BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75180.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476660 jgi|Araly1|476660|fgenesh2_kg.2__1790__AT1G75180.3 1923 0.0
> Ahg476660 jgi|Araly1|476660|fgenesh2_kg.2__1790__AT1G75180.3
Length=1670
Score = 1923 bits (1041), Expect = 0.0
Identities = 1213/1290 (94%), Gaps = 35/1290 (3%)
Strand=Plus/Plus
Query 230 ATATGTTTTGGATTCAGTGAGAAACAGAGATTGATTTTGGTTTTCTTTAATCATGGTGGA 289
|||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||
Sbjct 407 ATATGTTTTGGATTCAGTGAGAAATAGAAATTGATTTTGG-TTTC-TTAATCATGGTGGA 464
Query 290 GCCTTATGAGACACGTAACAACGGTGAAGCATCCCAGATGATCAGATATCAGAGTTATAA 349
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 465 GCCTTATGAGACACGTAACAACGGTGAAGCTTCCCAGATGATCAGATATCAGAGTTATAA 524
Query 350 CCATCACAATTCCAGACTACCATCTTCATTATCATCGCCATTGCTTGATTTGAGAGTGTT 409
|||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 525 CCATCACAATTCCAGATTACCATCACCATTATCATCGCCATTACTTGATTTGAGAGTGTT 584
Query 410 CTATGTCAGAATCAGTAATTTCAAGGTGGATCATTCGACACCTGAGGTTCTCACCATTAC 469
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 585 CTATGTCAGAATCAGCAATTTCAAGGTGGATCATTCGACACCTGAGGTCCTCACCATTAC 644
Query 470 TCATATTCCTTTGGATCCAGATTCACTTCTGGAGATTAATGGTGTTAGAATGAGCATGTA 529
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 645 TCATATTCCTTTGGATCCAGATTCACTTCTGGAGATAAATGGTGTTAGAATGAGCATGTA 704
Query 530 CTCTGAAGGAGTTTCTTCTCAGCTTAGGCGTGATCGTGTTGATAAGAAATCTGAAGTTGC 589
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 705 CTCTGAAGGAGTTTCTTCTCAGCTAAGGCGAGATCGTGTTGATAAGAAATCCGAAGTAGC 764
Query 590 TACTTTTATCAGCACGGATAATATCAGGTTATCTGGTAGTGTGAAGTTTGAGGTTTATGA 649
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 765 TACTTTTATCAGCACAGACAATATCAGGTTATCTGGTAGCGTGAAGTTTGAGGTTTATGA 824
Query 650 TAAAGATGAGCTGGTTTTGTCTGGAACGCTTGAGATGTCTGGTAGTAATGGTTTCACTGG 709
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 CAAAGATGAGCTGGTTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAATGGTTTCACTGG 884
Query 710 TGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGAGATCACTGCAGA 769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TGAATCTAAGCATAGCGTGAAGCGGTGGAACATGAATTGTGAAGCTGAGATCACTGCAGG 944
Query 770 GTCTGGTTTCTTGAAGGAGAAACATATTGGTGGTTCGGAGTTATCTTCTCCATTGCCAAC 829
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 945 GTCTGGTTTCTTGAAGGAGAAACATATTGGTGGTTCGGAGTTATCATCTCCATTGCCAAC 1004
Query 830 TATTGAAGTCTATGTCACTGGCTGCTTTTCTGGAACTCCTATCATCCTAACGAAGACTCT 889
|||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||
Sbjct 1005 TATTGAAGTCTATGTCACTGGCTGCTTTTCAGGAACTCCCATCATCTTAACCAAGACTCT 1064
Query 890 ACAGCTTGGTTTCAGAAAGAAGCACGGTAGAGTGACTGCATTAGATTCGATTCCCGAGTA 949
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1065 TCAGCTTGGTTTCAGAAAGAAGCACGGTAGAGTGGCTGCATTAGATTCGATTCCGGAGTA 1124
Query 950 TGAAACTGATGAGCCTCATAAAGGAAACTCATCTGAGCTTGATTATCAGGTTACTGAATA 1009
|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1125 TGAAGCTGATGAGCCTCATAAAGGAAACTCATCTGAGCTTGATTATCAGGTAACAGAATA 1184
Query 1010 TGGAAGTTATAAACAAGAATATGAAGGAGAACACAGCGACATGTACTGGAATAGAGAGTA 1069
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1185 TGGAAGTTATAAACAAGAATATGAAGGAGAACACAGCGACATGTATTGGAATAGAGAGTA 1244
Query 1070 CGCAGATGGTGAAGATGGTGAGATGTCGTGGTTCAACGCTGGTGTGAGGGTTGGTGTGGG 1129
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1245 CGCAGATGGTGAAGATGGTGAGATGTCGTGGTTCAACGCCGGTGTGAGGGTTGGTGTGGG 1304
Query 1130 AATTGGTCTTGGTGTCTGTGTAGGTCTTGGCATTGGGGTTGGCCTTCTGGTGCGTACCTA 1189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1305 AATTGGTCTTGGTGTCTGTGTAGGTCTTGGCATTGGGGTTGGCCTTCTAGTGCGTACCTA 1364
Query 1190 TCAATCGACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCAT-TCAAATTGCCTCA 1248
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1365 TCAATCAACCACCAGAAACTTCAGAAGGAGGATTATCTAGTTTCATCT-AAATTGCCTCA 1423
Query 1249 AGCTTCATCTACTCTCTC-C-CTCT---A--A-CTCCAATCCGTTGCACATCACTTTTGA 1300
|||||| ||||||||||| | |||| | | |||||||||||||||||||||||||||
Sbjct 1424 AGCTTCTTCTACTCTCTCTCTCTCTCCCACTAACTCCAATCCGTTGCACATCACTTTTGA 1483
Query 1301 CTGCAGAACTCTAAGCTATATAGTCTAAGCTAATACTGCTGTGTAGTATAATTTTTGTTT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTGCAGAACTCTAAGCTATATAGTCTAAGCTAATACTGCTGTGTAGTATAATTTTT---- 1539
Query 1361 TATGTACTTTTTAATCTCTTTGTGCCTTCAAATTTTGAAAGAAATCATTTTCCCTTCTTC 1420
||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1540 ------CTTTT----CTCTTTGTGCCTTCAAATTTTGAAAGAAATCATTCTCCCTTCTT- 1588
Query 1421 TTGTGTTTGGTGAGATTCAGATTGAAAGAAACAAAGCTTGTTGCTGGTAATGCGAATCTT 1480
||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 1589 --GTGTTTGTTGAGATTCAGACTGAAAGAAAGAAAGCTTGTTG-----A-TGCGAATCTT 1640
Query 1481 GTTTTCTGCTTCCTGTAAATAAAATGCTTA 1510
|| ||||||||||||||||||||||||||
Sbjct 1641 ATTGTCTGCTTCCTGTAAATAAAATGCTTA 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5