BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75100.1 Length=2279 Score E Sequences producing significant alignments: (Bits) Value Ahg476649 jgi|Araly1|476649|fgenesh2_kg.2__1779__AT1G75100.1 3020 0.0 > Ahg476649 jgi|Araly1|476649|fgenesh2_kg.2__1779__AT1G75100.1 Length=2103 Score = 3020 bits (1635), Expect = 0.0 Identities = 1971/2124 (93%), Gaps = 60/2124 (3%) Strand=Plus/Plus Query 26 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTAGGCTCCAACTCAGCACCA 85 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTGGGCTCGAACTCAGCACCA 60 Query 86 CCTGTGTTGCGTAGTCCCGGTGGCGATGACGTGGACATCGATTTTGGTGACGTGTTTGGT 145 |||||| | |||| |||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 61 CCTGTGCTACGTAATCCCGGCGGTGATGACGTGGACATCGATTTCGGTGACGTGTTTGGT 120 Query 146 GGTCCTCCTAAGAGACGCTCTAAAGTTAC---TAGTAACGAAGTCAC-ACGACATAGCTT 201 ||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| Sbjct 121 GGTCCTCCTAAGAGACGCTCTAAAGTTACTAATAGTAACCAAGTCACGA-GACATAGCTT 179 Query 202 CAGTGAATCCGCTCTCCGGCGTCGTGACGTCATCGTCGACGTCGGCGATCTGCTTCCGCA 261 |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct 180 CAGTGAATCCGCTCTCAGGCGTCGTGACGTCATCGTCGACGTCGGCTCTCTGATTCCGCA 239 Query 262 AGACGAGAAGCCTGTATTCGGCGAAGATACATCATCTGTCCGGCGTCGTTTCACCACTGA 321 ||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 240 AGACGAGAAGCCTGTTTTCGGCGAAGAGACATC--C-GTCCGGCGTCGTTTCACCACTGA 296 Query 322 TGATTTCTTCGACGATATTTTCAGAGTTAATG-A--A---TCATCATCACTTCCGGGTTC 375 |||||||||||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 297 TGATTTCTTCGACGATATTTTCAGAGTTAATGAATCATCTTCATCATCACTTCCGGGTTC 356 Query 376 TCGGATCCTTAGCCCGGCTCACAAACCCGAATCTTCTTCAGGGACTTCGTCTCCATCCCA 435 ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 357 TCGGATCCTAAGCCCGGCTCACAAACCCGAA---TCTTCAGGGACTTCGTCTCCAGCACA 413 Query 436 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCAACATTTAATTTAGCAGCTACTCGTAG 495 ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 414 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCTACATTTGGTTT---AGCTACTCGTAG 470 Query 496 TTTGAACAAGAACAAAGAAACTGTTTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 555 ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 471 TTTGAGCAAGAACAAAGAAACAGTCTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 530 Query 556 AGATGTGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTCCACAAGTTTT 615 ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| | Sbjct 531 CGATATGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTGCACGAGTTGT 590 Query 616 TGTTACTGGGAAAGGAAGGCAATTTCATTTCTCTATCTACAAGTGGCCTAATAAAGGAGT 675 ||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| || Sbjct 591 TGTTACTGGCAAAGGCAGGCAGTTTCATTTCTCTATTTACAAGTGGCCTAATAAAGGTGT 650 Query 676 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGAGACAAC 735 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 651 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGGGACAAC 710 Query 736 ACCTGT-ACCATTGAGTGATTATCGAAAAACTTCAGTTGTTGAGAAATTGGGTAAAAATG 794 || || | ||||||||||| ||||||||||| || ||||||||| |||| |||||| Sbjct 711 GCCGGTGA-CATTGAGTGATCATCGAAAAACTCCA---GTTGAGAAAGCGGGTGAAAATG 766 Query 795 AAGAAGGAGATGGAAAAAGTGGTTTATCTGGTTTGAAAGATGTGAAGAAGACCTCGCTAA 854 ||||| | || | ||| | |||||||||||| | |||||||||||| |||| Sbjct 767 AAGAA-G-GA--G--AAA---G------TGGTTTGAAAGAGGAGAAGAAGACCTCACTAA 811 Query 855 AGCGTCCTGGTGTCCAGACAAAAGAAGAGAAAACAGAAA-CAGATTTGAAGTCTGAACAA 913 ||||||||||||| ||||||||||||||||||||||||| | |||| | ||||||| || Sbjct 812 AGCGTCCTGGTGTTCAGACAAAAGAAGAGAAAACAGAAATC-GATTCGGTGTCTGAAAAA 870 Query 914 GCCTTCTTTGGTGTCTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTGATTC-A--G-- 968 |||||||||||||| ||||||||||||||||||||||||||||||||| |||| | | Sbjct 871 GCCTTCTTTGGTGTGTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTTATTCAATTGAT 930 Query 969 TTG-AGTCTGAACAGGCCTTCTCTGGTGTGTCAAAAGCACATGAAGCTACTACTGTGAAG 1027 ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 931 TTGAAGTCTAAACAGGCCTTCTCTGGTGTGTCAAAAGCTCATGAAGCTACTACTGTGAAG 990 Query 1028 CCTCTTCATTCAATTTTTCAtgaagaa-gatgagagacaagatgagaaaatagtatcaga 1086 |||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||| Sbjct 991 TCTCTTCATTCAATTTTGCATGAA-AACGATGAGAGACAAGGTGAGAAAATAGTATCAGA 1049 Query 1087 gagagaagtgagaaaaggtaaaagCAAAGCGAAGAACACTCGAAGTTTTACCGAAGATTC 1146 ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct 1050 GAGAGAAGTGAGAAAAGGTAAAAGCAAAGCGAAGAACACGCAAAGTTTTACTGAAGATTC 1109 Query 1147 AAGAACCAAGAAGAAATCACAAGGCACTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1206 |||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1110 AAGAACAAAAAAGAAACCACAAGGCATTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1169 Query 1207 TAAATCCAGCTTCGCAAGTTCATCAGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1266 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1170 TAAATCCAGCTTCGCAAGTTCATCCGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1229 Query 1267 AAAAGTGAGTGACTTCGTTAAGATTTTCAGTAAAGGAGCTTCAGTTGGAGCAGGTGGGGA 1326 |||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 1230 AAAAGTCAGTGACTTTGTTAAGATTTTCAGTAAAGGAGCCTCAGGTGGAGCAGGTGGGGA 1289 Query 1327 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAAGAAACTCCCAAGACTGATATCATTCA 1386 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1290 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAGGAAACTCCCAAGACTGATATCAATCA 1349 Query 1387 TGATGGTTCTAATGCCAAGGAAACTGTAAACATTCCTGATCAACAAAAGAAATCGACTCC 1446 ||||| | ||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1350 TGATGCTGCTAATGCCAAGGAAAATGTAAACATTCCTGATCAGCAAAAGAAATCGACTCC 1409 Query 1447 AGATATCCCCGCTATGAATCGGGA-TCAGAAACCTTCACAGT-CAACTCAGAAAAAAGAT 1504 |||||||||||||||||||||||| || |||||||||||| | ||||||||||||| ||| Sbjct 1410 AGATATCCCCGCTATGAATCGGGATTC-GAAACCTTCACA-TGCAACTCAGAAAAAGGAT 1467 Query 1505 TCAGACCGGGAGAGCATGAACTATAAGGCTCCTGGTGATACTGTACAAGAAGAGAGACAA 1564 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1468 TCAGACCGGGAGAGCATGAACTATAAGGCTACTGGTGTTACTGTACAAGAAGAGAGACAA 1527 Query 1565 GAACCTAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1624 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 GAACCGAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1587 Query 1625 GATGTGGAGGATATAACACAAGATGAAAACAA-AA--TGGAAGAGGCCAATAAGGATGCT 1681 |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| Sbjct 1588 GATGTGGAGGATATAACACAAGATGAAAACAACAAAATGGAAGAAACCAATAAGGATGCT 1647 Query 1682 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGCGGAAAGAGTGGAAAC 1741 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1648 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGTGGAAAGAGCGGAAAC 1707 Query 1742 ATTCGGTCTCTTCTATCCACGCTGCAATATATTCTTTGGTCTGGGAGCGGGTGGAAGCCG 1801 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1708 ATTCGGTCTCTTCTATCTACGCTGCAATATATTCTTTGGTCCGGGAGCGGGTGGAAGCCA 1767 Query 1802 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1768 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1827 Query 1862 CTAATACTTCATCCAGACAAACTACAACAAAAGGGTGCTTCTGCAAACCAGAAATACATG 1921 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1828 CTAATCCTTCATCCAGATAAACTACAACAAAAGGGTGCATCTGCAAACCAGAAATACATG 1887 Query 1922 GCCGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1981 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1888 GCTGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1947 Query 1982 GTTTAAAGGAAGAAAACGAGTCTTTAGTCTTTTAGTTCTTTACACAAAGGCTATGTACAG 2041 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1948 GTTTAAAGGAAGACAACGAGTCTTTAGTCTTTTAGTTCTT-ACACAAAGGCTATGTACAG 2006 Query 2042 A--TACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTATACTTACAT 2099 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2007 AGATACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTTTACTTACAT 2066 Query 2100 CAAATTTTTGTTGGTTTGTTGAGA 2123 ||| |||||||||||||||||||| Sbjct 2067 CAATTTTTTGTTGGTTTGTTGAGA 2090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85817321985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5