BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75350.1 Length=672 Score E Sequences producing significant alignments: (Bits) Value Ahg926916 jgi|Araly1|926916|scaffold_202477.1 706 0.0 > Ahg926916 jgi|Araly1|926916|scaffold_202477.1 Length=481 Score = 706 bits (382), Expect = 0.0 Identities = 430/453 (95%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 83 GAAGAC-AAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTC 141 |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 12 GAAGGCGAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAATCCATGTGTTC 71 Query 142 CTTCTCTGCAATTAAGAAAGCCGGTGATGGCGGCAGTGAAAGGAGGAAAACAATCGGTGA 201 |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 72 CTTCTCTGGAATTGAGAAAGCCGGTTATGGCGGCAGTGAAAGGAGGAAAACAATCGGCGA 131 Query 202 GAAGAAGCAGCAATACGGTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAAT 261 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 132 GAAGAAGCAGCAATACGGTGGTTCAAATAACGTGTCGTAAGAAGGATTTGCATCCAGAAT 191 Query 262 TCCACGAAGACGCAAAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAA 321 ||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||| Sbjct 192 TCCACGAAGACGCGAAGGTATACTGCAATGGAGAGCTGGTGATGACGACGGGAGGAACAA 251 Query 322 AGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT 381 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 252 AGAAGGAGTATGTGGTTGATGTTTGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT 311 Query 382 CGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT 441 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 312 CGGCTTTGATGGTTGATGCTGATCAAGTGGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT 371 Query 442 CTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTATGCCTACTAAGAAAAGTA 501 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 372 CTGAGATTATGGAGATTCCGGTGCTTAAAGGAGAAATCGTTATGCCTACTAAGAAAAGTA 431 Query 502 AAGGTCC---CAAAGGGAAGAAGAAATGATGAG 531 ||||||| ||||||||||||||||||||||| Sbjct 432 AAGGTCCTGGCAAAGGGAAGAAGAAATGATGAG 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24665527299 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5