BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74910.1 Length=1969 Score E Sequences producing significant alignments: (Bits) Value Ahg926871 jgi|Araly1|926871|scaffold_202432.1 2444 0.0 > Ahg926871 jgi|Araly1|926871|scaffold_202432.1 Length=1461 Score = 2444 bits (1323), Expect = 0.0 Identities = 1418/1464 (97%), Gaps = 5/1464 (0%) Strand=Plus/Plus Query 293 AAAAGATCTGAGCTTTGAACATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 352 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2 AAAA-ATCTGAGCTTTGAAAATGGGGAGCTCAATGGAGGAGAAAGTGGTGGCTGTGATCA 60 Query 353 TGGTCGGTGGTCCAACCAAAGGCACTCGATTTCGGCCATTGTCGCTGAATATTCCAAAGC 412 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 61 TGGTCGGTGGTCCAACCAAAGGTACTCGGTTTCGGCCATTGTCGCTGAATATTCCAAAGC 120 Query 413 CTCTGTTTCCTATTGCGGGACAACCAATGGTGCATCATCCAATTTCAGCTTGTAAAAGAA 472 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 121 CTCTGTTTCCTATTGCGGGACAGCCAATGGTGCATCATCCTATTTCAGCTTGTAAAAGAA 180 Query 473 TTCCAAATTTAGCTCAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 532 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCCAAATTTAGCACAAATATATCTTGTTGGCTTCTATGAGGAAAGGGAATTTGCACTTT 240 Query 533 ATGTTTCAGCCATCTCTAATGAACTTAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 592 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 ATGTCTCAGCCATCTCTAATGAACTCAAAGTTCCTGTTAGATATCTGCGAGAAGACAAAC 300 Query 593 CACATGGTTCAGCTGGTGGGCTGTATCACTTTAGAAATCTTATTATGGAAGATAGTCCGT 652 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 301 CACATGGTTCAGCTGGTGGGCTCTATCACTTTAGAAATCTTATTATGGAAGATAGCCCGT 360 Query 653 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCCTTGCCCAAAATGCTCG 712 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 361 CTCATATCTTCCTGCTTAACTGTGATGTTTGCTGCAGTTTCCCTTTGCCCGAAATGCTCG 420 Query 713 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGGCTCACAGGGGATATGGTGGAATTGGAACTCTTCTTGTGATCAAGGTCTCTCCTGAAT 480 Query 773 CAGCCAGCCAATTTGGAGAATTGGTTGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 832 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 481 CAGCCAGCCAATTTGGAGAATTGGTAGCAGATCCAGTTACTAATGAGCTGCTTCATTACA 540 Query 833 CCGAGAAACCCGAAACTTTTGTCAGTGATCGAATTAACTGTGGTGTTTATGTATTTACAC 892 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 541 CCGAGAAACCCGAAACTTTTGTCAGTGATCGTATTAACTGTGGTGTTTATGTATTTACAC 600 Query 893 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTGAAATTTTTAATGCCATAGGAGATGTTTCTACTCAGAGGAAAGATAGAGCAACTCTAA 660 Query 953 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 1012 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AACGTGTTTCCAGCTTCGAAGCTCTTCAACCGGCAACAAGGATCCCGACAGATTTTGTAA 720 Query 1013 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACGGCTATATACTTATGAGA 1072 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 721 GACTGGATCAAGACATCCTTTCACCTCTAGCTGGGAAGAAACAGCTATATACTTATGAGA 780 Query 1073 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGGATGTCGTTGAGGTGTTCAGGACTCT 1132 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 781 CTATGGATTTCTGGGAGCAAATCAAATCTCCTGGAATGTCTTTGAGGTGTTCGGGACTCT 840 Query 1133 ATCTTTCCCAATTCCGCTTGACATCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 1192 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 ATCTTTCCCAATTCCGCTTGACCTCTCCCCAACTGTTGGCTAGTGGTGATGGAACAAGGA 900 Query 1193 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTTCACCCAACTGCAA 1252 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 901 GTGCCATTGTGATTGGTGATGTTTACATACATCCTTCTGCAAAAGTACACCCAACTGCAA 960 Query 1253 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AGATTGGTCCCAACGTCTCAATCTCTGCAAATGCTCGTGTTGGACCGGGCGTCAGGCTTA 1020 Query 1313 TGAGCTGCATCATCCTTGACGATGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1372 | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1021 TCAGCTGTATCATCCTTGATGACGTTGAGATCATGGAAAATGCAGTGGTGACTAACGCAA 1080 Query 1373 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGCGTCCAGGCTGAGGGAGTCTACA 1432 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1081 TTGTTGGGTGGAAATCTTCTATCGGGAGATGGTCCCGTGTCCAGGCTGAGGGAGTTTACA 1140 Query 1433 ATTCGAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGACGAGGTTGTGG 1492 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1141 ATTCCAAACTCGGAGTTACAATTCTCGGAGACTCGGTTGCAGTTGAAGATGAGGTTGTGG 1200 Query 1493 TGACCAGCAGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1552 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 TGACCAGCTGTATTGTTCTTCCAAACAAGACACTGAACGTCAGTGTTCAAGACGAGATCA 1260 Query 1553 TTTTGTAACTGAAAAACGGAAGTTGAAAAATGGAACCAACCCAGTGGGGAGCAGCCACAC 1612 |||||||| ||||||| |||| ||||||||||||||||||||||||||||| | |||| Sbjct 1261 TTTTGTAATTGAAAAATGGAACATGAAAAATGGAACCAACCCAGTGGGGAGC--C-ACAC 1317 Query 1613 TATCTCCCTCTGATTCAATATCTACTGGAGAACCACATAAGCAAATATTTGGGAACTAAT 1672 ||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 1318 CATCTCTCTCTGATTCAATATCTACTGGAGAATCACAGAAGCATATATTTGGGAACTAAT 1377 Query 1673 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACATTGTATCAATTCCATTTTCTA 1732 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 1378 TCACATGTATCATTTATTTACACCAAGAATTTTCCAACTTTGTATCAATTTCATCTTCTA 1437 Query 1733 TACTCACAA-CACAGCTACTGTAA 1755 ||||||||| |||||||||||||| Sbjct 1438 TACTCACAATCACAGCTACTGTAA 1461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74009346035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5