BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74970.1
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476636 jgi|Araly1|476636|fgenesh2_kg.2__1766__AT1G74970.1 1343 0.0
> Ahg476636 jgi|Araly1|476636|fgenesh2_kg.2__1766__AT1G74970.1
Length=942
Score = 1343 bits (727), Expect = 0.0
Identities = 887/961 (92%), Gaps = 23/961 (2%)
Strand=Plus/Plus
Query 2 TCTTCACTCTGCTCGTTATCTTCTTCCTTTTTACCTGTTCAACGAAACTCCTGAGCTCAG 61
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1 TCTTCACTCTGCTCGTTATCTTCTTCC-TTTTACCTGTTCGACGAAACTCCTGAGCTCAG 59
Query 62 CTTCACTTTGCTCGACGTTATCTTCTTCGTTCAGCGACAATGGCGTCGATTACGAACCTC 121
||||| || ||| | ||||||||||||||||||||||||| |||||||
Sbjct 60 CTTCA-----CT-----TTA----C-TCGTTCAGCGACAATGGCGTCGATTTCGAACCTT 104
Query 122 GCCTCTTCTCTCTCTTCACTCTCGTTCTCCTCCCAAGTTTCTCAAAGACCTAACACCATT 181
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 105 GCTTCTTCTCTCTCTTCACTTTCGTTCTCCTCCCAAGTTTCTCAGAGACCTAACACAATC 164
Query 182 TCCTTCCCCCGCGCGAATTCAGTATTCGCATTACCGGCGAAATCCGCA-CGCCGCGCTTC 240
|||||||||||||||||||| || |||||||||||||||||||||| | |||||| ||||
Sbjct 165 TCCTTCCCCCGCGCGAATTCGGTGTTCGCATTACCGGCGAAATCCG-ACCGCCGCTCTTC 223
Query 241 TCTATCTATCACCGCCACGGTATCTGCTCCACCGGAGGAGGAGGAGATAGTTGAACTGAA 300
|||||||| |||||||| ||| |||||||||||||||||||||||||| |||| || ||
Sbjct 224 CCTATCTATTACCGCCACCGTAGCTGCTCCACCGGAGGAGGAGGAGATAATTGAGCTAAA 283
Query 301 GAAATACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GAAGTACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGG 343
Query 361 ACGACGTAAGTGCGCAATCGCTAGAGTTGTTCTTCAGGAAGGTACTGGGAAGGTTATCAT 420
||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 344 ACGGCGTAAGTGCGCAATTGCTAGAGTTGTGCTTCAGGAAGGCACTGGGAAGGTTATCAT 403
Query 421 CAACTATCGTGATGCCAAGGAGTACCTTCAGGGAAATCCATTGTGGCTTCAGTATGTTAA 480
||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 404 AAACTACCGTGATGCCAAGGAGTACCTTCAGGGAAATCCACTATGGCTTCAGTATGTTAA 463
Query 481 AGTACCATTGGTGACTTTAGGATATGAGAATAGCTACGACATATTTGTGAAAGCCCATGG 540
||| ||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 464 AGTCCCACTAGTGACTTTAGGGTATGAGAACAGCTACGACATATTTGTGAAAGCCCATGG 523
Query 541 AGGCGGTCTCTCAGGTCAAGCTCAAGCAATTACCTTGGGAGTCGCACGTGCACTCCTGAA 600
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 524 AGGCGGTCTCTCAGGTCAAGCTCAAGCTATTACCCTGGGAGTCGCACGTGCACTCCTCAA 583
Query 601 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAGGAAGGTTTGCTCACTAGAGATGCGAG 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 584 GGTAAGTGCAGACCACAGATCGCCTTTGAAGAAAGAAGGTTTGCTCACTAGAGATGCGAG 643
Query 661 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCCCCACAATTCTCCAA 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 644 AGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCACCACAATTCTCCAA 703
Query 721 GCGTTAAGAGTTTTACATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCAtt 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GCGTTAAGAGTTTTT-ATATCATTGGATCAACTCTTCAAGTAGACTCCTCTGCCTCCATT 762
Query 781 -ttttttAA-AAACTTTTCTTGTCTATTATCG-GTCTTTTGTTTCATGTTAATGTTTATG 837
|||||| ||||| |||||||||||||| | || ||||||| ||||||||||||||||
Sbjct 763 CTTTTTTTTTAAACTCTTCTTGTCTATTAT-GTGTGTTTTGTTCCATGTTAATGTTTATG 821
Query 838 TGTAGACGAACTAATACAATCTCTGTTTTGTTTGAATGGAACGCAAAGTTGATATGCTTT 897
||||||||||| |||||||||||||||| |||||||||||| ||||| ||| ||||||||
Sbjct 822 TGTAGACGAACCAATACAATCTCTGTTTCGTTTGAATGGAAGGCAAAATTGGTATGCTTT 881
Query 898 TGTAACAAATGCACTTATGAATTGTGATCAGACAAATGCACTTCTGAATCGTTTATCAGT 957
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 882 TGAAACAAATGCACTTATGAATTGTGATCAAACAAATGCACTTGTGAATCGTTTATCAGT 941
Query 958 T 958
|
Sbjct 942 T 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5