BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75380.1 Length=1550 Score E Sequences producing significant alignments: (Bits) Value Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2 1842 0.0 Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1 913 0.0 > Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2 Length=1431 Score = 1842 bits (997), Expect = 0.0 Identities = 1104/1156 (96%), Gaps = 5/1156 (0%) Strand=Plus/Plus Query 3 tctctcaagtgaagaatctctctctatctctatcttcttccattgatcctttcctctctc 62 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCAAGTGAAGAATCTCTCTCTATCTCTATCTTCTTCCATTGATCCTTTCCTCTCTT 60 Query 63 tGGCTTGTTTCAGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCCACTGTTTATAC 122 |||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 61 TGGCTTGTGTCGGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCGACTGTTTGTAC 120 Query 123 CATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCG-AAGGAAGATGAGATCG 181 ||||||||||||| |||| || ||||| || || || ||| | ||| ||||||| |||| Sbjct 121 CATTCACGATCTATTCCGATTCCAATTGTTGCTTACTAAA-AGAAAGAAAGATGAAATCG 179 Query 182 GTTCAAGCACCAGTTGTTTGTCCTGCAATTCGACCAAGACAAGTAGGTGCATGTGCTTCA 241 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 180 CTTCAAGCACCAGTTGTTTGTCCTGCAATTCGTCCAAGACAAGTAGGTGCATGTGCTTCA 239 Query 242 CTAGTCAACTACACTGGTCTGAAACCTAGAAGCCAATTTTGGGGTAATCGGACAAAAGGT 301 || || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 240 CTTGTTAACTACACTGGTCTGAAACCTAGAAGACAATTCTGGGGTAATCGGACAAAAGGT 299 Query 302 GTCAAGTCTCAGGGCACTACCACAACAATCACTCTTAGATTGTGCAACAAGAGTATCAAG 361 ||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||| Sbjct 300 TTCAAGTCTCAGGG--C-ACCACCACAATCACTCTTAGATTGTGCGACAAGAGTATCAAG 356 Query 362 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCTGAAAATTTCAATGAAAAT 421 ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| Sbjct 357 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCAGAGAATTTTAATGAGAAT 416 Query 422 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 476 Query 482 GGTTTTATGGTGAAGATGAGGGATGGTAGGCAACTACGATGTGTCCATAACAATCCTCAA 541 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 477 GGTTTCATGGTGAAGATGAGGGATGGTAGACAACTACGATGTGTCCATAACAATCCTCAA 536 Query 542 GGAGGGCATTTACCAGATTATGCTCCACACCCTGCTATTGTCTTGAAAATGGAAGATGGA 601 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 537 GGAGGGCATTTACCAGATTATGCTCCTCACCCTGCTATTGTGTTGAAAATGGAAGATGGA 596 Query 602 ACTGGTCTTCTCCTTCCGATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 661 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 597 ACTGGTCTTCTCCTTCCCATTATCGTGTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 656 Query 662 ATGACCAATGTCCAAATTGCAAGACCAACCATGTATCAAGTGGTGAAGGAAATGGTGGAC 721 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 657 ATGACCAATGTCCAAATTGCAAGACCCACCATGTATCAAGTGGTGAAGGAGATGGTGGAC 716 Query 722 AAGATGGGTTACGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCATATTTT 781 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 717 AAGATGGGTTATGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCGTATTTT 776 Query 782 GCCCAGTTATTCCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 841 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GCCCAGTTATACCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 836 Query 842 CCTTCAGATGCAATCAATATAGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 901 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 837 CCTTCAGATGCAATCAATATCGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 896 Query 902 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCAGGGAAGATATCAACACCGGCACCA 961 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| Sbjct 897 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCTGGGAAGATATCAACGCCGACACCA 956 Query 962 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCAAATGGTCAGGCTTGTCTTGAT 1021 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 957 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCTAATGGTCAGGCTTGTCTTGAT 1016 Query 1022 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGAT 1081 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1017 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCTGTTGATGAAGAGCGATATGAT 1076 Query 1082 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAA 1141 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1077 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAGCGTAACCTGAGGAAA 1136 Query 1142 TACACATGAGAGAGGT 1157 |||||||||||||||| Sbjct 1137 TACACATGAGAGAGGT 1152 Score = 327 bits (177), Expect = 1e-88 Identities = 226/247 (91%), Gaps = 14/247 (6%) Strand=Plus/Plus Query 1232 TCGATCAACAATTATTGGCTGTGTACATAAACTAAGAAGAAAGTCATTGGTCGGAATC-A 1290 |||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| | Sbjct 1152 TCGATCAACAATTATTGGCTGTGTACAT-AATTAAGAAG-AAGTCATTGGTCGGAATCAA 1209 Query 1291 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGAAGAATGCTTCTG 1350 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1210 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGGAGAATGCTTCTG 1269 Query 1351 CACTTTACCCATTTCCCTaaaaaataaacaaaaaaaaaT-GTATAATGTATGTATGTAGC 1409 ||||||||||||||||| |||||| |||||||||||||| |||||| | | ||||||| Sbjct 1270 CACTTTACCCATTTCCCAAAAAAA-AAACAAAAAAAAATTGTATAA---A-GCATGTAGC 1324 Query 1410 GTGATGTGTACATATTAC-TTA-TTAAT-C-T-ATGCAAATTAAGCTCACTCTAATTACT 1464 ||||||||||||||||| ||| ||| | | | ||||||||||||||||||||||||| | Sbjct 1325 GTGATGTGTACATATTATATTACTTATTACATTATGCAAATTAAGCTCACTCTAATTAAT 1384 Query 1465 TTTAAGT 1471 ||||||| Sbjct 1385 TTTAAGT 1391 > Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1 Length=1358 Score = 913 bits (494), Expect = 0.0 Identities = 838/1001 (84%), Gaps = 35/1001 (3%) Strand=Plus/Plus Query 169 GAAGATGAGATCGGTTCAAGCACCAG-TTGTTTGTCCT-GCAATTCGACCAAGACAAGTA 226 ||||||||| ||| |||||||||| | ||||||| ||| | |||| || |||||| | Sbjct 114 GAAGATGAGGTCGCTTCAAGCACC-GATTGTTTGCCCTAG-TGTTCGTCCTAGACAACTG 171 Query 227 GGTG-CATGTGCTTCACTAGTCAACTACACTGGTCT-G-AAAC-------CT-AGAAGCC 275 |||| | | ||||||||||||||||| | || || | | |||| || ||| || Sbjct 172 GGTGTC-TCTGCTTCACTAGTCAACTGCTCT-GTTTCGAAAACTAGGAGTCTCGGAAACC 229 Query 276 AATTTTGGGGTAATCGGA-CA-AAAGGTGTCAAGTCTCAGGGCACTACCACAACAATCAC 333 |||| |||||||||| || || ||| |||||||||||||| ||| || |||| Sbjct 230 AATTCTGGGGTAATCAGACCAGAAA--TGTCAAGTCTCAGGTTGCTA-CA-GTGAATC-T 284 Query 334 TC-TTAGATTGTGCAACAAGAGTAT-CAAGTGTGTTTTCAGCTCTCACTCTGATGGTAAT 391 || | || || | |||||||| ||| ||| |||||||||| || |||||||||| Sbjct 285 TCGTCGGA-GGT-C--TAAGAGTATACAA-TGTCTTTTCAGCTCGCATTCTGATGGTACC 339 Query 392 GGAAGCACTGCTGAAAATTTCAATGAAAATGATGAGGAATATGTTAACTCTAGTGTAGTG 451 |||||||| || || |||||||| || || |||||||| |||||||| ||||||||| || Sbjct 340 GGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTTAAGTCTAGTGTATTG 399 Query 452 GAAGCTGTTGAAGTAAAAAGTGGAGCAGATGGTTTTATGGTGAAGATGAGGGATGGTAGG 511 ||||||||||| ||||| |||||| |||||||||| ||||||||||||| ||||| ||| Sbjct 400 GAAGCTGTTGAGGTAAAGAGTGGACCAGATGGTTTCATGGTGAAGATGAAAGATGGGAGG 459 Query 512 CAACTACGATGTGTCCATAACAATCCTCAAGGAGGGCATTTACCAGATTATGCTCCACAC 571 ||||| |||||||| || || ||||||||||||||| || | ||| ||||||||||||| Sbjct 460 CAACTTCGATGTGTTCACAATAATCCTCAAGGAGGGAATCTCCCAAATTATGCTCCACAT 519 Query 572 CCTGCTATTGT-CTTGAAAATGGAAGATGGAACTGGTCTTCTCCTTCCGATTATCGTCTT 630 |||| ||||| | ||||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 520 TCTGCAATTGTGC-TGAAAATGGAAGATGGAACGGGTCTTCTTCTTCCTATTATCGTCTT 578 Query 631 GGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACCAATGTCCAAATTGCAAGACCAAC 690 |||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || Sbjct 579 GGAGATGCCTAGTGTGTTACTTATAGCAGCAATGACAAATGTTCAAATAGCAAGACCCAC 638 Query 691 CATGTATCAAGTGGTGAAGGAAATGGTGGACAAGATGGGTTACGAAGTTAGACTTGTTAG 750 |||||||||||||||||||| ||||| ||||| |||||||| || ||||| |||||||| Sbjct 639 TATGTATCAAGTGGTGAAGGAGATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTAG 698 Query 751 AGTCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGGTGGGTAA 810 ||| |||| ||||||||||||||||||||| || |||||| |||||||||||||||||| Sbjct 699 AGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGTAA 758 Query 811 TGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCAATCAATATAGCTGTTAG 870 | | |||||| || |||||||||||| | ||||| |||||||| ||||||||||| || Sbjct 759 TAAGTTGGAGTGCGTTAGCTTTGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTGAG 818 Query 871 ATGCAAGATACCTATCCAAGTGAACAAGTACCTTGCATATAGTGATGGAATGAGAGTCAT 930 ||||||| ||||||||||||| |||||||| || || ||||||||||||||||||||||| Sbjct 819 ATGCAAGGTACCTATCCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCAT 878 Query 931 TGAGTCAGGGAAGATATCAACACCGG-CACCAGCTTCAGATGGTTTATTATTTACTGAAC 989 || || || ||| |||||| | | |||| ||||||||||||||||| |||||||||| Sbjct 879 CGATTCCGGAAAGCTATCAA-AGCAAACACCTGCTTCAGATGGTTTATTGTTTACTGAAC 937 Query 990 AAGACCGACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAA 1049 |||||| |||||||||||| ||||| ||||||| ||||| ||| || | || || || | Sbjct 938 TAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAATTCGATCTATTAAGGAACA 997 Query 1050 TGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1109 |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 998 TGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1057 Query 1110 GTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGA 1150 | ||||||| ||| ||||| || || ||||||||||||||| Sbjct 1058 GCCAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA 1098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58049533380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5