BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74940.1 Length=1207 Score E Sequences producing significant alignments: (Bits) Value Ahg926875 jgi|Araly1|926875|scaffold_202436.1 1059 0.0 Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991 135 5e-31 > Ahg926875 jgi|Araly1|926875|scaffold_202436.1 Length=712 Score = 1059 bits (573), Expect = 0.0 Identities = 663/705 (94%), Gaps = 11/705 (2%) Strand=Plus/Plus Query 217 TTCTTGATTATGATACTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 276 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12 TTCTTGATTATGATTCTAAGCAAGAGACCTCATCTAATGATCCGTAAATTGTCTGAGATG 71 Query 277 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCCAGTCCGAGA 336 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 72 TTGGTTCCAAGAAGCAGATCTGCTGCTATTAAACCGGAGGAGTACACGGCGAGTCCGAGA 131 Query 337 AGTCCGTTGGATTTGAACTTCCCCTCCCCGGTTCACTCGAAGCGGTTCGGTTCTGGTGGT 396 ||||| ||||||||||||||||| || |||||| ||||||||||||||||||| |||||| Sbjct 132 AGTCCCTTGGATTTGAACTTCCCGTCGCCGGTTAACTCGAAGCGGTTCGGTTCCGGTGGT 191 Query 397 GTCGGTTTGGGTATTGTTGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCATGAT 456 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 192 GTCGGTTTGGGTATTGTAGCTGCGTTGGAGGAAACTAGCAACGGGATTAACCGGCACGAT 251 Query 457 CCGGTTCGTTACTCCGGGAGATTCAGGTG-CCCGGAGATTGATCTGTCGGATGAGGA--A 513 |||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||| | Sbjct 252 CCGGTTCGTTACTCTGGGAGATTCCGGTGTCCCG-AGATTGATCTGTCGGATGAGGAGGA 310 Query 514 -TACACTTATGTTACGAGCCCAAACGGGCCGACCAAAGTGTATTACAACGACGACGGGTT 572 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 311 ATACACTTATGTCACGAGCCCAAACGGACCGACTAAAGTGTATTACAACGACGACGGGTT 370 Query 573 TGAATTGTCTGAAAATGATTATCGGAGAGTTCATAAACCGATGGTTACCGTCGATGAACC 632 |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 371 TGAATTGTGTGAAAATGATTATCGGAGAGTGCATAAACCGATGGTTATTGTCGATGAACC 430 Query 633 ACCGGTTATTGAAAGACAGAGTGT-TAGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCT 691 |||||||||| ||||||||||| | ||||| ||| || |||||||||||||||||||||| Sbjct 431 ACCGGTTATTAAAAGACAGAGT-TATAGGGATCCGACTGAGTTTCTGAGTTCGTGTTGCT 489 Query 692 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 TGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTACAAAGGAGAGATGGGATTTT 549 Query 752 GTAGTGCCGAATGCAGATCAGTGCAAATAATGAATGACGAACGACAAGAGCAATGTAAAA 811 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 550 GTAGTGCTGAATGCAGATCAGTGCAAATAATGAATGACGAACGAAAAGAGCAATGTAAGA 609 Query 812 CGCAAGTTTCAAGAAACGCCGACGTTTTGAGCTCTCCTTACGCCGCCGGACAGA-GATTA 870 |||| ||||||||||||| |||||||| || |||||||| |||||||||||||| | ||| Sbjct 610 CGCAGGTTTCAAGAAACGTCGACGTTTCGACCTCTCCTTGCGCCGCCGGACAGACG-TTA 668 Query 871 TCTGCCGG-AGTATTCGTATTTTAGGATGATCACAATTCACAATA 914 |||||||| | ||||||||||||||||| |||||||||||||||| Sbjct 669 TCTGCCGGGA-TATTCGTATTTTAGGATCATCACAATTCACAATA 712 > Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991 Length=663 Score = 135 bits (73), Expect = 5e-31 Identities = 242/320 (76%), Gaps = 26/320 (8%) Strand=Plus/Plus Query 488 CGGAGATTGATCTGTCGGA---TGAGGAATACACTTATGTTACGAGC-CCAAACGGGCC- 542 |||| |||||||| || || |||||||||||||| || |||| | | | |||| Sbjct 269 CGGATATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA-CTCGTGA-TGGCCG 326 Query 543 GACCAAAGTGTATTACAACGACGACGGGTTTGAA-TT-GTCTGAA--AAT-GA----TTA 593 ||||||||| ||||||||||| || | |||||| || ||| ||| || || | | Sbjct 327 GACCAAAGTCTATTACAACGAAGAAGAATTTGAATTTGGTCAGAATCTATCGACCGGTGA 386 Query 594 TCGGAGAGTT-CATAAACCGATGGTTACCGTCGATGAACCACCGGTTATTGAAAGACAGA 652 || |||| || | ||| ||| | | || ||| ||| ||||||| | | |||| ||| Sbjct 387 TCAGAGA-TTGAAAAAATGGATAGAAATCGCCGAGGAATCACCGGTGA-AG-AAGAGAGA 443 Query 653 -GTGTT-AGGGGTCCAACAGAGTTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCA 710 || || || | | | |||| ||||||| ||| ||||| |||||||||||||||||||| Sbjct 444 GGTATTGAGAGATTCTCCAGATTTTCTGACTTCATGTTGTTTGTGTAAGAAGAAACTTCA 503 Query 711 AGGCAAAGACATATACATGTACAAAGGAGA-GATGGGATTTTGTAGTGCCGAATGCAGAT 769 |||||||||||| ||||||||||||||||| || || |||||||||| || || |||| Sbjct 504 AGGCAAAGACATTTACATGTACAAAGGAGATGAAGG-ATTTTGTAGTAAAGAGTGTAGAT 562 Query 770 CAGT-GCAAATAATGAATGA 788 | || | |||||||| |||| Sbjct 563 C-GTTGAAAATAATGGATGA 581 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45061287894 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5