BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74880.1 Length=788 Score E Sequences producing significant alignments: (Bits) Value Ahg476624 jgi|Araly1|476624|fgenesh2_kg.2__1754__AT1G74880.1 894 0.0 > Ahg476624 jgi|Araly1|476624|fgenesh2_kg.2__1754__AT1G74880.1 Length=618 Score = 894 bits (484), Expect = 0.0 Identities = 578/623 (93%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 1 GCGGTCTTATCCCGAAACTCCAAGAACACATAAttttttttCTTGGTGGTCTCTCCAATG 60 |||||||||||||||||||||||||||||| || |||| ||||||||||||||||| Sbjct 1 GCGGTCTTATCCCGAAACTCCAAGAACACAGAA--AAGTTTCGTGGTGGTCTCTCCAATG 58 Query 61 GCTTTCTCTGCGACTGTGTCTCAGCTTTCTTCTCTTTCAACCATCTCCTCTTCATTACCA 120 |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 59 GCTTTCTCAGCGACTCTGTCTCAGCTTTCTTCTCTTTCTACCATCTCCTCTTCATTACCA 118 Query 121 ATTTCTTCTAGAAGACTCCCTCATCGATCTCTTCCTCAATTCACAGTCAAAGCAGAAGCA 180 || ||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | Sbjct 119 CTTCCTTCTAGAAGATTCCCTCATCGATCTCTTCCTCAGTTCACAGTCAAAGCAGAGGTA 178 Query 181 GAGAAAGAGAAACAGAGCACACAGGGCAAGTCTGATGGGGAAGCATCACCAGCTGCAACC 240 ||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 179 GAGAAAGAGAAGCAGAGCACACAGGCCAAATCTGAAGGGGAAGCATCACCAGCTGCAACC 238 Query 241 AAAACCCCTAAAACCCTCCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATCGTT 300 |||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 AAAACCCCTAAAACTCTTCCCAAGAAACCGGTTTACTCGATGAAGAAGGGCCAAATAGTT 298 Query 301 CGTGTGGAAAAAGAGAAGTACCTCAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 299 CGTGTGGACAAAGAGAAGTACCTTAACAGCATCAATTACTTATCAGTTGGACATCCTCCT 358 Query 361 TTCTACAAAGGACTTGATTACATATACGAAGATCGCGGCGAGGTCTTGGACCTTCGTGTC 420 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 359 TTCTACAAAGGACTTGATTACATTTACGAAGATCGCGGGGAGGTCTTGGACCTTCGTGTC 418 Query 421 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGTATCCCCACCGCACCAGCTTGG 480 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 419 TTTGAGACAGGAGAGTATGCACTTGTTGGATGGGTTGGCATCCCCACCGCACCAGCTTGG 478 Query 481 CTCCCAACAGATATGCTCATCAAGTGTGAGAAACTTGTTTACGAGCGAATGTAGAGTCAA 540 || ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| | Sbjct 479 CTACCAACAGATATGCTCATCAAGAGTGAGAAACTTGTTTATGAACGAATGTAGAGTCCA 538 Query 541 GAAGG-TTCCAAGAAGAATCCTTTGGAATGCAACTGATATACCAAGGATTGTGT-T-AAG 597 | || |||||||||||||||||||||| ||||| |||| |||||| |||||| | ||| Sbjct 539 TA-GGCTTCCAAGAAGAATCCTTTGGAAAGCAACCGATA--CCAAGGGTTGTGTGTTAAG 595 Query 598 CTGAGATGAACGATAACAATGGC 620 |||||||||| ||||| |||||| Sbjct 596 CTGAGATGAATGATAAAAATGGC 618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29087785671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5