BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75350.1

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926916 jgi|Araly1|926916|scaffold_202477.1                        706    0.0  


> Ahg926916 jgi|Araly1|926916|scaffold_202477.1
Length=481

 Score =  706 bits (382),  Expect = 0.0
 Identities = 430/453 (95%), Gaps = 4/453 (1%)
 Strand=Plus/Plus

Query  83   GAAGAC-AAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTC  141
            |||| | |||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  12   GAAGGCGAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAATCCATGTGTTC  71

Query  142  CTTCTCTGCAATTAAGAAAGCCGGTGATGGCGGCAGTGAAAGGAGGAAAACAATCGGTGA  201
            |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  72   CTTCTCTGGAATTGAGAAAGCCGGTTATGGCGGCAGTGAAAGGAGGAAAACAATCGGCGA  131

Query  202  GAAGAAGCAGCAATACGGTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAAT  261
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct  132  GAAGAAGCAGCAATACGGTGGTTCAAATAACGTGTCGTAAGAAGGATTTGCATCCAGAAT  191

Query  262  TCCACGAAGACGCAAAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAA  321
            ||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct  192  TCCACGAAGACGCGAAGGTATACTGCAATGGAGAGCTGGTGATGACGACGGGAGGAACAA  251

Query  322  AGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT  381
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  252  AGAAGGAGTATGTGGTTGATGTTTGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTT  311

Query  382  CGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT  441
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  312  CGGCTTTGATGGTTGATGCTGATCAAGTGGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTT  371

Query  442  CTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTATGCCTACTAAGAAAAGTA  501
            ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  372  CTGAGATTATGGAGATTCCGGTGCTTAAAGGAGAAATCGTTATGCCTACTAAGAAAAGTA  431

Query  502  AAGGTCC---CAAAGGGAAGAAGAAATGATGAG  531
            |||||||   |||||||||||||||||||||||
Sbjct  432  AAGGTCCTGGCAAAGGGAAGAAGAAATGATGAG  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24665527299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5