BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75040.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926884 jgi|Araly1|926884|scaffold_202445.1 1090 0.0
Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1 556 8e-158
Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469 516 1e-145
> Ahg926884 jgi|Araly1|926884|scaffold_202445.1
Length=761
Score = 1090 bits (590), Expect = 0.0
Identities = 685/731 (94%), Gaps = 5/731 (1%)
Strand=Plus/Plus
Query 64 TCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAG-CGGCATTGCTG-TTATGGCCA 121
||||||||||||||||||||| ||||||||||||| || ||||||||||| || | ||||
Sbjct 33 TCCAGTATTCACATTCTCTTCTTCGTGTTCATCAC-AGCCGGCATTGCTGTTTCT-GCCA 90
Query 122 CAGACTTCACTCTAAGGAACAATTGCCCTACCACCGTCTGGGCCGGAACTCTCGCCGGTC 181
| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 91 CCGACTTCACACTAAAGAACAATTGCCCTAACACCGTCTGGGCCGGAACTCTCGCCGGCC 150
Query 182 AAGGACCCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGGTGCTTCCCGACAGCTCA 241
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 151 AAGGACCCAAGCTCGGTGACGGCGGATTTGAATTGACTCCAGGTGCTTCCCGACAGCTCA 210
Query 242 CGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGACGCCT 301
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CGGCTCCTGCCGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGACGCCT 270
Query 302 CCGGAAACGGTAGATGTGTAACCGGAGACTGTGGCGGTCTAAGATGTAACGGCGGCGGAG 361
|||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 271 CCGGCAACGGTAGATGCGTTACCGGAGACTGTGGCGGTCTAAGATGTAACGGTGGCGGAG 330
Query 362 TTCCTCCCGTCACTCTGGCTGAATTCACTCTAGTAGGCGATGGCGGCAAAGATTTCTACG 421
||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 331 TTCCTCCAGTCACTCTTGCTGAATTCACCCTCGTAGGCGATGGCGGCAAAGATTTCTACG 390
Query 422 ATGTGAGCCTCGTAGATGGTTACAATGTCAAGCTGGGGATAAGACCATCCGGAGGATCGG 481
| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 391 ACGTGAGCCTCGTTGACGGTTACAATGTCAAATTGGGGATAAGACCATCCGGAGGATCCG 450
Query 482 GAGATTGCAAATACGCAGGCTGTGTCTCTGACCTCAACGCGGCTTGCCCCGACATGCTTA 541
|||||||||| ||||||||||||||| | |||||||||||||||||||| ||| ||||||
Sbjct 451 GAGATTGCAAGTACGCAGGCTGTGTCGCCGACCTCAACGCGGCTTGCCCTGACGTGCTTA 510
Query 542 AGGTCATGGATCAGAACAATGTCGTGGCCTGCAAGAGTGCCTGTGAGAGGTTTAATACGG 601
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 511 AGGTCATGGATCAGAACAATGTCGTGGCGTGCAAGAGTGCCTGTGAGAGGTTTAATACGG 570
Query 602 ATCAATATTGCTGCCGTGGAGCTAACGATAAGCCGGAAACTTGTCCTCCCACGGACTACT 661
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 571 ATCAATATTGCTGCCGTGGAGCTAACAATACGCCGGAAACTTGTCCTCCCACGGAGTACT 630
Query 662 CGAGGATTTTCAAGAACGCTTGCCCTGACGCCTATAGCTACGCTTATGACGACGAAACGA 721
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 631 CGAGGATTTTTAAGAACGCTTGCCCTGACGCCTATAGCTACGCTTATGACGATGAAACAA 690
Query 722 GCACCTTCACTTGTACCGGAGCTAACTACGAAATCACTTTCTGCCCTTAAAAAC-CGAAG 780
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 691 GCACCTTCACTTGTACTGGAGCTAACTACGAAATCACTTTCTGCCCATAAAAAGGCGAAG 750
Query 781 CTTCGAGTTAG 791
|||||| ||||
Sbjct 751 CTTCGATTTAG 761
> Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1
Length=863
Score = 556 bits (301), Expect = 8e-158
Identities = 678/850 (80%), Gaps = 66/850 (8%)
Strand=Plus/Plus
Query 52 ATGGC-AAATATCTCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAGCGGCATTGC 110
||||| ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 38 ATGGCGAAA-ATCTCCAGTATTCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGC 96
Query 111 TGTTATG--GCCACAGACTTCACTCTAAGGAACAATTG-CCCTACCACCGTCTGGGCC-G 166
|| ||| ||||| | |||||| || ||||| ||| | || |||||||| |||| |
Sbjct 97 TG--ATGCCGCCACCGTGTTCACTTTACTGAACAGTTGTTCTTA-CACCGTCT-GGCCGG 152
Query 167 GAACTCTCGCCGGTCAAGGA-C-CCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGG 224
|||||||| |||| ||| | | || |||||||| || |||||| |||||||||||
Sbjct 153 GAACTCTCTCCGG-CAA-CAGCGTCACCCTCGGCGACGGCGGATTTCCCTTGACTCCAGG 210
Query 225 TGCTTCCCG-ACAGCTCACGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 283
|||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 211 CGCTT-CCGTACAGCTCACGGCTCCTACGGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 269
Query 284 GCTGCAACTTTGACGCCTCCGGAAACGGTAGATGTGTAACCGGAGACTGTGGCGG--TCT 341
||||||||||||| |||||||| |||||| || || ||||||||||| ||||| | |
Sbjct 270 GCTGCAACTTTGATGCCTCCGGCCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTT 329
Query 342 -AAGATGTAACGGCGGCGGAGTTCCTCCCGTC-ACTCTGGCTGAATTCAC--TCT-AGT- 395
|| ||||| |||||||||||||||||| | | ||||| || |||||||| || | |
Sbjct 330 TAAAATGTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCCGAATTCACCGTCGGA-TC 387
Query 396 AGGCGATGGCGGCAAAGATTTCTACGATGTGAGCCTCGTAGATGGTTACAATGTCAAGCT 455
| || ||| ||||| ||||||||||| ||||||||||| || || |||||||||||| |
Sbjct 388 AAGCAATGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGATACAATGTCAAGAT 447
Query 456 GGGGAT-AAGACCATCC-GGAGGAT-CGGGAGATTGCAAATACGCAGGCTGTGTCTCTGA 512
|||||| || ||| || ||||||| ||| | ||||||||||||||||||| ||||| ||
Sbjct 448 GGGGATTAA-ACC-TCAAGGAGGATTCGGAA-ATTGCAAATACGCAGGCTGCGTCTCCGA 504
Query 513 CCTCAACGCGGCTTGCCCC-GAC-ATGCTTAAGG-TCATGGATCAGAA--CA--ATGT-- 563
| |||||| | |||||| | | | ||||| || ||||||||| ||| || | ||
Sbjct 505 CATCAACGAGATTTGCCCTAG-CGA-GCTTA-GGATCATGGATCCGAATTCAGGAAGTAT 561
Query 564 CGTGGCCTGCAAGAGTGCCTGTGAGAG-GTTTAATACGGATCAATATTGCTGC-CGTGGA 621
|| || |||||||| || |||| | | ||||||| || ||| |||||| | |||
Sbjct 562 CGCCGCGTGCAAGAGCGCTTGTGCG-GCGTTTAATTCGCCGGAATTTTGCTGTAC-TGGT 619
Query 622 GCTAACGATAAGCCGGAAACTTGTCCTCCCACGGACTACTCGAGGAT-TTTCAAGAACGC 680
||| ||| | |||| |||||||| |||| ||| | |||||| || ||| ||||||||
Sbjct 620 GCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTT-AAGAACGC 678
Query 681 TTGCCCT-GACGCCTATAGCTACGCTTATGACGACGAAACGAGCACCTTCACTTGTACCG 739
||||||| | ||| ||||| |||||||| ||||||| ||||||| |||||||||||||
Sbjct 679 TTGCCCTAG-CGCTTATAGTTACGCTTACGACGACGCTTCGAGCACTTTCACTTGTACCG 737
Query 740 GAGCTAACTACGAAATCACTTTCTGCCCTTA---A-----AAACCGAAGCTTCGAGTT-A 790
|| |||||||| ||||||||||||||| | | |||||| |||| || ||| |
Sbjct 738 GATCTAACTACTTGATCACTTTCTGCCCT-ACCCAGTCTTAAACCGGAGCTCCG-GTTTA 795
Query 791 GA-TACAGTCGGGTTTAATTATCTCTCACGTTTCTTTTGCTTATTATGTACGGAAAGATA 849
|| | || |||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 796 GAATTGGGTTGGGTTTC-TC-TCTCTCACGTTTCTTTTGCTTGTTATGTACGGAAAGATA 853
Query 850 AATAAGGAAA 859
||||||||||
Sbjct 854 AATAAGGAAA 863
> Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469
Length=738
Score = 516 bits (279), Expect = 1e-145
Identities = 599/746 (80%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 52 ATGGC-AAATATCTCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAGCGGCATTGC 110
||||| || || ||| |||||||||||||||||| | || |||||||||| |||||||||
Sbjct 1 ATGGCGAATTA-CTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGC 59
Query 111 TGTTAT-GGCCACAGACTTCAC-TCTA-AGGAACAATTG-CCCTACCACCGTCTGGGCC- 165
|||| | ||||| | |||||| | || | ||||| ||| || || |||||| | ||||
Sbjct 60 TGTT-TCCGCCACCGTCTTCACAT-TACA-GAACAGTTGTCCTTA-CACCGT-TTGGCCG 114
Query 166 GGAACTCTCGCCGGTCAAGGAC-CCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGG 224
|||| |||| ||||| || ||| || |||||||| || |||||| |||||||| ||
Sbjct 115 GGAATTCTCTCCGGT-AACGACAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGG 173
Query 225 TGCTTCCCG-ACAGCTCACGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAG 283
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 174 CGCTT-CCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCG 232
Query 284 GCTGCAACTTTGACGCCTCCGGAAACGGTAGA-TGTGTAACCGGAGACTG---TGGCGGT 339
|||||||||| ||||||||||| |||||| | || || ||||||||||| ||||| |
Sbjct 233 GCTGCAACTTCGACGCCTCCGGCCACGGTA-ACTGCGTCACCGGAGACTGCGGTGGCGTT 291
Query 340 CTAAGATGTAACGGCGGCGGAGTTCCTCCCGTCACTCTGGCTGAATTCACTCTAGTAGGC 399
|||| ||||||||||||||||||||| || |||||||| ||||||||||| || || |||
Sbjct 292 CTAAAATGTAACGGCGGCGGAGTTCCACCAGTCACTCTTGCTGAATTCACACTCGTTGGC 351
Query 400 GATGGCGGCAAAGATTTCTACGATGTGAGCCTCGTAGATGGTTACAATGTCAAGCTGGGG 459
||||||||||| ||||||||||| ||||||||||| || |||||||||||| || |||||
Sbjct 352 GATGGCGGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGG 411
Query 460 AT-AAGACCATCC-GGAGGATCGGGAGATTGCAAATACGCAGGCTGTGTCTCTGACCTCA 517
|| || ||| || ||||| || || |||||| | ||||| ||||||||| | ||| |||
Sbjct 412 ATTAA-ACC-TCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCA 469
Query 518 ACGCGGCTTGCCCCGAC-ATGCTTAAGG-TCATGGATC-AGA-AC---AATG-TCGTGGC 569
|||||| ||| || || | |||| || ||||||||| | | || ||| ||| |||
Sbjct 470 ACGCGGTTTGTCCTAACGA-GCTTC-GGATCATGGATCCACATACCGGAATCATCGCGGC 527
Query 570 CTGCAAGAGTGCCTGTGAGAG-GTTTAATACGGATCAATAT-TGCTG--CCGTGGAGCTA 625
|| || || || |||| | | ||||||| | || ||| | || || ||| | |||
Sbjct 528 GTGTAAAAGCGCTTGTGCG-GCGTTTAATTCTGAGGAAT-TCTGTTGTACCG-GT-GCTC 583
Query 626 ACGATAAGCCGGAAACTTG-TCCTCCCACGGACTACTCGAG-GAT-TTTCAAGAA-CGCT 681
||| | |||| ||||||| || ||| ||| | |||||| | ||| ||| || || ||||
Sbjct 584 ACGCGACGCCGCAAACTTGCTC-TCCGACGCATTACTCG-GCGATGTTT-AA-AAGCGCT 639
Query 682 TGCCCTGACGCCTATAGCTACGCTTATGACGACGAAACGAGCACCTTCACTTGTACCGGA 741
||||||| ||| ||||| ||||| |||||||||| || |||||||||||||||||||||
Sbjct 640 TGCCCTGGCGCTTATAGTTACGCCTATGACGACGCCACAAGCACCTTCACTTGTACCGGA 699
Query 742 GCTAACTACGAAATCACTTTCTGCCC 767
|||||||| ||| ||||||||||
Sbjct 700 TCTAACTACTTGATCTCTTTCTGCCC 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5