 jgi|Araly1|909043|Al_scaffold_0002_2124 1877 0.0 > Ahg909043 jgi|Araly1|909043|Al_scaffold_0002_2124 Length=1176 Score = 1877 bits (1016), Expect = 0.0 Identities = 1126/1179 (96%), Gaps = 7/1179 (1%) Strand=Plus/Plus Query 83 ATGATTCTTACAAGATGCTTACCCTTGATATGGCTATCTCTACTTACTGTGTGTGCTGCT 142 ||||||||| |||||||||| |||||||| ||||||||||||||||| |||||| |||| Sbjct 1 ATGATTCTTGCAAGATGCTTGCCCTTGATTTGGCTATCTCTACTTAC--TGTGTG-TGCT 57 Query 143 GGGAGGACATTGCACCCTCTCCCTGTTAAAGGACCCAAAACTGTCAAGCTTCAACTTCAG 202 ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct 58 GGGAGGACATTGCACCCTCTCCCTGGTAAAGGACCCAAAAGTGTCAACCTTCAACTTCAG 117 Query 203 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 177 Query 263 ACAGCTGCATACTTGAAAGCAATTGAAGAAGGCACAGACTTCATAGAAACAGATATCTTA 322 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 178 ACTGCTGCATACTTGAAAGCAATTGAAGAAGGTACAGACTTCATAGAAACAGATATCTTA 237 Query 323 TCATCCAAAGATGGTGTGCTCATATGTTTCCATGATTGTATTCTCGACGAAACAACCAAT 382 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || Sbjct 238 TCATCCAAAGATGGTGTGCTTATATGTTTCCATGATTGTATCCTCGACGAAACAACCGAT 297 Query 383 GTTGCGAGCCACAAGGAGTTTGCAGATCGTAAAAGGACATATGATGTCCAAGGATTCAAC 442 ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 298 GTTGCAAGCCACAAGGAGTTTGCTGATCGTAAAAGGACATATGATGTGCAAGGATTCAAC 357 Query 443 ATTACTGGCTTTTTCACTTTTGATTTTACACTTAAAGAACTAAAGCAACTACGTATAAAG 502 || ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 358 ATCACTGGCTTTTTCACTTTTGATTTTACACTCAAAGAACTAAAGCAACTACGTACAAAA 417 Query 503 CAGCGATATGCTTTTCGGGATCAGCAATACAACGGAATGTACCCTATCATTACATTTGAG 562 ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 418 CAGCGATATACTTTTCGGGACCAGCAATACAACGGAATGTATCCTATCATTACATTTGAG 477 Query 563 GAATTTC-TTACCATTGCTCGGGATGCTCCAAGAGTTGTTGGAATATATCCTGAGATTAA 621 ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 478 GAA-TTCATTGCCATTGCTCGGGATGCTCCAAGAGTTGTTGGGATATATCCTGAGATAAA 536 Query 622 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAAATTTGAGGATAA 681 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 537 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAGATTTGAGGATAA 596 Query 682 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCGTATTTGTCCAAGAAGTGGTT 741 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 597 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCATATTTGTCCAAGAAGTGGTT 656 Query 742 GAAAAAACCACTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAACTT 801 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 657 GAAAAAACCATTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAATTT 716 Query 802 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCAACGCAAGACACTAA 861 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 717 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCGACGCAAGACACTAA 776 Query 862 CCAGACATATGCAGAGATCACATCAGATGCGTATTTCGAATACATCAAGCAATATGTTGT 921 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 777 CCAGACATACGCAGAGATCACATCAGATGCGTATTTCGACTACATCAAGCAATATGTTGT 836 Query 922 GGGTATCGGACCATGGAAGGATACAATTGTTCCGGTAAACAACAACTATGTGCTAGCCCC 981 ||||||||||||||||||||||||||| ||||| ||||| | ||||||| |||||||||| Sbjct 837 GGGTATCGGACCATGGAAGGATACAATAGTTCCAGTAAATAGCAACTATATGCTAGCCCC 896 Query 982 CACAGATTTGGTCAAAAGAGCTCACGCACACAATCTGCAGGTGCATCCCTATACGTACAG 1041 |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 897 CACAGATTTGGTCAAAAGAGCTCACGCACATAATCTACAGGTGCATCCATATACGTACAG 956 Query 1042 GAATGAACACGAATTCTTACACTATAACTTTAGCCAAGACCCGTATAAGGAGTACGACTA 1101 |||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||| Sbjct 957 GAATGAACACGAATACTTACACTTTAACTTTAGCCAAGACCCATATAAGGAATACGACTA 1016 Query 1102 CTGGATCAATGAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1161 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CTGGATCAATAAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1076 Query 1162 CTTTCAAGAATGGACATCTCCATTACCTGATACCTCCAAGTCTCCACGACAGCTTCTTAG 1221 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | Sbjct 1077 CTTTCAAGAATGGACATCTCCATTACCTGATAGCTCCAAGTCTCCACGACAGCTT-TTGG 1135 Query 1222 -TCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1259 |||||||||||||||||||||||||||||||||||||| Sbjct 1136 GTCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1174 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52983530795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5