BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74630.1 Length=1932 Score E Sequences producing significant alignments: (Bits) Value Ahg339650 jgi|Araly1|339650|fgenesh1_pg.C_scaffold_2001749 2839 0.0 > Ahg339650 jgi|Araly1|339650|fgenesh1_pg.C_scaffold_2001749 Length=3666 Score = 2839 bits (1537), Expect = 0.0 Identities = 1782/1900 (94%), Gaps = 17/1900 (1%) Strand=Plus/Plus Query 37 AATAGCTGCAAGAACTTAAGAGCTTTAACACAAATACATGGCTTGTTTATTAAATACGGC 96 |||| ||||||||||||||||||| |||| ||||| |||||||| ||||| |||| |||| Sbjct 539 AATA-CTGCAAGAACTTAAGAGCTCTAACCCAAATCCATGGCTTCTTTATCAAATCCGGC 597 Query 97 GTCGACACTGATTCTTACTTCACT-GGAAAACTTATCCTACATTGTGCGATTTCTATATC 155 || ||||||||||||||||||| | ||||| ||||||||||||||||||||||| || || Sbjct 598 GTTGACACTGATTCTTACTTCA-TCGGAAAGCTTATCCTACATTGTGCGATTTCCATTTC 656 Query 156 CGACGCTTTACCTTACGCTCGTCGTCTCTTGCTCTGTTTTCCTGAACCTGATGCGTTTAT 215 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 657 CGACGCTTTACCTTACGCTCGCCGTCTCTTGCTCTGTTTTCCTGAACCTGATGCGTTTAT 716 Query 216 GTTCAACACTCTCGTCCGAGGCTACTCTGAATCCGATGAGCCGCACAATTCCGTTGCGGT 275 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 717 GTTCAACACTCTCGTCCGAGGCTACTCTGAATCCGATGAGCCGCACAATTCCGTTGCCGT 776 Query 276 GTTTGTTGAAATGATGAGGAAAGGTTTCGTCTTTCCGGATAGTTTCTCCTTCGCGTTTGT 335 |||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| Sbjct 777 GTTTGTGGAAATGATGAGGAAAGGTTTCATTTTTCCTGATAGCTTCTCCTTCGCGTTTGT 836 Query 336 CATCAAGGCGGTGGAGAATTTCCGGTCTTTAAGAACTGGGTTTCAGATGCATTGTCAAGC 395 ||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 837 TGTCAAGGCGGCGGCGAATTTCCGGTCTTTAAGAACTGGATTTCAGATGCATTGTCAAGC 896 Query 396 TTT-AAAGCATGGGCTTGAGTCGCATTTGTTTGTTGGC-ACTACCTTGATTGGTATGTAT 453 ||| ||| ||||||||||| || |||||||||||| || ||||||||||| ||||||||| Sbjct 897 TTTGAAA-CATGGGCTTGATTCACATTTGTTTGTT-GCTACTACCTTGATCGGTATGTAT 954 Query 454 GGGGGATGTGGGTGTGTTGAGTTTGCTCGCAAGGTGTTCGATGAAATGCATCAACCGAAT 513 |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 955 GGGGAATGTGGGTGTATTGAGTTTGCTCGCAAGGTGTTCGATGAAATGCCTCAACCGAAT 1014 Query 514 TTGGTTGCTTGGAATGCTGTGATCACCGCCTGTTTTAGGGGGAATGATGTTGCGGGAGCG 573 |||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||| ||| Sbjct 1015 TTGGTTGCGTGGAATGCTGTGGTCACGGCCTGTTTCAGGGGGAATGATGTTTCGGGCGCG 1074 Query 574 AGGGAAATCTTCGATAAGATGCTGGTAAGGAATCACACGTCGTGGAACGTGATGCTTGCT 633 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 AGGGAAATCTTTGATAAGATGCTGGTAAGGAATCACACGTCGTGGAACGTGATGCTTGCT 1134 Query 634 GGGTACATTAAAGCTGGGGAGCTTGAGAGTGCTAAACGGATCTTCTCGGAAATGCCTCAC 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GGGTACATTAAAGCTGGGGAGCTTGAGAGTGCTAAACGGATCTTCTCGGAAATGCCTCAC 1194 Query 694 AGAGATGATGTCTCCTGGAGTACTATGATTGTTGG-TATTGCTCATAATGGAAGTTTCAA 752 |||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||| Sbjct 1195 AGAGATGATGTCTCTTGGAGCACTATGATTGTTGGGTAT-GCTCATAATGGAAGTTTCAA 1253 Query 753 TGAGTCTTTCTTGTACTTCAGGGAGTTAC-AACGAGCGGGAATGAGTCCAAATGAGGTAA 811 ||||||||||| ||| || |||||||||| || |||||| |||||| ||||| ||||| | Sbjct 1254 TGAGTCTTTCTCGTATTTTAGGGAGTTACTAA-GAGCGGAAATGAGACCAAACGAGGTGA 1312 Query 812 GTCTGACCGGAGTTCTCTCTGCCTGTTCACAATCTGGGTCATTTGAGTTTGGGAAGATAT 871 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1313 GTCTCACCGGAGTTCTCTCTGCCTGTTCACAATCTGGGGCATTTGAGTTTGGGAAGACAT 1372 Query 872 TACACGGGTTTGTAGAGAAAGCAGGGTATAGTTGGATAGTTTCGGTGAACAATGCGCTTA 931 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1373 TACACGGGTTTGTAGAGAAATCAGGGTATAGTTGGATAGTTTCGGTGAACAATGCGCTTA 1432 Query 932 TTGATATGTATTCTAGGTGTGGTAATGTCCCAATGGCTAGGTTAGTCTTTGAAGGTATGC 991 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1433 TTGATATGTATTCTAGATGTGGTAATGTCCCAATGGCTAGATTAGTCTTTGAAGGTATGC 1492 Query 992 AAGAGAAGAGGTGTATTGTATCTTGGACATCAATGATAGCAGGCTTAGCTATGCATGGTC 1051 ||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1493 AAGAGAAGATGAGTATTGTATCTTGGACATCAATGATAGCGGGCTTAGCAATGCATGGTC 1552 Query 1052 AAGGAGAAGAAGCTGTTAGACTATTCAATGAAATGACCGCGTATGGTGTTACACCAGACG 1111 | |||||||||||| ||||| |||||||||||||||| | || |||||||| ||||||| Sbjct 1553 ACGGAGAAGAAGCTATTAGAATATTCAATGAAATGACTGAGTCTGGTGTTATGCCAGACG 1612 Query 1112 GGATATCTTTCATTTCACTTTTGCATGCTTGCAGTCATGCTGGACTGATTGAAGAAGGTG 1171 ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| Sbjct 1613 AGATATCTTTCATTTCGCTTTTGTATGCTTGCAGTCATGCTGGACTGATCAAAGAAGGTG 1672 Query 1172 AAGATTACTTTTCTGAGATGAAGAGAGTTTACCACATCGAACCAGAAATTGAACACTATG 1231 ||| |||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1673 AAGGTTACTTCTCTAAGATGAAGAGAGTCTACCACATCGAACCAGCAATTGAACACTATG 1732 Query 1232 GTTGCATGGTTGATTTATATGGCCGATCTGGAAAACTGCAAAAGGCTTAT-GATTTCATA 1290 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1733 GTTGCATGGTTGATTTATATGGCCGATCTGGAAAACTGCAAAAGGCTTATAG-TTTCATA 1791 Query 1291 TGCCAAATGCCAATTCCGCCAACTGCCATAGTATGGCGGACTCTTCTCGGGGCTTGCAGT 1350 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1792 TGCCAAATGCCAATTCCGCCAACTGCCATAGTGTGGCGGACTCTTCTCGGGGCTTGCAGT 1851 Query 1351 AGTCATGGGAATATCGAATTGGCAGAGCAAGTGAAACAAAGGCTTAATGAGCTTGACCCA 1410 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1852 AGTCATGGGAATATCGAACTGGCCGAGCAAGTGAAACAAAGGCTTAATGAGCTTGACCCA 1911 Query 1411 AATAACTCAGGGGATCTTGTACTTCTGTCGAATGCTTATGCAACTGCAGGTAAATGGAAG 1470 |||||||| ||||||||||| ||| ||||||||| |||||| |||||||||||||||||| Sbjct 1912 AATAACTCGGGGGATCTTGTTCTTTTGTCGAATGTTTATGCTACTGCAGGTAAATGGAAG 1971 Query 1471 GATGTTGCTTCTATCAGAAAGTCAATGATTGTCCAGAGAATCAAGAAGACAACTGCTTGG 1530 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1972 GATGTTGCTTCTATCAGAAAGTCAATGATTGTTCAGAGAATCAAGAAGATAACTGCTTGG 2031 Query 1531 AGCTTGGTTGAAGTTGGCAAAACCATGTACAAGTTCACTGCAGGCGAGAAAAAGAAGGGA 1590 |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| | Sbjct 2032 AGCTTGGTGGAAGTTGGCAAAACCATGTATAAGTTCACTGCATGCGAGAAAAAGAAGGAA 2091 Query 1591 ATCGATATAGAGGCTCACGAGAAGCTAAAAGAAATAATCTTGAGGCTTAAAGATGAAGCT 1650 | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 2092 ACCGATATAGAGGCTCACGAGAAGCTAAAAGAAATCATCTTGAGGCTTAGAGATGAAGCT 2151 Query 1651 GGATATACCCCAGAAGTAGCAAGTGCTTTATATGATGTAGAAGAGGAAGAAAAGGAGGAT 1710 || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2152 GGGTATGCCCCAGAAGTAGCAAGTGCTTTATATGATGTGGAAGAGGAAGAAAAGGAGGAT 2211 Query 1711 CAAGTGAGTAAACACAGTGAGAAGCTTGCACTTGCATTTGCTCTAGCTAGATTGTCC-AA 1769 || || |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 2212 CAGGTAAGTAAACACAGTGAGAAGCTTGCACTTGCATTTGCTCTAGCTAGATTG-CCTAA 2270 Query 1770 AGGAGCAAATATCAGGATAGTAAAGAATCTGAGAATTTGCAGAGATTGTCACGCTGTTAT 1829 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2271 AGGAGCAAATATCAGGATAGTAAAGAATCTGCGAATTTGCAGAGATTGTCACGCTGTTAT 2330 Query 1830 GAAGCTAACGTCGAAGGTTTATGGGGTAGAAATAT-TGGTCCGAGACAGAAATCGCTTTC 1888 |||||||||||||| ||| ||||| |||||||| | || ||||||||||||||||||| | Sbjct 2331 GAAGCTAACGTCGAGGGTCTATGGAGTAGAAAT-TGTGATCCGAGACAGAAATCGCTTCC 2389 Query 1889 ATTCATTTAAGGACGGTTCTTGCTCATGCCGTGACTACTG 1928 ||||||||||||||||||||||||||||| |||||||||| Sbjct 2390 ATTCATTTAAGGACGGTTCTTGCTCATGCGGTGACTACTG 2429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72600006970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5